Substitutable biodiesel feedstocks for the UK: a review of sustainability issues with reference to the UK RTFO

The sustainability performance of five potential UK biodiesel feedstocks is reviewed and their greenhouse gas performance investigated using the carbon and sustainability reporting methods of the UK Renewable Transport Fuel Obligation (RTFO). Of the feedstocks examined, and for which the RTFO supplies default carbon intensity values, only used cooking oil has guaranteed sustainability benefits. The other feedstocks have CO₂e payback periods of 25–5503 years if grown on converted forest or grassland, yet the RTFO currently requires no guarantee that this conversion has not taken place and requires no avoidance of indirect effects. As currently designed, the RTFO risks substantial, adverse environmental effects.     

Survival of Coronaviruses in Water and Wastewater

The advent of severe acute respiratory syndrome and its potential environmental transmission indicates the need for more information on the survival of coronavirus in water and wastewater. The survival of representative coronaviruses, feline infectious peritonitis virus, and human coronavirus 229E was determined in filtered and unfiltered tap water (4 and 23°C) and wastewater (23°C). This was compared to poliovirus 1 under the same test conditions. Inactivation of coronaviruses in the test water was highly dependent on temperature, level of organic matter, and presence of antagonistic bacteria. The time required for the virus titer to decrease 99.9% (T_99.9) shows that in tap water, coronaviruses are inactivated faster in water at 23°C (10 days) than in water at 4°C (>100 days). Coronaviruses die off rapidly in wastewater, with T_99.9 values of between 2 and 4 days. Poliovirus survived longer than coronaviruses in all test waters, except the 4°C tap water.     

Detection of presumed genes encoding beta-lactamases by sequence based screening of metagenomes derived from Antarctic microbial mats

• Beta-lactamase genes were found in all samples from distant places in Antarctica. • Class C beta-lactamase coding genes were the most frequently found. • Diversity of sequences exceeds that of the beta-lactamases from clinical environment. Analysis of environmental samples for bacterial antibiotic resistance genes may have different objectives and analysis strategies. In some cases, the purpose was to study diversity and evolution of genes that could be grouped within a mechanism of antibiotic resistance. Different protocols have been designed for detection and confirmation that a functional gene was found. In this study, we present a sequence-based screening of candidate genes encoding beta-lactamases in 14 metagenomes of Antarctic microbial mats. The samples were obtained from different sites, representing diverse biogeographic regions of maritime and continental Antarctica. A protocol was designed based on generation of Hidden Markov Models from the four beta-lactamase classes by Ambler classification, using sequences from the Comprehensive Antibiotic Resistance Database (CARD). The models were used as queries for metagenome analysis and recovered contigs were subsequently annotated using RAST. According to our analysis, 14 metagenomes analyzed contain A, B and C beta-lactamase genes. Class D genes, however, were identified in 11 metagenomes. The most abundant was class C (46.8%), followed by classes B (35.5%), A (14.2%) and D (3.5%). A considerable number of sequences formed clusters which included, in some cases, contigs from different metagenomes. These assemblies are clearly separated from reference clusters, previously identified using CARD beta-lactamase sequences. While bacterial antibiotic resistance is a major challenge of public health worldwide, our results suggest that environmental diversity of beta-lactamase genes is higher than that currently reported, although this should be complemented with gene function analysis.     

Evaluation of the Contribution of Genetic Research to the Management of the Endangered Plant Zieria prostrata

Abstract: Zieria prostrata (Rutaceae) is known from only four headlands within a 3-km stretch of coastline in New South Wales, Australia. The species was presumed to have occurred at a headland 24 km south of its present range. We used random amplified polymorphic DNA analysis to assess patterns of genetic variation within and among the extant populations. The analysis also included an individual reputedly rescued from the now extinct population. A high level of population divergence was revealed by principal coordinate analysis and an analysis of molecular variance (AMOVA; 37% among populations). Our genetic findings provide implications for the conservation management of the species. First, the loss of any one population would lead to a severe loss of genetic variation. Second, an adequate ex situ collection must sample the full range of genetic diversity from all populations. Third, the consequences of mixing populations may be an important conservation consideration if further translocations proceed. Fourth, the individual apparently sampled prior to its population extinction is genetically similar to individuals from one of the extant sites. This degree of similarity was unexpected and, after further investigation, led to the conclusion that prior existence of the species at the site is doubtful. Subsequently, a planned reintroduction program was abandoned. So far, of these four management implications, only the last has had a direct management outcome. Those implications that failed to lead to practical management outcomes did so because the same management recommendations could be obtained without genetic research. Clearly, the challenge for more effective conservation is to identify those cases in which genetic studies are likely to produce practical outcomes for conservation managers. This may be best achieved by assessing the outcomes of genetic studies already conducted.     

Distinguishing stressors acting on land bird communities in an urbanizing environment

Urbanization has profound influences on ecological communities, but our understanding of causal mechanisms is limited by a lack of attention to its component stressors. Published research suggests that at landscape scales, habitat loss and fragmentation are the major drivers of community change, whereas at local scales, human activity and vegetation management are the primary stressors. Little research has focused on whether urbanization stressors may supplant natural factors as dominant forces structuring communities. We used model selection to determine the relative importance of urban development, human activity, local and landscape vegetation, topography, and geographical location in explaining land bird species richness, abundance, and dominance. We analyzed the entire community and groups of species based on ecological characteristics, using data collected in remnant forests along a gradient of urban development in the Lake Tahoe basin, California and Nevada, USA. Urbanization stressors were consistently among the principal forces structuring the land bird community. Strikingly, disturbance from human activity was the most important factor for richness in many cases, surpassing even habitat loss from development. Landscape-scale factors were consistently more important than local-scale factors for abundance. In demonstrating considerable changes in land bird community structure, our results suggest that ecosystem function in urban areas may be severely compromised. Such changes compel local- and landscape-scale management, focused research, and long-term monitoring to retain biodiversity in urban areas to the extent possible.     

Inhalation of vanadium modifies gap junctions in mouse seminiferous tubules

Vanadium (V) adhering to inhaled particles has been associated with male reproductive alterations. Intercellular junction proteins, such as connexin 43, constitute the blood-testes barrier. These proteins are crucial for the reconstitution of the barrier during spermatogenesis. Normally, connexins are located between cell membranes but in cells exposed to certain metals or which are transformed, their location is altered. The objective of this study was to examine the effect of the inhalation of vanadium pentoxide on the distribution of connexin 43 in seminiferous tubules of mice. Immunohistochemical localization of connexin 43 demonstrated the redistribution of the protein that increased with time of exposure while intensity of stain on the membranes decreased. In previous studies, reduction in the actin and γ-tubulin stain intensity upon V inhalation has been observed. All these alterations may explain the reprotoxic effect associated with vanadium.     

Rapana venosa as a bioindicator of environmental pollution

The aim of this investigation was to examine biochemical differences in the gastropod Rapana venosa (R. venosa) from polluted (RvP) and nonpolluted (RvN) sites of the Black Sea's Bulgarian coast that may serve as bioindicators of environmental quality. Mussels Mytilus galloprovincialis (MMg) were collected from polluted (MMgP) and nonpolluted (MMgN) sites at the same time for comparison. Bioactive compounds and the antioxidant activity of dry matter (DM) methanol extracts from RvP and RvN were determined. Three-dimensional fluorometry (3D-FL) and Fourier transform infrared (FTIR) analyses were used to evaluate polyphenols and proteins. DM methanol extracts from RvP, and to lesser extent RvN, showed high amounts of total phenolics (23.22±2.9 and 15.60±1.8 mg GAE · g^?1 DW) and exhibited high levels of antioxidant activity in some radical scavenging assays (μ MTE · g^?1 DW): 56.38±5.2 and 33.79±3.3 by 2,2azino-bis (3-ethyl-benzothiazoline-6-sulfonic acid) diamonium salt (ABTS·⁺); 54.79±5.6 and 33.7±2.6 by cupric reducing antioxidant capacity (CUPRAC); 62.34±6.8 and 30.31±3.9 by the 1diphenyl-2-picrylhydrazyl method (DPPH). A correlation in the above indices was found between R. venosa and M. galloprovincialis, but all results were relatively higher for M. galloprovincialis than for R. venosa. The obtained indices of R. venosa may serve as a bioindicator of environmental ecological quality.     

Moderate stoichiometric homeostasis in the sea urchin Lytechinus variegatus: effects of diet and growth on C:N:P ratios

The influence of dietary elemental contents on consumer stoichiometry was investigated in selected and combined soft tissues (as a proxy of the whole individual) of the omnivorous sea urchin, Lytechinus variegatus. We raised urchins for 4 months in controlled seawater tanks using three different diets with different nutritional contents (from lower to higher: seagrass, red macroalgae, and a formulated diet). Individuals fed the different diets varied an average of 19.7, 19.4, and 38 % in C:N, C:P, and N:P ratios, respectively, with stronger temporal variability for C:P and N:P ratios across tissues and whole individuals. This resulted in homeostasis parameters (1/H) of ?0.45, 0.09, and 0.38, respectively, for C:N, C:P, and N:P, indicative of homeostatic to weakly homeostatic organisms, at least for C:P and N:P ratios. Individuals fed the nutrient-rich formulated diet had higher growth rates (14 ± 0.83 g WW month^?1) than those fed macroalgae or seagrass (9.3 ± 0.57 and 3.4 ± 0.33 g WW month^?1, respectively). However, rapid body increments in more nutritional diets caused both a decrease in the %N and an increase in the %P of soft tissues, which resulted in significant but opposite effects of diet stoichiometry and growth in sea urchin C:N (R = ?0.74 and R = 0.93, for diet and growth effects, respectively) and N:P ratios (R = 0.60 and R = ?0.63, also, respectively, for diet and growth effects). Among potential compensatory mechanisms helping to preserve certain levels of homeostasis, ingestion rates (g WW diet per g WW of urchin) were higher for seagrass and macroalgae diets than for the nutrient-rich formulated diet. In contrast, absorption and growth efficiencies displayed significant negative associations with nutrient contents in diets and did not exhibit nutritional compensation. Overall, our results suggest that resource stoichiometry strongly determines the growth rate of individuals (R = 0.88, P < 0.01), and moderate variability in C:N:P ratios of sea urchins possibly arise from differences in the allocation of proteins and RNA to body components, similarly to what has been proposed by the growth rate hypothesis.     

Switching to Plan B: changes in the escape tactics of two grasshopper species (Acrididae: Orthoptera) in response to repeated predatory approaches

Most studies examining escape behaviour have considered single approaches and single fleeing responses; few have considered how organisms’ response is influenced by persistent pursuit. We explored fleeing behaviour of two grasshopper species to test whether they modified escape behaviour when approached repeatedly. Schistocerca alutacea did not increase flight initiation distance (FID) upon repeated approach but fled farther. Psinidia fenestralis increased its FID on the second approach but decreased its flight distance over successive escapes. Both species showed a bimodal pattern of flight direction, either flying directly away or flying perpendicular to the direction of the observer’s approach. Neither species showed a significant pattern of flight direction or change in flight direction with successive escapes. Most (88 %) P. fenestralis initially landed on sand, but after repeated approaches an increasing proportion landed in grass and hid. Both species therefore changed escape behaviour with persistent pursuit but used different tactics, suiting their flight ability or camouflage, and optimised habitat use. Three grasshopper species have now been examined for responses to repeated approach by predators and all show different tactics supporting escape decision theory. Our results emphasise the variety of escape responses across species and how the dynamic nature of escape responses vary according to an animal’s situation. Rather than single optimum escape options, each grasshopper species shows a range of responses, which vary with risk from persistent predators. Although grasshoppers provide an excellent model, it would be profitable to examine responses of a range of species according to levels of predation risk.     

Interactive effects of male and female age on extra-pair paternity in a socially monogamous seabird

Females sometimes obtain older sires for their offspring through extra-pair interactions, but how female age influences paternity is largely unexplored and interactive effects across the age span of both sexes have not been analyzed. To test whether female choice of sire age varies with female age in the blue-footed booby (Sula nebouxii), we examined associations between ages of both partners and the probability of extra-pair paternity (EPP) in 350 broods of parents up to 22 years old in a single breeding season. Extra-pair paternity enables a female to select an alternative sire for her offspring and could function to avoid or achieve particular combinations of parental ages. A male age?×?female age interaction revealed that in young females (≤4 years), EPP decreased with increasing age of the social partner, whereas in old females (≥8 years), it increased. Moreover, sires of extra-pair (EP) chicks of young females paired to young males were on average 6.33 years older than the females’ social partners. Since female boobies control copulatory access, this pattern could imply that young females choose old sires for their proven genetic quality and that old females avoid very old males because matings with them may risk infertility or genetic defects in offspring. Taking female age into account and observing across the whole age span may be necessary for understanding female age-based mate choice.