Structure of the communities of small mammals (micromammalia) in forests on western slopes of the Northern Urals

Long-term data on the species composition and ratio of insectivores and rodents in forest ecosystems of the western macroslope of the Northern Urals are considered. It is shown that the micromammalian communities of mountain forests are characterized by higher total abundance and polydominance and comprise greater numbers of common species than the communities of taiga forests in neighboring regions of the Russian Plain. Hence, the mountain-forest communities of small mammals have high indices of species diversity and uniformity.Translated from Ekologiya, No. 2, 2005, pp. 138–145.Original Russian Text Copyright © 2005 by Bobretsov, Lukyanova, Poroshin.     

Intraspecific phylogeographic isolation of Arabian Gulf sailfish<Emphasis Type="Italic"> Istiophorus platypterus</Emphasis> inferred from mitochondrial DNA

The genetic structure of seven sailfish Istiophorus platypterus populations sampled from three locations inside and four locations outside the Arabian Gulf was determined by restriction fragment length polymorphism analysis of mitochondrial DNA of 147 individuals using eight restriction endonucleases. A total of 39 composite haplotypes derived from 27 presumptive restriction sites demonstrated significant differences in frequency between population groups inside and outside the Gulf (analysis of molecular variance 34.80%, P<0.001; F_ST=0.356) and evidence of restricted migration between them (average number of migrants, N_m=0.903). Haplotypes found only inside or outside the Gulf clustered to all major branches of a haplotype phylogeny, as did those found in both areas. The reduced genetic diversity of the Gulf populations and the fact that much of the differentiation between the population groups resulted from differences in haplotype frequency rather than divergence between haplotypes suggest a founder effect and a recent sampling of genotypes from the Indian Ocean. This was probably associated with dispersal into the Gulf after it was flooded by rising sea level after the end of the last glaciation around 8,000 years ago. At some point since then the population has evolved to complete its life cycle within the Gulf and shows a marked disruption to gene flow, consistent with dispersal data, at the Strait of Hormuz. These findings represent the first clear evidence of phylogeographic isolation occurring in a large, highly vagile, predatory istiophorid billfish, within a marginal sea.Communicated by O. Kinne, Oldendorf/Luhe     

Experimental evidence that keeping eggs dry is a mechanism for the antimicrobial effects of avian incubation

Avian incubation dramatically reduces the abundance and diversity of microbial assemblages on eggshells, and this effect has been hypothesized as an adaptive explanation for partial incubation, the bouts of incubation that some birds perform during the egg-laying period. However, the mechanisms for these antimicrobial effects are largely unknown. In this study, we hypothesized that microbial inhibition is partly achieved through removal of liquid water, which generally enhances microbial growth, from eggshells, and experimentally tested this hypothesis in two ways. First, we placed the first- and second-laid eggs of tree swallow (Tachycineta bicolor) clutches in unincubated holding nests with either ambient or increased water on eggshells. Second, we added water to eggshells in naturally partially incubated nests. We compared microbial growth on shells during a 5-day experimental period and found that, as predicted, both unincubated groups had higher microbial growth than naturally partially incubated controls, and that only in the absence of incubation did wetted eggs have higher microbial growth than unwetted eggs. Thus, we have shown that water increases microbial growth on eggshells and that incubation nullifies these effects, suggesting that removal of water from egg surfaces is one proximate mechanism for the antimicrobial effects of incubation.     

Measuring the environmental performance of IPPC industry: II. Applying the Environmental Emissions Index to quantify environmental performance trends from routinely reported data

Reported emissions data were collated for 35 pharmaceutical-manufacturing installations and 18 power stations holding IPPC licences in Ireland. Consistent and essentially complete sectoral emissions time-series were generated, covering 2002–2006 for the pharmaceutical sector, and 2001–2006 for the electricity-generating sector. Applying the Environmental Emissions Index (EEI) to reported emissions indicated environmental performance improvements of 35 and 30%, respectively, for these two sectors. However, considerable uncertainty was attributed to reporting of heavy metals, NO_x and NMVOC emissions at the installation level, and overall NMVOC emissions from the pharmaceutical sector appeared to be considerably under-reported. The fixed average toxicity factor applied to NMVOC emissions in the EEI may deviate from potential temporal changes in the NMVOC compound mix. Overall, reporting uncertainties were found to have a greater impact on EEI outputs than assumptions made in the EEI model, and including an estimate of total sectoral NMVOC emissions reduced the pharmaceutical sector's environmental performance improvement to 24%. The EEI facilitates the comparison and visualisation of reported emissions, integrating them into environmental performance trends. It should optimise interpretation of abundant, detailed, and underutilised ‘bottom-up’ emissions data generated by IPPC installations. For Ireland's pharmaceutical sector, these data are considerably more comprehensive than EPER data.     

Using Bacteriophages in Recycled Water Exposure Assessment Studies

Bacteriophages MS-2 and PRD-1 were used as indicators of human viral behaviour in a series of turf-grass irrigation and washing machine experiments to provide information about the level of human exposure to potential residual enteric viruses in recycled water that can affect health. Results provided evidence to support a potential inadvertent exposure volume of 0.01 ml for recycled water used for machine clothes washing. Results for irrigation experiments showed that a one log reduction in bacteriophage numbers on turf-grass was not achieved under exposure to high solar conditions after 4 h. Experimentation showed that bacteriophages may be usefully employed in exposure assessment studies based on the ease of their enumeration and logistical and cost considerations. In terms of future studies, observed differences in individual bacteriophage characteristics provide a rationale for using multiple viral indicators. However, limitations on the utility of bacteriophage also need to be considered.     

Hepatitis A Virus: State of the Art

Hepatitis A is the most common among all hepatitis worldwide in spite of an efficient vaccine and improved hygiene. Shellfish-borne outbreaks are still of major concern causing hundreds of cases and huge economical losses in the present context of global food trade. Hepatitis A virus (HAV) is a unique picornavirus with many differences in its molecular biology including both its incapacity to induce the inhibition of the cellular protein synthesis and a highly biased and deoptimized codon usage with respect the cell. The final goal of this intriguing strategy seems to be the need for a fine-tuning control of the translation kinetics, particularly at the capsid coding region, and the underlying mechanism is the use of a right combination of common and rare codons to allow a regulated ribosome traffic rate thus ensuring the proper protein folding. Capsid folding is critical to warrant a high environmental stability for a virus transmitted through the fecal–oral route with long extracorporeal periods.     

Harmonised Investigation of the Occurrence of Human Enteric Viruses in the Leafy Green Vegetable Supply Chain in Three European Countries

Numerous outbreaks have been attributed to the consumption of raw or minimally processed leafy green vegetables contaminated with enteric viral pathogens. The aim of the present study was an integrated virological monitoring of the salad vegetables supply chain in Europe, from production, processing and point-of-sale. Samples were collected and analysed in Greece, Serbia and Poland, from ??general?? and ??ad hoc?? sampling points, which were perceived as critical points for virus contamination. General sampling points were identified through the analysis of background information questionnaires based on HACCP audit principles, and they were sampled during each sampling occasion where as-ad hoc sampling points were identified during food safety fact-finding visits and samples were only collected during the fact-finding visits. Human (hAdV) and porcine (pAdV) adenovirus, hepatitis A (HAV) and E (HEV) virus, norovirus GI and GII (NoV) and bovine polyomavirus (bPyV) were detected by means of real-time (RT-) PCR-based protocols. General samples were positive for hAdV, pAdV, HAV, HEV, NoV GI, NoV GII and bPyV at 20.09?% (134/667), 5.53?% (13/235), 1.32?% (4/304), 3.42?% (5/146), 2?% (6/299), 2.95?% (8/271) and 0.82?% (2/245), respectively. Ad hoc samples were positive for hAdV, pAdV, bPyV and NoV GI at 9?% (3/33), 9?% (2/22), 4.54?% (1/22) and 7.14?% (1/14), respectively. These results demonstrate the existence of viral contamination routes from human and animal sources to the salad vegetable supply chain and more specifically indicate the potential for public health risks due to the virus contamination of leafy green vegetables at primary production.     

Spatiotemporal variation in the population ecology of scaly slipper lobsters <Emphasis Type="Italic">Scyllarides squammosus</Emphasis> in the Northwestern Hawaiian Islands

Scaly slipper lobster (Scyllarides squammosus) population ecology was examined using tag/recapture information at Necker Island (23°30′N; 164°35′W), Gardner Pinnacles (25°00′N; 168°50′W), Maro Reef (25°30′N; 170°45′W), and Laysan Island (25°48′N; 171°45′W) in the Northwestern Hawaiian Islands (NWHI) USA from 2002 to 2008. Although many aspects of S. squammosus life history and population dynamics were similar to those of other scyllarids, somatic growth differed from its congers. Scyllarides squammosus growth abruptly declined at maturity and, because of this, growth at length was better described using the Schnute as opposed to the more commonly von Bertalanffy growth model. Growth varied among locations, and survival varied among years; thereby being the first documentation of variability in the life history of a scyllarid. This study has expanded knowledge of scyllarid biology and documented that spatiotemporal variability in biological characteristics must be considered to understand and describe the population ecology of this species and probably of other scyllarids.     

Utilization of the solid sorbent media in monitoring of airborne cyclophosphamide concentrations and the implications for occupational hygiene

The main objective of the study was to evaluate the applicability of two solid sorbent media (Anasorb 708 and Strata X), the impinger filled with distilled water and PTFE filters for determination of airborne cyclophosphamide (CP) in the hospital working environment. For this purpose, air contamination of Masaryk Memorial Cancer Institute (Czech Republic) was monitored using the sampling apparatus containing the samplers described above. In addition, the surface contamination was also determined using the wipe sampling technique. During the monitoring, contamination of three different workplaces (storage room, preparation room and outpatient clinic) was studied. Using Strata X solid sorbent tubes, airborne CP was determined in all (n = 5) samples collected at the outpatient clinic over a 5 day monitoring period (concentration range: 0.3-4.3 ng m(-3)). Other samplers (including PTFE filters) did not collect any detectable amount of CP (the limit of detection, LOD ≤ 0.1 ng m(-3)). Negative results detected at filter samples indicate that CP determined at Strata X samples was most probably of gaseous origin. Surface contamination ranged from <2 to 19, <8 to 418 and 133-15,500 pg cm(-2) at the storage room, preparation room and outpatient clinic, respectively. The study showed that evaporation of antineoplastic drugs should not be neglected, albeit the concentrations determined in our study are relatively low. Therefore, proper monitoring of airborne contamination should involve simultaneous sampling of both particle-bonded and gaseous phases. In this way, Strata X sorbent tubes seem to be an effective tool for the sampling of gaseous CP in the indoor air.