Untested assumptions about within-species sample size and missing data in interspecific studies

Phylogenetic comparative studies rely on species-specific data that often contain missing values and/or differ in sample size among species. These phenomena may violate statistical assumptions about the non-random variance component in sampling effort. A major reason why this assumption is often not fulfilled is because the probability of being sampled (i.e., being captured or observed) may depend on species-specific characteristics. Here, we test this assumption by using information on within-species sample sizes and missing data from five independent comparative datasets of European birds. First, we show that the two estimates of data availability (missing values and within-species sample size) are positively correlated and are associated with research effort in general (the number of papers published). Second, we demonstrate biologically meaningful relationships between data availability and phenotypic traits. For example, population size, risk-taking, and habitat specialization independently predicted within-species sample size. The key determinants of missing data were population size and distribution range. However, data availability was not structured by phylogenetic relationships. These results indicate that the accuracy of sampling is repeatable and distributed non-randomly among species, as several species-specific attributes determined the probability of observation. Therefore, data availability seems to be a species-specific trait that can be shaped by ecology, life history, and behavior. Such relationships raise issues about non-random sampling, which requires attention in comparative studies.     

Feasibility of incorporating treated lignins in fiberboards made from agricultural waste

This paper studies the feasibility of incorporating treated lignins in fiberboards made from Vitis vinifera as an agricultural waste. The treated lignins are the purified Kraft lignin and the alkaline hydrolyzed Kraft lignin. V. vinifera raw material and its fibers were characterized in terms of chemical composition and the results were compared to other biomass species. The chemical composition of treated lignins shows that they have high purity compared to the lignin raw material. The lignin-V. vinifera fibreboards were produced on laboratory scale by adding powdered treated lignins to the material that had previously been steam exploded. Some of the important properties of fibreboards prepared using the treated lignins as natural adhesives were evaluated. These properties were density, thickness swelling, water absorption, modulus of elasticity, modulus of rupture, internal bond strength. The explored levels of treated lignins vary from 5% to 20%. The results showed that binderless fibreboards, fibreboards made from V. vinifera fibers and alkaline hydrolyzed Kraft lignin have weaker mechanical properties. However, the fibreboards obtained using purified Kraft lignin have good mechanical and water resistance properties which satisfy the requirements of the relevant standards specifications.     

Effects of plant morphology on small-scale distribution of invertebrates

Habitat structure influences organism communities by mediating interactions between individuals and species, affecting abundance and species richness. We examined whether variations in the morphology of soft-bottom plants affect their function as habitat and whether complex structured plants support higher macroinvertebrate abundance and species richness. Three Baltic Sea plant species were studied, together with artificial plants resembling each species. In a field collection, we found higher invertebrate abundance on the morphologically more complex plants Myriophyllum spicatum and Chara baltica than on the structurally simpler plant Potamogeton perfoliatus. In a colonization experiment, we found the highest invertebrate abundance on artificial M. spicatum but found no difference between natural plants. Invertebrate taxon richness displayed no consistent relationship with plant structural complexity. The results imply that plant morphology influences small-scale invertebrate distribution, partly supporting the hypothesis that structurally complex plants harbour higher invertebrate abundance.     

Lichens as an integrating tool for monitoring PAH atmospheric deposition: A comparison with soil, air and pine needles

The aim of this study was to validate lichens as biomonitors of PAH atmospheric deposition; for that, an inter-comparison between the PAH profile and concentrations intercepted in lichens with those of air, soil and pine needles was performed. The study was conducted in a petro-industrial area and the results showed that PAH profiles in lichens were similar to those of the air and pine needles, but completely different from those of soils. Lichens accumulated higher PAH concentrations when compared to the other environmental compartments and its concentrations were significantly and linearly correlated with concentrations of PAHs in soil; we showed that a translation of the lichen PAHs concentrations into regulatory standards is possible, fulfilling one of the most important requirements of using lichens as biomonitors. With lichens we were then able to characterize the air PAHs profile of urban, petro-industrial and background areas.     

210Pb-dating of a lake sediment core from Lough Carra (Co. Mayo, western Ireland): use of paleolimnological data for chronology validation below the 210Pb dating horizon

The chronologies and sediment accumulation rates for a lake sediment sequence from Lough Carra (Co. Mayo, western Ireland) were established by applying the constant initial concentration (CIC) and constant rate of supply (CRS) hypotheses to the measured ²¹⁰Pb_excess profile. The resulting chronologies were validated using the artificial fallout radionuclides ¹³⁷Cs and ²⁴¹Am, which provide independent chronostratigraphic markers for the second half of the 20th century. The validity of extrapolating the derived CIC and CRS dates below the ²¹⁰Pb dating horizon using average sedimentation rates was investigated using supplementary paleolimnological information and historical data. Our data confirm that such an extrapolation is well justified at sites characterised by relatively stable sedimentation conditions.     

Performance of data acceptance criteria over 50 months from an automatic real-time environmental radiation surveillance network

The automatic real-time environmental radiation surveillance network of Catalonia (Spain) comprises two subnetworks; one with 9 aerosol monitors and the other with 8 Geiger monitors together with 2 water monitors located in the Ebre river. Since September 2006, several improvements were implemented in order to get better quality and quantity of data, allowing a more accurate data analysis. However, several causes (natural causes, equipment failure, artificial external causes and incidents in nuclear power plants) may produce radiological measured values mismatched with the own station background, whether spurious without significance or true radiological values. Thus, data analysis for a 50-month period was made and allowed to establish an easily implementable statistical criterion to find those values that require special attention. This criterion proved a very useful tool for creating a properly debugged database and to give a quick response to equipment failures or possible radiological incidents. This paper presents the results obtained from the criterion application, including the figures for the expected, raw and debugged data, percentages of missing data grouped by causes and radiological measurements from the networks. Finally, based on the discussed information, recommendations for the improvement of the network are identified to obtain better radiological information and analysis capabilities.     

Identification of new ozonation disinfection byproducts of 17β-estradiol and estrone in water

Estrogens are a class of micro-pollutants found in water at low concentrations (in the ng L⁻¹ range), but often sufficient to exert estrogenic effects due to their high estrogenic potency. Disinfection of waters containing estrogens through oxidative processes has been shown to lead to the formation of disinfection byproducts, which may also be estrogenic. The present work investigates the formation of disinfection byproducts of 17β-estradiol (E2) and estrone (E1) in the treatment of water with ozone. Experiments have been carried out at two different concentrations of the estrogens in ground water (100 ng L⁻¹ and 100 μg L⁻¹) and at varying ozone dosages (0-30 mg L⁻¹). Detection of the estrogens and their disinfection byproducts in the water samples has been performed by means of ultra performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS) with a triple quadrupole (QqQ) and a quadrupole-time of flight (QqTOF) instrument. Both E2 and E1 have been found to form two main byproducts, with molecular mass (MM) 288 and 278 in the case of E2, and 286 and 276 in the case of E1, following presumably the same reaction pathways. The E2 byproduct with MM 288 has been identified as 10epsilon-17beta-dihydroxy-1,4-estradieno-3-one (DEO), in agreement with previously published results. The molecular structures and the formation pathways of the other three newly identified byproducts have been suggested. These byproducts have been found to be formed at both high and low concentrations of the estrogens and to be persistent even after application of high ozone dosages.     

Phototransformation of ibuprofen and ketoprofen in aqueous solutions

The UV (254 nm) and UV/VUV (254/185 nm) photolysis of two anti-inflammatory drugs, ibuprofen and ketoprofen, have been studied in aqueous solutions as a possible process for the removal of non-biodegradable compounds.We have examined the effects of dissolved oxygen and initial target concentration. Upon irradiation at 254 nm, the decomposition rate of ketoprofen is almost forty times higher as it of ibuprofen whilst VUV irradiation only increased the ibuprofen decomposition rate. The presence of dissolved oxygen accelerated the photodegradation of ibuprofen, whereas no effect was observed on the degradation of ketoprofen. The maximum quantum yield for the phototransformation was 0.2. The rate of mineralization in both cases was ∼60%, even after 1 h of treatment and this suggests the formation of stable by-products which were identified using GC-MS and HPLC-MS, respectively.     

Development of a fast instrumental method for the analysis of pharmaceuticals in environmental and wastewaters based on ultra high performance liquid chromatography (UHPLC)-tandem mass spectrometry (MS/MS)

This work describes the development, optimization and validation of an analytical method for the simultaneous detection and identification of 74 pharmaceutically active compounds (PhACs), from various therapeutic groups, in both environmental (ground and surface water) and wastewaters (WW). The method is based on the simultaneous extraction of all target compounds by solid phase extraction (SPE), using a hydrophilic-lipophilic balanced polymer followed by ultra high performance liquid chromatography (UHPLC) tandem mass spectrometry (MS/MS). Two selected reaction monitoring (SRM) transitions have been monitored per compound in order to fulfil the EC guidelines, as well as to ensure an accurate identification of target compounds in the samples. Quantification is performed by internal standard approach, applying 24 specific isotopically labeled compounds. The main advantages of the developed method, besides the selectivity and reliability of the results, is its high throughput. All compounds are extracted in a single step and the instrumental analysis lasts 5 min (NI mode) + 8 min (PI mode), allowing fast throughput of samples. The limits of detection range from 0.01 to 50 ng L⁻¹, depending on the matrix, for most of the compounds. Finally, the method developed has been applied to the analysis of pharmaceuticals in the Ebro river basin (NE Spain).     

Responses of evergreen and deciduous Quercus species to enhanced ozone levels

Plants of one evergreen oak (Quercus ilex) and three deciduous oaks (Q. faginea, with small leaves; Q. pyrenaica and Q. robur, with large leaves) were exposed both to filtered air and to enhanced ozone levels in Open-Top Chambers. Q. faginea and Q. pyrenaica were studied for the first time. Based on visible injury, gas exchange, chlorophyll content and biomass responses, Q. pyrenaica was the most sensitive species, and Q. ilex was the most tolerant, followed by Q. faginea. Functional leaf traits of the species were related to differences in sensitivity, while accumulated ozone flux via stomata (POD_1.6) partly contributed to the observed differences. For risk assessment of Mediterranean vegetation, the diversity of responses detected in this study should be taken into account, applying appropriate critical levels.