Prevalence of Human Noroviruses in Frozen Marketed Shellfish,Red Fruits and Fresh Vegetables

Noroviruses (NoVs), currently recognised as the most common human food-borne pathogens, are ubiquitous in the environment and can be transmitted to humans through multiple foodstuffs. In this study, we evaluated the prevalence of human NoV genogroups I (GI) and II (GII) in 493 food samples including soft red fruits (n = 200), salad vegetables (n = 210) and bivalve mollusc shellfish (n = 83), using the Bovine Enterovirus type 1 as process extraction control for the first time. Viral extractions were performed by elution concentration and genome detection by TaqMan Real-Time RT-PCR (RT-qPCR). Experimental contamination using hepatitis A virus (HAV) was used to determine the limit of detection (LOD) of the extraction methods. Positive detections were obtained from 2 g of digestive tissues of oysters or mussels kept for 16 h in seawater containing 2.0–2.7 log₁₀ plaque-forming units (PFU)/L of HAV. For lettuces and raspberries, the LOD was, respectively, estimated at 2.2 and 2.9 log₁₀ PFU per 25 g. Of the molluscs tested, 8.4 and 14.4 % were, respectively, positive for the presence of GI NoV and GII NoV RNA. Prevalence in GI NoVs varied from 11.9 % for the salad vegetables samples to 15.5 % for the red soft fruits. Only 0.5 % of the salad and red soft fruits samples were positive for GII NoVs. These results highlight the high occurrence of human NoVs in foodstuffs that can be eaten raw or after a moderate technological processing or treatment. The determination of the risk of infection associated with an RT-qPCR positive sample remains an important challenge for the future.     

Management of adverse effects of a public water supply well field on the aquatic habitat of a stratified drift stream in eastern Connecticut.

A study was conducted to determine the effect of water withdrawals from the University of Connecticut's (Storrs) water supply wells on the fisheries habitat of the Fenton River adjacent to the well field. The study was designed to investigate the relationships between in-stream flow and selected fish habitat in the section of the Fenton River situated in the main zone of influence of the pumping field. With the aid of historical data, new data collection, and mathematical simulation modeling, the relation between the magnitude and timing of groundwater withdrawals on the stage and flow of water in the stream was derived. Fish sampling and habitat modeling were used to assess the effects of human influence on certain reaches of the Fenton River. Among the various water management scenarios studied, several are presented that would optimize water withdrawals, while minimizing adverse effects on the stream flow and in-stream habitat.     

Road-tunnel fires: Risk perception and management strategies among users

The present study was aimed at investigating road users’ perceptions and behaviors in case of a fire in a tunnel. It is grounded on the idea that in order to effectively prevent accidents and fires in tunnels, it may be useful to take tunnel users’ beliefs, representations, and coping strategies into account [Kouabenan, D.R., 1998. Beliefs and the perception of risks and accidents. Risk Analysis, an International Journal 18, 243–252; Kouabenan, D.R., 2001. Management de la sécurité: rôle des croyances et des perceptions. In : Lévy-Léboyer, C., Huteau, M., Louche, C., Rolland, J.P. (Eds.), RH: Les apports de la psychologie du travail. Les Editions d’Organisation, Paris, pp. 453–474; Kouabenan, D.R., Cadet, B., 2005. Risk evaluation and accident analysis. Advances in Psychology Research 36, 61–80; Kouabenan, D.R., Dubois, M., Scarnato, F., De Gaudemaris, R., Mallaret, M.R., 2007. Methicillin-Resistant Staphylococcus Aureus Risk Perception by Healthcare Personnel in a Public Hospital. Social Behavior and Personality, 35, 1] One hundred and fifty-one road users (firemen, truck drivers, regular drivers, and driving-school students) filled out a questionnaire measuring their perceptions of risks and control in road tunnels, their awareness of safety and rescue devices, their level of anxiety, and their behavioral intentions in the event of a fire in a road tunnel. The results indicated a relationship between fire-risk perception, awareness of rescue and safety devices, and road-tunnel experience; a tendency toward comparative optimism (CO); an effect of perceived control on optimism; and a relationship between CO and awareness of safety devices. A significant interaction was found between tunnel users’ anxiety level and their perceived control over the situation. The evacuation behaviors and coping strategies reported by the participants were far from reflecting the expected behaviors. Recommendations for a long-term prevention policy bearing jointly on beliefs, behaviors, improved information and warning systems are suggested.     

A new technique for ordering asymmetrical three-dimensional data sets in ecology

The aim of this paper is to tackle the problem that arises from asymmetrical data cubes formed by two crossed factors fixed by the experimenter (factor A and factor B, e.g., sites and dates) and a factor which is not controlled for (the species). The entries of this cube are densities in species. We approach this kind of data by the comparison of patterns, that is to say by analyzing first the effect of factor B on the species-factor A pattern, and second the effect of factor A on the species-factor B pattern. The analysis of patterns instead of individual responses requires a correspondence analysis. We use a method we call Foucart's correspondence analysis to coordinate the correspondence analyses of several independent matrices of species x factor A (respectively B) type, corresponding to each modality of factor B (respectively A). Such coordination makes it possible to evaluate the effect of factor B (respectively A) on the species-factor A (respectively B) pattern. The results obtained by such a procedure are much more insightful than those resulting from a classical single correspondence analysis applied to the global matrix that is obtained by simply unrolling the data cube, juxtaposing for example the individual species x factor A matrices through modalities of factor B. This is because a single global correspondence analysis combines three effects of factors in a way that cannot be determined from factorial maps (factor A, factor B, and factor A x factor B interaction) whereas the applications of Foucart's correspondence analysis clearly discriminate two different issues. Using two data sets, we illustrate that this technique proves to be particularly powerful in the analyses of ecological convergence which include several distinct data sets and in the analyses of spatiotemporal variations of species distributions.     

Status of feral oilseed rape in Europe: its minor role as a GM impurity and its potential as a reservoir of transgene persistence

Purpose  

Feral oilseed rape has become widespread in Europe on waysides and waste ground. Its potential as a source of GM impurity in oilseed rape harvests is quantified, for the first time, by a consistent analysis applied over a wide range of study areas in Europe.     

The dimensions of land use change in rural landscapes: lessons learnt from the GB Countryside Surveys

Rural landscapes are highly dynamic and their change impacts on a number of ecological processes such as the dynamics of biodiversity. Although a substantial amount of research has focused on quantifying these changes and their impact on biodiversity, most studies have focused on single dimensions of land use change. This lack of integration in land use change studies can be explained by the fact that data on the spatial, temporal, and ecological dimensions of land use are seldom available for the same geographical location. In this paper, the benefits of taking into account these three dimensions are illustrated with results derived from the Great Britain Countryside Surveys (CS), a large-scale monitoring programme designed to assess change in the extent and ecological condition of British habitats. The overview of CS results presented in this paper shows that (1) changes in land use composition will translate into a variety of spatial patterns; (2) the temporal stability of land use is often lower than can be expected; and (3) there can be large-scale shifts in the ecological condition of the land use types that form our rural landscapes. The benefits of integrated rural landscape studies are discussed in the context of other national monitoring programmes.     

Geomechanical analysis of the Naylor Field,Otway Basin,Australia: Implications for CO2 injection and storage

A geomechanical assessment of the Naylor Field, Otway Basin, Australia has been undertaken to investigate the possible geomechanical effects of CO₂ injection and storage. The study aims to evaluate the geomechanical behaviour of the caprock/reservoir system and to estimate the risk of fault reactivation. The stress regime in the onshore Victorian Otway Basin is inferred to be strike–slip if the maximum horizontal stress is calculated using frictional limits and DITF (drilling induced tensile fracture) occurrence, or normal if maximum horizontal stress is based on analysis of dipole sonic log data. The NW–SE maximum horizontal stress orientation (142°N) determined from a resistivity image log is broadly consistent with previous estimates and confirms a NW–SE maximum horizontal stress orientation for the Otway Basin.An analytical geomechanical solution is used to describe stress changes in the subsurface of the Naylor Field. The computed reservoir stress path for the Naylor Field is then incorporated into fault reactivation analysis to estimate the minimum pore pressure increase required to cause fault reactivation (ΔP_p).The highest reactivation propensity (for critically-oriented faults) ranges from an estimated pore pressure increase (ΔP_p) of 1 MPa to 15.7 MPa (estimated pore pressure of 18.5–33.2 MPa) depending on assumptions made about maximum horizontal stress magnitude, fault strength, reservoir stress path and Biot's coefficient. The critical pore pressure changes for known faults at Naylor Field range from an estimated pore pressure increase (ΔP_p) of 2 MPa to 17 MPa (estimated pore pressure of 19.5–34.5 MPa).     

Avoidance of low doses of naphthalene by Collembola

The introduction of behavioural aspects of soil animals in ecological risk assessment would allow us to better assess soil quality, all the more if a range of animal populations are considered. We compared the avoidance behaviour of several strains of springtails (Arthropoda: Collembola) obtained from different soils. Naphthalene, a polycyclic aromatic hydrocarbon (PAH), widely represented in soils polluted with hydrocarbons, was tested in aqueous solutions on nine springtail species issuing from four sites. Fine quartz sand saturated with an aqueous solution of naphthalene was avoided by most of the tested species, avoidance being, however, detected down to a concentration of 0.030 mg L(-1). Folsomia candida (Isotomidae) was shown to be relatively tolerant to pollutants compared to other Collembola such as Mesaphorura macrochaeta, Mesaphorura yosii (Onychiuridae), Parisotoma notabilis (Isotomidae) and Arrhopalites caecus (Arrhopalitidae). Differences between strains could not be explained by properties of the original soils.     

Availability organisational analysis: Is it a hazard for safety?

This main issue of this article analyses the possible way to use for availability improvement, the organisational analysis methodology initially developed for accident safety investigations. As the last decade examples in the industrial world prove that some organisational weaknesses could either impact safety or availability, we have for purpose to make some important clarifications, with the help of the organisational paradigm, and grounded on our knowledge of safety accidents or local inquiries in hazardous technical complex systems.We will first give our definition of an availability event, by comparison with a safety event and recall what is for us an organisational analysis. Then we will consider the safety organisational paradigm pathogenic factors in wondering if these factors could also be seen as pathogenic factors for availability; or if specific availability pathogenic factors can be inferred from these safety pathogenic factors.In the end we will try to assess the common points and the differences between an availability oriented organisational analysis and a safety oriented one, with a particular attention to possible negative follows-up on safety issues and to the methodology issue.     

Evidence for early intracellular accumulation of volatile compounds during spadix development in Arum italicum L. and preliminary data on some tropical Aroids

Staining and histochemistry of volatile organic compounds (VOCs) were performed at different inflorescence developmental stages on nine aroid species; one temperate, Arum italicum and eight tropical from the genera Caladium, Dieffenbachia and Philodendron. Moreover, a qualitative and quantitative analysis of VOCs constituting the scent of A. italicum, depending on the stage of development of inflorescences was also conducted. In all nine species, vesicles were observed in the conical cells of either the appendix or the stamens (thecae) and the staminodes. VOCs were localised in intracellular vesicles from the early stages of inflorescence development until their release during receptivity of gynoecium. This localisation was observed by the increase of both number and diameter of the vesicles during 1 week before receptivity. Afterwards, vesicles were fewer and smaller but rarely absent. In A. italicum, staining and gas chromatography analyses confirmed that the vesicles contained terpenes. The quantitatively most important ones were the sesquiterpenes, but monoterpenes were not negligible. Indeed, the quantities of terpenes matched the vesicles’ size evolution during 1 week. Furthermore, VOCs from different biosynthetic pathways (sesquiterpenes and alkanes) were at their maximum quantity 2 days before gynoecium receptivity (sesquiterpenes and alkanes) or during receptivity (isobutylamine, monoterpenes, skatole and p-cresol). VOCs seemed to be emitted during gynoecium receptivity and/or during thermogenesis, and FADs are accumulated after thermogenesis in the spadix. These complex dynamics of the different VOCs could indicate specialisation of some VOCs and cell machinery to attract pollinators on the one hand and to repulse/protect against phytophagous organisms and pathogens after pollination on the other hand.