Rough Set Rule Induction for Suitability Assessment

The data that characterize an environmental system are a fundamental part of an environmental decision-support system. However, obtaining complete and consistent data sets for regional studies can be difficult. Data sets are often available only for small study areas within the region, whereas the data themselves contain uncertainty because of system complexity, differences in methodology, or data collection errors. This paper presents rough-set rule induction as one way to deal with data uncertainty while creating predictive if–then rules that generalize data values to the entire region. The approach is illustrated by determining the crop suitability of 14 crops for the agricultural soils of the Willamette River Basin, Oregon, USA. To implement this method, environmental and crop yield data were spatially related to individual soil units, forming the examples needed for the rule induction process. Next, four learning algorithms were defined by using different subsets of environmental attributes. ROSETTA, a software system for rough set analysis, was then used to generate rules using each algorithm. Cross-validation analysis showed that all crops had at least one algorithm with an accuracy rate greater than 68%. After selecting a preferred algorithm, the induced classifier was used to predict the crop suitability of each crop for the unclassified soils. The results suggest that rough set rule induction is a useful method for data generalization and suitability analysis.     

Observations on the workshop as a means of improving communication between holders of traditional and scientific knowledge

Traditional ecological knowledge (TEK) and the information and insights it offers to natural resource research and management have been given much attention in recent years. On the practical question of how TEK is accessed and used together with scientific knowledge, most work to date has examined documentation and methods of recording and disseminating information. Relatively little has been done regarding exchanges between scientific and traditional knowledge. This paper examines three workshop settings in which such exchanges were intended outcomes. The Barrow Symposium on Sea Ice, the Exxon Valdez Oil Spill Restoration Program Synthesis/Information Workshops, and the Alaska Beluga Whale Committee illuminate certain features of the preparation, format, and context of workshops or series of workshops and their eventual outcomes and influence. The examples show the importance of long-term relationships among participants and thorough preparation before the actual workshop. Further research should look more systematically at the factors that influence the success of a given workshop and the various ways in which participants perceive success.     

Microbial source tracking of Escherichia coli in a constructed wetland.

Little information has been gathered on the effect of avian species on the microbial water quality in constructed wetlands. To address this concern, fecal pollution from nonpoint and point sources was evaluated in a constructed wetland in Tolleson, Arizona. Antibiotic resistance profiling and biochemical fingerprinting were performed on 325 Escherichia coli isolates, collected from key points in the wetlands. Multivariate statistical analysis was used to interpret the data for samples collected on October 3 and December 12, 2000, and January 16, 2001. It was found that the passerine population was the major source of the Escherichia coli in the water samples collected in the wetlands on October 3 and December 12, 2000, whereas the regrowth in the treated municipal wastewater was the main source on January 16, 2001. This information is useful in providing data for operators in the monitoring of wetlands created for wastewater treatment and wildlife habitat.     

Zooplankton feeding ecology

Extracts of 19 of 24 species of sponge collected from Queensland. Australia, inhibited the growth of test microorganisms in in-vitro assays. A similar result has been obtained by earlier workers for extracts of species of sponge obtained from temperate waters. Some of the extracts, including extracts of Thorecta vasiforis, Arenochalina mirabilis and Acanthella kleutha, showed activity against bacterial strains that was comparable with that exhibited by penicillin G and streptomycin against these strains. Gram-positive bacteria were expecially sensitive to many extracts. Little activity was exhibited by any extract against four species of fungi tested. Some of the extracts were markedly toxic to one or more of the test organisms (a fish, a crustacean and a hydroid) used, but no clear pattern linking toxicity to these organisms with antimicrobial properties of the extracts emerged. In general, there bas a negative correlation between antimicrobial activity and surface-fouling, raising the possibility of using freedom from surface-fouling as an indicator of antimicrobial activity. Four of five encrusting species from the undersides of coral boulders showed antimicrobial activity. This study confirmed the value of using methanol-toluene extracts in field-based screening programmes, but emphasised the need to use additional extracting media such as methylene chloride in order to augment the number of antimicrobial compounds detected. There are indications that antimicrobial activity may be widespread in the order Dictyoceratida, in the order Verongida and in the order Axinellida, but sporadic in other orders of Porifera.     

Evaluation of concentration efficiency of the Pseudomonas aeruginosa phage PP7 in various water matrixes by different methods

Enteric viruses monitoring in surface waters requires the concentration of viruses before detection assays. The aim of this study was to evaluate different methods in terms of recovery efficiencies of bacteriophage PP7 of Pseudomonas aeruginosa, measured by real-time PCR, using it as a viral control process in water analysis. Different nucleic acid extraction methods (silica–guanidinium thiocyanate, a commercial kit (Qiagen Viral RNA Kit) and phenol–chloroform with alcohol precipitation) exhibited very low recovery efficiencies (0.08–4.18 %), being the most efficient the commercial kit used for subsequent experiments. To evaluate the efficiency of three concentration methods, PBS (as model for clean water) and water samples from rivers were seeded to reach high (HC, 10⁶ pfu ml^?1) and low concentrations (LC, 10⁴ pfu ml^?1) of PP7. Tangential ultrafiltration proved to be more efficient (50.36?±?12.91, 17.21?±?9.22 and 12.58?±?2.35 % for HC in PBS and two river samples, respectively) than adsorption–elution with negatively charged membranes (1.00?±?1.34, 2.79?±?2.62 and 0.05?±?0.08 % for HC in PBS and two river samples, respectively) and polyethylene glycol precipitation (15.95?±?7.43, 4.01?±?1.12 and 3.91?±?0.54 %, for HC in PBS and two river samples, respectively), being 3.2–50.4 times more efficient than the others for PBS and 2.7–252 times for river samples. Efficiencies also depended on the initial virus concentration and aqueous matrixes composition. In consequence, the incorporation of an internal standard like PP7 along the process is useful as a control of the water concentration procedure, the nucleic acid extraction, the presence of inhibitors and the variability of the recovery among replicas, and for the calculation of the sample limit of detection. Thus, the use of a process control, as presented here, is crucial for the accurate quantification of viral contamination.     

Human impacts on fire occurrence: a case study of hundred years of forest fires in a dry alpine valley in Switzerland

Forest fire regimes are sensitive to alterations of climate, fuel load, and ignition sources. We investigated the impact of human activities and climate on fire occurrence in a dry continental valley of the Swiss Alps (Valais) by relating fire occurrence to population and road density, biomass removal by livestock grazing and wood harvest, temperature and precipitation in two distinct periods (1904–1955 and 1956–2006) using generalized additive modeling. This study provides evidence for the role played by humans and temperature in shaping fire occurrence. The existence of ignition sources promotes fire occurrence to a certain extent only; for example, high road density tends to be related to fewer fires. Changes in forest uses within the study region seem to be particularly important. Fire occurrence appears to have been negatively associated with livestock pasturing in the forest and wood harvesting, in particular during the period 1904–1955. This study illustrates consistently how fire occurrence has been influenced by land use and socioeconomic conditions. It also suggests that there is no straightforward linear relationship between human factors and fire occurrence.     

Sex, intimidation and severed limbs: the effect of simulated predator attack and limb autotomy on calling and emergence behaviour in the field cricket Gryllus bimaculatus

Crickets can autotomize a limb in order to evade predation; however, this autotomy compromises their escape speed and, therefore, their ability to avoid subsequent predation events. We recorded two measures of predator-avoidance behaviour in field crickets (Gryllus bimaculatus) exposed to varying levels of predation threat, with the most extreme level leading to autotomy of a limb. Our first measure of caution was time to emergence from cover, which was affected by perceived predation treatment, with both autotomized males and females being significantly more cautious than intact individuals. For males (but not females), the presence of a calling conspecific encouraged earlier emergence. Our second measure of caution was alteration of male calling behaviour. Autotomized males remained silent for significantly longer time after disturbance than intact males, but there was no difference in call rate once they had resumed calling, suggesting that behavioural changes were not merely a result of injury response but a controlled modification of behaviour as a result of autotomy. These data suggest that autotomy in field crickets results in altered calling behaviour, which was not significantly altered with different acoustic environments.