Trends in landings of fish species potentially affected by climate change in Portuguese fisheries

Fisheries are an important source of food, with a high economic value and social significance. The present worrying situation of the world fisheries is the result of the interaction between different factors (e.g. climatic variations, natural oscillations, technological innovation), but the greatest challenges are overfishing and climate change. The species richness of the Portuguese coast is generally higher than that found in northern Europe and similar to that of the Mediterranean, since many species have their southern or northern distribution limits along the Portuguese coast. The zoogeographic importance of this latitudinal area has long been recognized, representing the transition between north-eastern Atlantic warm-temperate and cold-temperate regions, which makes the Portuguese coast an area of great sensitivity to the detection of climate change. Official landing data for commercial species that have the Portuguese coast as their distribution limit were analysed together with sea surface temperature for the period of 1927–2011. In general, landings of species with affinity for temperate waters presented a decreasing trend, whereas species with affinity for subtropical/tropical waters showed an increasing trend. These variations were associated with variation in temperature: lower landings of temperate species occurred mainly in warm years, whereas landings of subtropical/tropical species presented an opposite trend, with higher landings in warm years. Preparing for the impacts of climate change is crucial for the sustainability of fisheries. Management should take into consideration information about environmental factors that affect species distribution and abundance.     

In vitro Methylation of Arsenite in Flemish giant rabbit Cytosol

The formation of ⁷⁴As‐monomethyIarsonic acid and ⁷⁴As‐dimethylarsinic acid from carrier‐free radiolabelled ⁷⁴As‐arsenite was evaluated in an assay mixture containing 17.6% liver cytosol from the Flemish Giant rabbit. The optimal incubation temperature and pH were respectively, 39°C and 7.6. After a 2h incubation about 90% of ⁷⁴As was protein bound. Protein bound ⁷⁴As was released by hot 2 M HNO₃ (1 min, 110°C). The treatment did not destroy methylated As‐species. Up to 70% of the carrier‐free ⁷⁴As‐arsenite was methylated. Liver cytosol was stored, without loss of activity, in liquid nitrogen in the presence of 2 mM glutathione. The optimal s‐adenosyl‐methionine concentration was 1.7mM. Formation of ⁷⁴As‐monomethylarsonic acid and ⁷⁴As‐dimethylarsinic acid increased up to a glutathione concentration of respectively 10 and 20 mM. Methylation also went through in the presence of other reducing agents and proved to be ATP dependent.     

Timing matters when assessing dominance and chemical signatures in the paper wasp Polistes dominulus

A recent study (Izzo et al., Behav Ecol Sociobiol 64: 857–864, 2010) reported that cuticular hydrocarbons (CHCs) correlate with fertility, not dominance, in the paper wasp Polistes dominulus thus contradicting the results of recent investigations which concluded that social dominance is the main determinant for CHC signatures in this species. We suggest here that different forms of dominance in the pre-nesting and post-nesting phases caused the apparently contradictory results. Thus the assumption that dominance behaviour in the pre-nesting stage is synonymous with dominance after colony foundation is incorrect. We provide standardised definitions for forms of “dominance” observed in the P. dominulus life cycle to avoid apparent discrepancies in the future among studies dealing with the same topics in different annual stages.     

Assessment of anthropogenic sources of water pollution using multivariate statistical techniques: a case study of the Alqueva’s reservoir, Portugal

Multivariate statistical techniques were applied to evaluate spatial/temporal variations, and to interpret water quality data set obtained at Alqueva reservoir (south of Portugal). The water quality was monitored at nine different sites, along the water line, over a period of 18 months (from January 2006 to May 2007) using 26 water quality parameters. The cluster analysis allowed the formation of five different similarity groups between sampling sites, reflecting differences on the water quality at different locations of the Alqueva reservoir system. The PCA/FA identified six varifactors, which were responsible for 64% of total variance in water quality data set. The principal parameters, which explained the variability of quality water, were total phosphorus, oxidability, iron, parameters that at high concentrations indicate pollution from anthropogenic sources, and herbicides indicative of an intensive agricultural activity. The spatial analysis showed that the water quality was worse in the north of the reservoir.     

Poliovirus and Other Enteroviruses from Environmental Surveillance in Italy, 2009–2015

Within the initiatives for poliomyelitis eradication by WHO, Italy activated an environmental surveillance (ES) in 2005. ES complements clinical Acute Flaccid Paralysis (AFP) surveillance for possible polio cases, detects poliovirus circulation in environmental sewage, and is used to monitor transmission in communities. In addition to polioviruses, the analyses comprised: (i) the monitoring of the presence of non-polio enteroviruses in sewage samples and (ii) the temporal and geographical distribution of the detected viruses. From 2009 to 2015, 2880 sewage samples were collected from eight cities participating in the surveillance. Overall, 1479 samples resulted positive for enteroviruses. No wild-type polioviruses were found, although four Sabin-like polioviruses were detected. The low degree of mutation found in the genomes of these four isolates suggests that these viruses have had a limited circulation in the population. All non-polio enteroviruses belonged to species B and the most frequent serotype was CV-B5, followed by CV-B4, E-11, E-6, E-7, CV-B3, and CV-B2. Variations in the frequency of different serotypes were also observed in different seasons and/or Italian areas. Environmental surveillance in Italy, as part of the ‘WHO global polio eradication program’, is a powerful tool to augment the polio surveillance and to investigate the silent circulation or the re-emergence of enteroviruses in the population.     

Testing kernel density reconstruction for Lagrangian photochemical modelling

In recent years, a number of pioneering works have shown as Lagrangian models can be of great interest when dealing with photochemistry, provided that special care is given in the reconstruction of chemicals concentration in the atmosphere. Density reconstruction can be performed through the so-called “box counting” method: an Eulerian grid for chemistry is introduced and density is computed counting particles in each box. In this way one of the main advantages of the Lagrangian approach, the grid independence, is lost. In this paper, a new approach to Lagrangian photochemical modelling is investigated and the chemical module of the Photochemical Lagrangian Particle Model (PLPM) is described and fully tested for stability, reliability and computational weight. Photochemical reactions are treated in PLPM by means of the complex chemical mechanism SAPRC90 and four density reconstruction methods have been developed, based on the kernel density estimator approach, in order to obtain grid-free accurate concentrations.     

Identification of a case of maternal uniparental disomy of chromosome 10 associated with confined placental mosaicism

We report a case of maternal uniparental disomy of chromosome 10 discovered after chorionic villus sampling (CVS). Direct preparations revealed mosaic trisomy 10, while cultured CVS cells, as well as amniotic fluid cells, showed only a normal 46,XY complement. DNA analysis using microsatellite markers showed both chromosomes 10 to have been inherited from the mother. The pregnancy was complicated by polyhydramnios. A phenotypically normal male infant of appropriate size was delivered by Caesarean section at 41 weeks' gestation. Since only the direct preparations showed trisomy 10, this case illustrates the importance of CVS direct preparations in the detection of pregnancies at risk of uniparental disomy (UPD). Although the increased frequency of confined placental mosaicism (CPM) diagnosed when direct preparations are performed has been viewed negatively, identification of both CPM and UPD may have biological and clinical significance for a pregnancy. Even though only a single case of maternal disomy 10 is reported here, the apparently normal phenotype provides evidence that there are no major imprinted loci on chromosome 10 that affect in utero growth and development. However, other potential effects such as mental retardation will require long-term follow-up of this as well as additional cases.     

Landslides into reservoirs and their impacts on banks

Mass wasting processes, like slope failures, on the margins of dam reservoirs, lakes, bays and oceans may generate large water waves that can produce disasters due to flooding over the banks, run up along the shoreline and overtopping dam crests. Therefore, the study of slope failures, the subsequent generation of impulse waves and their consequences are of paramount importance for safety. In this paper the generation and propagation of water waves in reservoirs induced by landslides and their impact on banks were investigated by means of a laboratory study carried out at University of Coimbra wave channel, in a flume measuring 12.0 m  ×  1.5 m  ×  1.0 m (L  ×  H  ×  W), where two banks with variable slope were placed. The study considered the sliding of calcareous blocks over a sliding slope bank into the reservoir, the generation of impulse waves, their propagation in the reservoir and their impact on the downstream bank. A number of waves were generated by different fallings of calcareous blocks, considering different volumes, sliding slopes, initial positions and reservoir depths. All fallings were recorded by video-camera and the results were processed afterwards to obtain the time history of the falling. The water surface variations due to transient waves were measured at five gauges placed between the banks. The waves overtopping and breaking on the downstream bank were also filmed using a video camera, and the hydrodynamic forces on this bank were also measured using four pressure transducers.     

Prenatal diagnosis of X-linked retinitis pigmentosa (RP) in five pregnancies at risk

Five pregnancies at risk for X-linked retinitis pigmentosa (RP) have been monitored by first-trimester prenatal diagnosis using DNA markers flanking the RP2 and RP3 loci. Three affected and two unaffected fetuses, including a female carrying a wild-type genotype, were predicted on the basis of marker segregation and estimation of the recombination fraction.