Recovery of Francisella tularensis from soil samples by filtration and detection by real-time PCR and cELISA

The aim of this study was to develop a specific and highly sensitive method able to detect very low concentrations of Francisella tularensis in soil samples by real-time PCR (qPCR) with SYBR Green I. tul4 gene, which encodes the 17-kDa protein (TUL4) in F. tularensis strains, was amplified using a LightCycler (LC) device. We achieved a detection limit of 0.69 fg of genomic DNA from F. tularensis subp. holarctica live vaccine strain (LVS), corresponding to a value less than 3.4 genome equivalents per reaction. The qPCR was shown to be specific, highly sensitive and reproducible. In addition, we evaluated 2 new methods for recovering bacteria from soil based on 1-step filtration using glass fiber filters and PVDF filters. These filtration methods enabled us to recover F. tularensis efficiently from soil samples. As few as 50 CFU per 0.5 g of soil were detected by qPCR. Capture enzyme-linked immunosorbent assay (cELISA) allowed us to detect and quantify the amount of bacteria recovered from soil by an immunological method. Although qPCR was more sensitive than cELISA, we did not observe substantial differences in the amount of bacteria quantified by both methods.     

Lead isotope ratios in lichen samples evaluated by ICP-ToF-MS to assess possible atmospheric pollution sources in Havana,Cuba

Epiphytic lichens, collected from 119 sampling sites grown over “Roistonea Royal Palm” trees, were used to assess the spatial distribution pattern of lead (Pb) and identify possible pollution sources in Havana (Cuba). Lead concentrations in lichens and topsoils were determined by flame atomic absorption spectrophotometry and inductively coupled plasma (ICP) atomic emission spectrometry, respectively, while Pb in crude oils and gasoline samples were measured by ICP-time of flight mass spectrometry (ICP-ToF-MS). Lead isotopic ratios measurements for lichens, soils, and crude oils were obtained by ICP-ToF-MS. We found that enrichment factors (EF) reflected a moderate contamination for 71% of the samples (EF > 10). The ²⁰⁶Pb/²⁰⁷Pb ratio values for lichens ranged from 1.17 to 1.20 and were a mixture of natural radiogenic and industrial activities (e.g., crude oils and fire plants). The low concentration of Pb found in gasoline (<7.0 μg L^?1) confirms the official statement that leaded gasoline is no longer used in Cuba.     

Hand anthropometric study in northern Colombia

The main purpose of this study is to gather information about the dimensions of the northern Colombian (Caribbean region) population, focusing on the dimensions of the hand and comparing them with measurements from other regions. Thirty-two hand dimensions were chosen and 120 males and 86 females were measured. Results indicated that there were differences between the dimensions of the hand for men and women, showing that men are larger. Also, there was a comparison made between some measurements of other studies in different regions of Colombia, the USA, Chile, Jordan, Korea and Japan. The results indicated important physiological differences between regions in Colombia and across countries. It was therefore concluded that differences in anthropometric measurements must be included in the design and procurement of machinery and apparatus in order to avoid productivity loss, occupational injuries or illness.     

Shallow fluid flow over an obstacle: higher-order non-hydrostatic modeling and breaking waves

Environmental Fluid Mechanics - The simulation of shallow flows over obstacles is an important problem in environmental fluid dynamics, including exchange flows over seabed sills, atmospheric flows...     

A bathymetric study to support management plans for La Caimanera coastal lagoon,Gulf of Morrosquillo,Colombia

There are large extensions of coastal lagoons in the Colombian Caribbean. In spite of their renowned environmental and socio-economic importance, these ecosystems have been poorly evaluated. To initiate a process for understanding the biophysical features of the La Caimanera lagoon, bathymetric surveys were conducted on a 25 × 25 m grid approach. Echo sounder and GPS were used to collect the data, which was then analyzed with ArcGIS 9.2 to produce bathymetry maps. A total of 3355 data points indicated an average depth of 1.83 m (SD ± 0.55) with a range of 0.7–5.4 m. Higher and lower values were recorded within the access channel and on the western margin of the lagoon respectively, suggesting that depth distribution was probably related to the interaction of different factors. These factors include the hydrological influence of the entrance channel currents and the micro-catchments of the streams located on the southeast side, along with the possible effects of the survey course selection. Apparently, the dynamic of the streams caused sedimentation on the opposite southwest margin, affecting the environmental quality by siltation and the accumulation of organic matter. Research, monitoring programs, and new management plans are necessary to avoid the deterioration of the ecological goods and services derived from this important local ecosystem.     

Differential deposition of antimicrobial proteins in blue tit (Cyanistes caeruleus) clutches by laying order and male attractiveness

Female birds can influence offspring fitness by varying the relative quantities of egg components they deposit within and between clutches. Antimicrobial proteins (lysozyme, ovotransferrin, and avidin) are significant components of the avian albumen and likely aid in defense of embryos from microbial infection. Within clutches, females may enhance antimicrobial defense of early-laid eggs to protect them from the high risk of infection incurred before the onset of incubation. Among entire clutches, females may invest more resources in young sired by more attractive males because they have higher reproductive value. We tested these hypotheses by quantifying antimicrobial protein distribution within and among clutches in blue tit eggs. Contrary to our hypothesis, clutches showed no differential deposition of lysozyme or avidin within clutches, but eggs laid in the middle of the sequence had higher concentrations of ovotransferrin than eggs in the beginning and end. Consistent with our second hypothesis, we found that females produced eggs with higher concentrations of lysozyme (although not ovotransferrin or avidin) when mated to more attractive (more UV-reflective) males. Furthermore, females mated to polygynous males deposited less lysozyme than those mated to monogamous males. These data suggest that allocation of lysozyme at the clutch level may be a maternal effect mediated by male qualities.     

Steady open channel flows with curved streamlines: the Fawer approach revised

Rapidly varied open channel flows are characterized by curvilinear streamlines, thereby resulting in a pressure field different from the hydrostatic approach proposed in the standard gradually varied flow theory. This problem is related to environmental hydraulic problems such as the undular hydraulic jump and flow over round-crested weirs, for which streamline curvature effects are significant. The inclusion of the curvilinear streamline effect in an extended energy equation was firstly by Fawer. Most of the extended energy equations currently employed are therefore modified forms of the original Fawer approach. The aim of the present study is to highlight and remind engineers of the outstanding theory presented by Fawer. Herein, his approach for steady open channel flow with curved streamlines is revised and compared with experimental observations. Computational methods are presented in detail and based on present results, it can be observed that more recent and complex models for these problems are similar to the original proposal of Fawer, and hardly more accurate in some instances. Based on the proposed study an useful framework for theoretical models for steady open channel flows with curved streamlines is proposed.     

Future agriculture with minimized phosphorus losses to waters: Research needs and direction

The series of papers in this issue of AMBIO represent technical presentations made at the 7th International Phosphorus Workshop (IPW7), held in September, 2013 in Uppsala, Sweden. At that meeting, the 150 delegates were involved in round table discussions on major, predetermined themes facing the management of agricultural phosphorus (P) for optimum production goals with minimal water quality impairment. The six themes were (1) P management in a changing world; (2) transport pathways of P from soil to water; (3) monitoring, modeling, and communication; (4) importance of manure and agricultural production systems for P management; (5) identification of appropriate mitigation measures for reduction of P loss; and (6) implementation of mitigation strategies to reduce P loss. This paper details the major challenges and research needs that were identified for each theme and identifies a future roadmap for catchment management that cost-effectively minimizes P loss from agricultural activities.     

Phosphorus management in Europe in a changing world

Food production in Europe is dependent on imported phosphorus (P) fertilizers, but P use is inefficient and losses to the environment high. Here, we discuss possible solutions by changes in P management. We argue that not only the use of P fertilizers and P additives in feed could be reduced by fine-tuning fertilization and feeding to actual nutrient requirements, but also P from waste has to be completely recovered and recycled in order to close the P balance of Europe regionally and become less dependent on the availability of P-rock reserves. Finally, climate-smart P management measures are needed, to reduce the expected deterioration of surface water quality resulting from climate-change-induced P loss.     

Heavy metal concentrations in litteral sediments from the Beagle Channel,Tierra del Fuego,Argentina

For the first time the concentration of trace metals (Fe, Pb, Cu, Zn, Cd and total Hg) of sediments from the coastal zone of the Beagle Channel (Tierra del Fuego, in Southern Argentina) were measured. Atomic absorption spectrophotometry was utilized in order to determine the metal contents. The level of metals as observed in the sediments was recognized as the natural background, even though the use of normalization of lead, copper, and zinc to iron allowed the identification of the main sources of metal pollution for this environment. In order to develop future environmental monitoring programmes for the area of Ushuaia city and the Beagle Channel, the present results need to be considered.