Validation of a conductometric bienzyme biosensor for the detection of proteins as marker of organic matter in river samples

This article describes a conductometric bi-layer based bienzyme biosensor for the detection of proteins as a marker of organic matter in rivers. Proteins were chosen to be used as indicators of urban pollution. The working mechanism of the bienzyme biosensor is based on the enzymatic hydrolysis of proteins into several fractions (peptides and amino acids), which results in a local conductivity change depending of the concentration of proteins. In this work, we began with the optimization of biosensor response using bovine serum albumin (BSA) as standard protein. For this objective seven enzymatic biosensors were prepared: four enzymatic sensors with only one layer of enzyme (proteinase K, trypsin, pronase or protease X) and three other enzymatic sensors with two layers (first layer: membrane containing proteinase K; second layer: one of the three other enzymes: trypsin, pronase or protease X). The biosensors were obtained through the deposition of enzymatic layers and the cross-linking process between enzymes and BSA in saturated glutaraldehyde vapour. The response of the various biosensors, described previously, were compared with the values of total organic carbon (TOC), and those of organic nitrogen (Norg), as determined by the laboratory accredits (CEMAGREF of Lyon) using the traditional method of analysis (NF EN 1484, infrared spectroscopy) and (NF EN 25663, mineralization/colorimetry assay) respectively for each water sample obtained from di erent sites in Lyon (France). The linear correlations obtained with the response of the seven biosensors showed the most important indices of correlations for the biosensor with two enzymatic layers: proteinase K + pronase (pkp). The optimum conditions for the preparation of the pkp biosensor increased the sensitivity and gave a limit of quantification of 0.583 g/L for TOC and 0.218 g/L for Norg in water samples. This sensor shows good reproducibility (2.28%), a capacity to be used at temperatures range 10– 30°C (depending on the season) and moreover a long lifetime (5 weeks).     

Persistence and growth of faecal culturable bacterial indicators in water column and sediments of Vidy Bay, Lake Geneva, Switzerland

The aims of this study was to investigate the persistence and the growth of culturable bacterial indicators (CBI) including total coliforms (TC) and faecal coliforms represented by Escherichia coli, enterococcus (ENT), and aerobic mesophilic bacteria (AMB) in the surface sediments and the water column of Vidy Bay (Lake Geneva, City of Lausanne, Switzerland). The study was carried out for 60 d using microcosms containing Sewage Treatment Plant (STP) e uent and nonsterile water without CBI, as well as contaminated and non-contaminated sediments. The e ects of water temperature and of organic matter associated with sediments on the survival of CBI in the sediments and the water column were observed. The number of CBI colonies in the contaminated sediments of Vidy Bay and in the STP e uent was almost identical in the order of 105–107, 104–106, 103–105, and 104–107 CFU/100 g sediment or /100 mL water for TC, E. coli, ENT, and AMB respectively. A degradation of CBI was observed in the sediments where organic mater content was low and in the water column at a temperature of 10°C after 5 d of experimentation. In addition, a growth of CBI was observed in the sediment which is rich in organic matter at 20°C. The results of this study indicate: (1) the higher concentrations of the CBI observed in di erent points in the water column of Vidy Bay may not be explained only by the recent contribution of the three potential sources of the Bay contamination including STP and the Chamberonne and Flon Rivers, but also by the persistence, removal from sediment and multiplication of CBI in the sediment and water column; (2) the sediment of Vidy Bay constitute a reservoir of CBI and can even support their growth; and (3) the CBI not only survive in sediments, but also can be remobilized and increased in the water column, therefore, it become a permanent microbiological pollution in Vidy Bay.     

Natal site and offshore swimming influence fitness and long-distance ocean transport in young sea turtles

Although long-distance transport of marine organisms is constrained by numerous oceanic and biological factors, some species have evolved life-histories reliant on such movements. We examine the factors that promote long-distance transport in a transoceanic migrant, young loggerhead sea turtles (Caretta caretta), from the southeastern U.S. Empirical data from near-surface buoys and simulations in two ocean circulation models indicated that passive drifters are often retained for long periods shoreward of oceanic fronts that delineate coastal and offshore waters. Further simulations revealed that offshore swimming aided newly hatched turtles in moving past fronts and increased turtles’ probability of survival, reaching distant foraging grounds, and encountering favorable temperatures. Swimming was most beneficial in regions that were more favorable under scenarios assuming passive drift. These results have broad implications for understanding the movement processes of many marine species, highlighting likely retention of more planktonic species and potential for dispersal in more nektonic species.     

Temperature, salinity and growth rate dependences of Mg/Ca and Sr/Ca ratios of the skeleton of the sea urchin Paracentrotus lividus (Lamarck): an experimental approach

The skeletal Mg/Ca ratio of echinoderms is known to increase with temperature but the relation has never been established in controlled experimental conditions. The present study investigated the effect of temperature, salinity and growth rate on Mg/Ca and Sr/Ca ratios in calcite skeletons of juvenile sea urchins grown in experimental conditions. Mg/Ca ratio was positively related to temperature, increasing until a plateau at high but field occurring temperatures. It was not linked to salinity nor growth rate. We suggest that this plateau is due to properties of the organic matrix of mineralization and recommend to take it into account for the use of Mg/Ca as proxy of seawater Mg/Ca. Skeletal Sr/Ca ratio was mainly dependent on temperature and growth rate, as usually observed in calcite skeletons.     

Helium isotopic constraints on simulated ocean circulations: implications for abyssal theories

There is ongoing controversy as to the dynamical significance of geothermal heat flow in shaping the abyssal circulation. In this paper, we gauge the impact of geothermal heating and vertical mixing parameterizations in the general circulation model OPA. The experiments are evaluated by comparing simulated mantle ³He with observations collected during the GEOSECS and WOCE programs. This tracer is particularly adapted to the validation of our numerical simulations because its injection into the ocean interior is tightly linked to geothermal processes. In agreement with previous studies, the model circulation is found very sensitive to the parameterization of the vertical mixing. The meridional overturning circulation (MOC) is globally intensified when moving from a constant mixing to a version with enhanced mixing near the ocean bottom, with the most drastic variation observed for AABW (+ 50%). Adding the geothermal heat flux mainly affects AABW circulation in the model, enhancing it all the more as the meridional circulation is slow (low vertical mixing), but proportionally less so when it is more vigorous (enhanced vertical mixing). This can be understood from the requirement of the abyssal ocean to maintain heat balance. The evaluation with mantle ³He simulations reveals that the version with low vertical mixing, with its sluggish circulation, produces unrealistically high a ³He isotopic composition. However, with a vertical mixing that is enhanced at depth, the ³He distribution falls within an acceptable range of values in the deep ocean. Finally, adding the geothermal heating to this enhanced mixing case provides a substantial improvement of the simulation of AABW in all basins but the Indian Ocean. ³He isotopic composition is then in good agreement with the observations. Taken jointly with observational estimates of the MOC intensity, these independent isotopic constraints suggest that both geothermal heating and enhanced diapycnal mixing at depth are key ingredients in the realistic simulation of abyssal circulation.     

Modelling the Karenia mikimotoi bloom that occurred in the western English Channel during summer 2003

Observations from space and in situ from the R.V. Corystes 8/03 Cruise show that a massive Karenia mikimotoi bloom occured during summer 2003 in the western English Channel. Due to exceptional climatoligical conditions that occured in June 2003, the installation of a very strong thermocline enhanced the development of a massive bloom over 1 million cells l⁻¹ in the Central English Channel. This paper presents the application of a mathematical model of this species, previously developed in for the Bay of Biscay, into a general 3D model of the primary production of the English Channel and southern Bight of the North Sea. Allelopathic interactions exerted by K. mikimotoi on other phytoplankton species and the role of agitation in the mortality of this species are taken into account. The model includes the dynamics of the bloom and consequently reproduces with good agreement the geographical distribution of the K. mikimotoi bloom both surface and subsurface. The model suggests that the apparent transport of the bloom towards the French coasts as inferred from the satellite observation was not due to advection but was only caused by the establishment of suitable conditions. The sensivity of the K. mikimotoi distribution to boundary conditions, initialization and the role of turbulence is discussed.     

混合培养微生物利用甘油补料发酵生产乙醇研究

采用浸麻芽孢杆菌和红曲菌990691用甘油混合发酵生产乙醇.结果表明,分批发酵中高浓度的甘油对乙醇发酵有着较强的抑制作用,分批发酵最佳甘油浓度为0.217 mol L-1.在分批发酵的基础上补料发酵,考察了不同甘油浓度的补料液和不同补料时间对乙醇发酵的影响.最终确定乙醇补料发酵较优的工艺条件为:反应器1 L,装液量700 mL红曲发酵液,甘油初始浓度为0.217 mol L-1,以补料方式每隔60 h分5次补加0.217 mol L-1甘油浓度的红曲发酵液,每次补加100 mL,发酵培养360 h.当乙醇最高浓度达0.221 mol L-1,乙醇总产率0.628 mmol h-1,乙醇/甘油转化率达87%(mol mol-1).与分批发酵相比,补料发酵很大程度解除了高浓度甘油的抑制作用,有效地利用了甘油,提高了乙醇的产量,且乙醇产率较为稳定.     

Sensitivity of system stability to model structure

A community is stable, and resilient, if the levels of all community variables can return to the original steady state following a perturbation. The stability properties of a community depend on its structure, which is the network of direct effects (interactions) among the variables within the community. These direct effects form feedback cycles (loops) that determine community stability. Although feedback cycles have an intuitive interpretation, identifying how they form the feedback properties of a particular community can be intractable. Furthermore, determining the role that any specific direct effect plays in the stability of a system is even more daunting. Such information, however, would identify important direct effects for targeted experimental and management manipulation even in complex communities for which quantitative information is lacking. We therefore provide a method that determines the sensitivity of community stability to model structure, and identifies the relative role of particular direct effects, indirect effects, and feedback cycles in determining stability. Structural sensitivities summarize the degree to which each direct effect contributes to stabilizing feedback or destabilizing feedback or both. Structural sensitivities prove useful in identifying ecologically important feedback cycles within the community structure and for detecting direct effects that have strong, or weak, influences on community stability. The approach may guide the development of management intervention and research design. We demonstrate its value with two theoretical models and two empirical examples of different levels of complexity.     

Lipid components as a measure of nutritional condition in fish larvae (Pleuragramma antarcticum) in East Antarctica

Pleuragramma antarcticum is a key component of the neritic assemblages in the Antarctic coastal waters. Larvae of this species were sampled from 2008 to 2011 in the Dumont d’Urville Sea (East Antarctica). The lipid class composition [triacylglycerols (TAG), cholesterol (Chol) and polar lipids (PL)] of larvae was measured to assess the larval condition. The total amount of lipids was linearly related to the quantity of structural polar lipids, suggesting that growth is favored over lipid storage. The TAG:Chol ratio showed interannual variability in the condition of fish larvae, probably related to prey availability. Nevertheless, the essential fatty acids composition of polar lipids illustrates that larvae with low levels of TAG:Chol could be either growing or under starvation. Only the combination of a low TAG:Chol ratio and low polar lipids content, which can also be mobilized during starvation periods, allowed identification of larvae in poor condition. This lipid condition index should be of great assistance to evaluate the probability of survival of P. antarcticum larvae in long-term monitoring. It has widespread applicability and should also be useful in the diagnosis of nutritional condition in other species.     

Incorporating multidimensional behavior into a risk management tool for a critically endangered and migratory species

Conservation of migratory species exhibiting wide-ranging and multidimensional behaviors is challenged by management efforts that only utilize horizontal movements or produce static spatial–temporal products. For the deep-diving, critically endangered eastern Pacific leatherback turtle, tools that predict where turtles have high risks of fisheries interactions are urgently needed to prevent further population decline. We incorporated horizontal–vertical movement model results with spatial–temporal kernel density estimates and threat data (gear-specific fishing) to develop monthly maps of spatial risk. Specifically, we applied multistate hidden Markov models to a biotelemetry data set (n = 28 leatherback tracks, 2004–2007). Tracks with dive information were used to characterize turtle behavior as belonging to 1 of 3 states (transiting, residential with mixed diving, and residential with deep diving). Recent fishing effort data from Global Fishing Watch were integrated with predicted behaviors and monthly space-use estimates to create maps of relative risk of turtle–fisheries interactions. Drifting (pelagic) longline fishing gear had the highest average monthly fishing effort in the study region, and risk indices showed this gear to also have the greatest potential for high-risk interactions with turtles in a residential, deep-diving behavioral state. Monthly relative risk surfaces for all gears and behaviors were added to South Pacific TurtleWatch (SPTW) ( https://www.upwell.org/sptw ), a dynamic management tool for this leatherback population. These modifications will refine SPTW's capability to provide important predictions of potential high-risk bycatch areas for turtles undertaking specific behaviors. Our results demonstrate how multidimensional movement data, spatial–temporal density estimates, and threat data can be used to create a unique conservation tool. These methods serve as a framework for incorporating behavior into similar tools for other aquatic, aerial, and terrestrial taxa with multidimensional movement behaviors.