Fine-scale chemical fingerprinting of an open coast crustacean for the assessment of population connectivity

Chemical fingerprinting techniques recently have been used to track larval dispersal of estuarine species that bear calcified structures, but the applicability of this important approach may be limited on the open coast where chemical signatures may be less distinctive and for the many species that do not retain calcified structures throughout development. Externally brooded embryos of the porcelain crab, Petrolisthes cinctipes, and inductively coupled plasma mass spectrometry were used to determine whether fine-scale variation in trace-elemental composition occurred along an open coast. Embryos were collected from 16 sites from 37.8° to 39.5° north latitude along the Pacific Coast of California, USA during late January and early February 2003. Discriminant function analysis revealed that collection sites, many separated by only a few kilometers along an open coast, could be differentiated with an overall accuracy of 73%, and combining the sites into three regions increased the accuracy to 88%. Thus, distinctive elemental signatures can be detected in open coast species even at a fine scale raising the possibility that larval tags can be developed for many more species than previously thought possible.     

Epithelial immunity in a marine invertebrate: a cytolytic activity from a cuticular secretion of the American horseshoe crab, <Emphasis Type="Italic">Limulus polyphemus</Emphasis>

The cuticle of the American horseshoe crab, Limulus polyphemus, is largely free of the macroscopic epibionts that rapidly colonize most solid surfaces exposed to sea water. Here, we describe a viscous surface secretion that coats the carapace of the horseshoe crab. We report methods for stimulating production of the substance, identify hemolytic and liposome-permeabilizing activities and provide a partial biochemical characterization. We propose that this secretion functions as an anti-fouling agent protecting the chitinized epithelium of the cuticle from colonization by deleterious epibionts.     

Temporal patterns of larval settlement and survivorship of two broadcast-spawning acroporid corals

Acroporid corals are the main reef-building corals that provide three-dimensional habitats for other reef organisms, but are decreasing on many reefs worldwide due to natural and anthropogenic disturbances. In this study, temporal patterns of larval settlement and survivorship of two broadcast-spawning acroporid coral species, Acropora muricata and A. valida, were examined through laboratory rearing experiments to better understand the potential for larval dispersal of this important coral group. Many larvae were attached (but not metamorphosed) to settlement tiles on the first examination 3–4 days after spawning (AS). The first permanent larval settlement (i.e. metamorphosed and permanently settled juvenile polyps) occurred at 5–6 days AS, and most larval settlement (85–97% of total) occurred within 9–10 days AS. Larval survivorship decreased substantially to around 50% by the first week of the experiment and to approximately 10% by the second to third week. The rates of larval attachment, settlement, and the initial drop in survivorship of larvae suggest that effective dispersal of some acroporid species may largely be completed within the first few weeks AS.     

Differences in morphology and habitat use among the native mussel <Emphasis Type="Italic">Mytilus trossulus</Emphasis>, the non-native <Emphasis Type="Italic">M. galloprovincialis,</Emphasis> and their hybrids in Puget Sound,Washington

Mytilus galloprovincialis (Mg), the Mediterranean blue mussel, is sympatric with the native M. trossulus (Mt) throughout much of the north Pacific, likely as the result of human introduction. We investigated the distribution of the two species and their hybrids (Mgt) in Puget Sound, Washington, to determine whether differences occur in habitat preference between the two species and hybrids. In addition, we investigated whether there were consistent size and shape differences between the native and introduced mussels and hybrids. Measurements of over 6,000 mussels from 30 sites, of which 1,460 were genotyped for a species-specific genetic marker, revealed that Mg and Mgt can be found throughout Puget Sound. Mg and Mgt were larger and exhibited a greater height:length ratio than Mt. Frequencies of Mg and Mgt were higher in subtidal habitats, such as docks, than on intertidal rocks, walls or pilings. Within intertidal habitats, Mg and Mgt were more frequent than Mt in the lower reaches of the intertidal. At slightly more than half the sites the frequency of the three genotypes accorded with random mating expectations suggesting no consistent barriers to gene flow between species. The standardized random sampling methods and simple morphometric identification techniques described here can be used to test whether the frequency of invasive mussels changes over time and space in Puget Sound.     

Molecular dating and biogeography of the neritic krill Nyctiphanes

The genus Nyctiphanes (Malacostraca, Euphausiacea) comprises four neritic species that display antitropical geographic distribution in the Pacific (N. simplex and N. australis) and Atlantic (N. couchii and N. capensis) Oceans. We studied the origin of this distribution applying methods for phylogenetic reconstruction and molecular dating of nodes using a Bayesian MCMC analysis and the DNA sequence information contained in mtDNA 16S rDNA and cytochrome oxidase (COI). We tested hypotheses of vicariance by contrasting the time estimates of cladogenesis with the onset of the major barriers to ocean circulation. It was estimated that Nyctiphanes originated in the Pacific Ocean during the Miocene, with a lower limit of 18 miilion years ago (Mya). An Atlantic–Pacific cladogenic event (95% HPD 3.2–9.6) took place after the closure of the Tethyan Sea, suggesting that dispersal occurred from the Indo-Pacific, most likely via southern Africa. Similarly, the antitropical distribution pattern observed in the eastern Atlantic Ocean likely resulted from recent Pliocene–Pleistocene (95% HPD 1.0–4.97) northward dispersal from the southern hemisphere. Our results imply that dispersal appears to have had a significant role to play in the evolution of this group. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Rapid tissue reduction and recovery in the sponge <Emphasis Type="Italic">Aplysinella</Emphasis> sp.

We observed a pronounced, yet reversible tissue reduction in the tropical sponge Aplysinella sp. under non-experimental conditions in its natural habitat, after transfer into seawater tanks, as well as after transplantation from deep to shallow water in the field. Tissue reduction resulted in the formation of small “reduction bodies” tightly attached to the sponge skeleton. Although volume loss and gain were substantial, both tissue reduction and regeneration were often remarkably rapid, occurring within few hours. Microscopic analysis of the reduction bodies revealed morphological similarities to previously described sponge primmorphs, with densely packed archaeocytes and spherulous cells enclosed by a thin layer of epithelial-like cells. Denaturing gradient gel electrophoresis (DGGE) revealed pronounced changes in the sponge-associated microbial community upon tissue reduction during laboratory and field experiments and following changes in ambient conditions after transplantation in the field. Generally, the microbial community associated with this sponge proved less stable, less abundant, and less diverse than those of other, previously investigated Verongid sponges. However, one single phylotype was consistently present in DGGE profiles of Aplysinella sp. This phylotype clustered with γ-proteobacterial sequences found previously in other sponge species of different taxonomic affiliations and geographic provenances, as well as in sponge larvae. No apparent changes in the total secondary metabolite content (per dry weight) occurred in Aplysinella sp. upon tissue reduction; however, comparative analysis of intact and reduced tissue suggested changes in the concentrations of two minor compounds. Besides being ecologically interesting, the tissue reduction phenomenon in Aplysinella sp. provides an experimentally manipulable system for studies on sponge/microbe symbioses. Moreover, it may prove useful as a model system to investigate molecular mechanisms of basic Metazoan traits in vivo, complementing the in vitro sponge primmorph system currently used in this context.     

Impact of bias in predicted height on tree volume estimation: A case-study of intrinsic nonlinearity

Bias originating from intrinsic nonlinearity in nonlinear models is caused by excess curvature in the solution locus of parameter estimates derived from least squares procedures. Bias due to intrinsic nonlinearity varies according to sample size as well as model specification. This paper analyses consequences of fractionising data into smaller sub-samples. Based on measurements of stem diameter and total tree height from the first Danish national forest inventory, it is demonstrated how data splitting at random may cause the intrinsic nonlinear curvature to exceed the critical F-value. Application of a Taylor-series expansion shows that, for all practical purposes, the bias in predictions of individual tree volume (based on stem diameter and tree height) is negligible. To minimize residual variance, intrinsic curvature and, in turn, prediction bias, it is recommended that data be stratified according to site conditions, stand characteristics or other relevant criteria. Finally, the preferred model should exhibit close-to-linear behaviour.     

Do microbial processes regulate the stability of a coral atoll's enclosed pelagic ecosystem?

Complex marine ecosystems contain multiple feedback cycles that can cause unexpected responses to perturbations. To better predict these responses, complicated models are increasingly being developed to enable the study of feedback cycles. However, the sparseness of ecological data often limits the direct empirical parameterization of all model parameters. Here we use a Bayesian inverse analysis approach to synthesize empirical data and ecological theory derived from published studies of a coral atoll's enclosed pelagic ecosystem (Takapoto Atoll, French Polynesia). We then use the estimates of flux magnitudes to parameterize probabilistic compartment models with two forms of heterotrophic consumption: (1) “bottom-up” donor-controlled heterotrophic consumption and (2) “top-down” mass-action heterotrophic consumption. We explore how the flux magnitudes affect the ecosystem's stability properties of resilience, reactivity, and resistance under both assumptions for heterotrophic consumption. The models suggest that the microbial uptake of dissolved organic carbon (DOC) regulates the long term rate of return to steady state following a temporary or pulse perturbation (resilience), and the cycling of carbon between abiotic pools and heterotrophic compartments regulates the short-term response (reactivity). In the bottom-up process model, the sensitivity of steady state masses following a sustained or press perturbation (resistance) is highest for the DOC pool following a sustained change to the microbial uptake rate of DOC. Further, a change in the microbial uptake of DOC propagates through the ecosystem and affects the steady state values of zooplankton. The analysis suggests that the food web is highly dependent on the recycling between the abiotic and biotic carbon pools, particularly as mediated by the microbial consumption of DOC, and this recycling determines how the ecosystem responds to perturbations.     

Genetic diversity and population structure of the Chinese mitten crab <Emphasis Type="Italic">Eriocheir sinensis</Emphasis> in its native range

The Chinese mitten crab Eriocheir sinensis is an indigenous and economically important species in China, but can also be found as invasive species in Europe and America. Mitten crabs have been exploited extensively as a food resource since the 1990s. Despite its ecological and economic importance, the genetic structure of native mitten crab populations is not well understood. In this paper, we investigated the genetic structure of mitten crab populations in China by screening samples from ten locations covering six river systems at six microsatellite loci. Our results provide further evidence that mitten crabs from the River Nanliujiang in Southern China are a genetically differentiated population within the native range of Eriocheir, and should be recognized as a separate taxonomic unit. In contrast, extremely low levels of genetic differentiation and no significant geographic population structure were found among the samples located north of the River Nanliujiang. Based on the reproductive biology of mitten crabs and the geography of their habitat we argue that both natural and human-mediated gene flow are unlikely to fully account for the similar allele frequency distributions at microsatellite loci. Large population sizes of mitten crabs suggest instead that a virtual absence of genetic drift and significant homoplasy of microsatellite alleles have contributed to the observed pattern. Furthermore, a coalescent-based maximum likelihood method indicated a more than two-fold lower effective population size of the Southern population compared to the Northern Group and low but significant levels of gene flow between both areas.     

Using single- and multi-target regression trees and ensembles to model a compound index of vegetation condition

An important consideration in conservation and biodiversity planning is an appreciation of the condition or integrity of ecosystems. In this study, we have applied various machine learning methods to the problem of predicting the condition or quality of the remnant indigenous vegetation across an extensive area of south-eastern Australia—the state of Victoria. The field data were obtained using the ‘habitat hectares’ approach. This rapid assessment technique produces multiple scores that describe the condition of various attributes of the vegetation at a given site. Multiple sites were assessed and subsequently circumscribed with GIS and remote-sensed data.