Use of degenerate primers in rapid generation of microsatellite markers in Panicum maximum

Guineagrass (Panicum maximum Jacq.) is an important forage grass of tropical and semi-tropical regions, largely apomictic and predominantly exist in tetraploid form. For molecular breeding work, it is prerequisite to develop and design molecular markers for characterization of genotypes, development of linkage map and marker assisted selection. Hence, it is an important researchable issue to develop molecular markers in those crops where such information is scanty. Among many molecular markers, microsatellites or simple sequence repeat (SSR) markers are preferred markers in plant breeding. Degenerate primers bearing simple sequence repeat as anchor motifs can be utilized in rapid development of SSR markers; however selection of suitable degenerate primers is a prerequisite for such procedure so that SSR enriched genomic library can be made rapidly. In the present study seven degenerated primers namely KKVRVRV(AG)10, KKVRVRV(GGT)5, KKVRVRV(CT)10, KKVRVRV(AAT)6, KKVRVRV(GTG)6, KKVRVRV(GACA)5, and KKVRVRV(CAA)6 were used in amplification of Panicum maximum genomic DNA. Primers with repeat motifs (GGT)5 and (AAT)6 have not reacted whereas (AG)10, (GACA)5 and (CAA)6 highly informative as they have generated many DNA fragments ranging from 250 to 1600 bps as revealed from the results obtained with restriction digestion of recombinant plasmids. Primer with (CT)10 anchor repeat, amplified fragments of high molecular weight where as (GTG)6 primer generated only six bands with low concentration indicating less suitability of these primerin SSR markers development in P maximum.     

Some stochastic differential equation models of an aquatic ecosystem

A set of stochastic differential equations has been used to model an aquatic ecosystem. The randomness in the system has been introduced through initial conditions of the state variables, parameters, and input variables (light and temperature). These models were analysed using Monte Carlo simulation procedures and the results were similar to those observed in the experimental and field data. They were different, however, from the results of a deterministic simulation. This approach allows us to incorporate the maximum degree of information in the model and to study the behavior of the system without arbitrarily manipulating the values of the parameters. Some possible refinements and generalizations of this approach are also discussed.     

Effect of land use land cover change on soil erosion potential in an agricultural watershed

Universal soil loss equation (USLE) was used in conjunction with a geographic information system to determine the influence of land use and land cover change (LUCC) on soil erosion potential of a reservoir catchment during the period 1989 to 2004. Results showed that the mean soil erosion potential of the watershed was increased slightly from 12.11 t ha^???1 year^???1 in the year 1989 to 13.21 t ha^???1 year^???1 in the year 2004. Spatial analysis revealed that the disappearance of forest patches from relatively flat areas, increased in wasteland in steep slope, and intensification of cultivation practice in relatively more erosion-prone soil were the main factors contributing toward the increased soil erosion potential of the watershed during the study period. Results indicated that transition of other land use land cover (LUC) categories to cropland was the most detrimental to watershed in terms of soil loss while forest acted as the most effective barrier to soil loss. A p value of 0.5503 obtained for two-tailed paired t test between the mean erosion potential of microwatersheds in 1989 and 2004 also indicated towards a moderate change in soil erosion potential of the watershed over the studied period. This study revealed that the spatial location of LUC parcels with respect to terrain and associated soil properties should be an important consideration in soil erosion assessment process.     

Arsenate and arsenite-induced inhibition and recovery in two diazotrophic cyanobacteria Nostoc muscorum and Anabaena sp.: study on time-dependent toxicity regulation

Environmental Science and Pollution Research - Exposure time, metal bio-accumulation, and upregulation of ascorbate-glutathione (AsA-GSH) cycle are the key factor that provide tolerance against...     

Performance enhancement of the photovoltaic system with different cooling methods

Environmental Science and Pollution Research - Solar energy has been a vital renewable energy source for humanity for decades. Researchers have proposed many strategies to harness the same but...     

Kinetics of the biodegradation pathway of endosulfan in the aerobic and anaerobic environments

The enriched mixed culture aerobic and anaerobic bacteria from agricultural soils were used to study the degradation of endosulfan (ES) in aqueous and soil slurry environments. The extent of biodegradation was ∼95% in aqueous and ∼65% in soil slurry during 15 d in aerobic studies and, ∼80% in aqueous and ∼60% in soil slurry during 60 d in anaerobic studies. The pathways of aerobic and anaerobic degradation of ES were modeled using combination of Monod no growth model and first order kinetics. The rate of biodegradation of β-isomer was faster compared to α-isomer. Conversion of ES to endosulfan sulfate (ESS) and endosulfan diol (ESD) were the rate limiting steps in aerobic medium and, the hydrolysis of ES to ESD was the rate limiting step in anaerobic medium. The mass balance indicated further degradation of endosulfan ether (ESE) and endosulfan lactone (ESL), but no end-products were identified. In the soil slurries, the rates of degradation of sorbed contaminants were slower. As a result, net rate of degradation reduced, increasing the persistence of the compounds. The soil phase degradation rate of β-isomer was slowed down more compared with α-isomer, which was attributed to its higher partition coefficient on the soil.     

Contribution of anthropogenic aerosols in direct radiative forcing and atmospheric heating rate over Delhi in the Indo-Gangetic Basin

Introduction  

The present work is aimed to understand direct radiation effects due to aerosols over Delhi in the Indo-Gangetic Basin (IGB) region, using detailed chemical analysis of surface measured aerosols during the year 2007.     

Profenofos induced modulation in physiological indices,genomic template stability and protein banding patterns of Anabaena sp. PCC 7120

To understand the mechanism underlying organophosphate pesticide toxicity, cyanobacterium Anabaena PCC 7120 was subjected to varied concentrations (0, 5, 10, 20 and 30 mg L^?1) of profenofos and the effects were investigated in terms of changes in cellular physiology, genomic template stability and protein expression pattern. The supplementation of profenofos reduced the growth, total pigment content and photosynthetic efficiency of the test organism in a dose dependent manner with maximum toxic effect at 30 mg L^?1. The high fluorescence intensity of 2′, 7′ –dichlorofluorescin diacetate and increased production of malondialdehyde confirmed the prevalence of acute oxidative stress condition inside the cells of the cyanobacterium. Rapid amplified polymorphic DNA (RAPD) fingerprinting and SDS-PAGE analyses showed a significant alteration in the banding patterns of DNA and proteins respectively. A marked increase in superoxide dismutase, catalase, peroxidase activity and a concomitant reduction in glutathione content indicated their possible role in supporting the growth of Anabaena 7120 up to 20 mg L^?1. These findings suggest that the uncontrolled use of profenofos in the agricultural fields may not only lead to the destruction of the cyanobacterial population, but it would also disturb the nutrient dynamics and energy flow.     

Distribution and ecotoxicological concerns of persistent organic pollutants in sediment from creek ecosystem

In order to study the distribution and ecotoxicological concerns of persistent organic pollutants, grab sediment samples were collected from different locations across Thane creek, India. Analyses of samples were carried out using gas chromatography (GC)–electron capture detector and GC–mass spectrometry techniques. In organochlorine pesticides (OCPs), DDT (1,1,1,-trichloro-2,2-bis(p-chlorophenyl) ethane), DDE (1,1-dichloro-2,2-bis(p-chlorophenyl) ethylene), DDD (1-chloro-4-(2,2-dichloro-1-(4-chlorophenyl)ethyl) benzene) and α, β, and γ conformer of hexachlorocyclohexane (HCH), and 9 polychlorinated biphenyls (PCBs) congeners were analyzed in surface sediment samples. Concentrations of these pollutants in grab sediment samples may indicate their current use and impact on marine ecosystem. Average concentrations of total DDT (including DDD and DDE), HCH, and Σ₉PCBs were found to be 4.9, 12.5, and 2.9 µg kg^?1(dry weight) respectively. High concentrations of OCPs and PCBs were found at discharge locations in creek compared to other locations. Location-wise distribution of OCPs and PCBs indicates their high concentrations at the waste water receiving point. Data were compared for ecotoxicological impacts based on the levels specified in the sediment quality standards of the US Environmental Protection Agency and the Canadian Council of Ministers of the Environment. γ-HCH was found to have maximum potential to induce ecotoxicological impacts.