Preparation of high molecular weight DNA from hermatypic corals and its use for DNA hybridization and cloning

Previous attempts to extract high molecular weight DNA from hermatypic corals have failed because the starting material was mature tissue. The following paper describes the isolation of DNA from coral sperm which is of high molecular weight, and is suitable for DNA hybridization, digestion with restriction endonucleases and cloning. Gross DNA hybridization and hybridization with cloned repetitive DNA was used to investigate relatedness amongst members of the scleractinian coral family Acroporidae. Acropora formosa and A. pulchra were found to share a common (highly homologous) DNA sequence repeat; a related but less homologous sequence was present in A. latistella, and no homologous sequence was detected in Montipora digitata. These results imply a close taxonomic relationship between A. formosa and A. pulchra, and suggest that molecular criteria of this sort will be extremely useful in coral taxonomy.     

Mass transfer limitation of photosynthesis of coral reef algal turfs

Algal turfs are the major primary producing component on many coral reefs and this production supports higher levels in the complex reef trophic web. Rates of metabolism of algal turfs are related positively to water motion, consistent with limitation by the diffusion of a substance through a boundary layer. Based on engineering mass transfer theory, we hypothesized that photosynthesis of algal turfs is controlled by rates of mass transfer and responses of photosynthesis to increasing flow speed should be predicted by engineering correlations. This hypothesis was tested in ten experiments where photosynthesis was estimated in a flume/respirometer from changes in dissolved oxygen at eight flow speeds between 0.08 and 0.52 m/s. Flow in the flume and over the reef at Kaneohe Bay, Oahu, Hawaii was estimated using hot-film thermistor and electromagnetic current meters. Rates of photosynthesis were related positively to flow in all experiments and plots of the log of the average Sherwood number (Sh _meas) versus log Reynolds number (Re _D) for each experiment are lower than predicted for mass transfer through a turbulent boundary layer. Algal turf-covered plates are characterized as hydrodynamically transitional to fully rough surfaces and the lower than predicted slopes suggest that roughness reduces rates of mass transfer. A negative correlation between algal turf biomass and slopes of the log Sh _meas−log Re _D plots suggests that mass transfer to algal turfs is affected significantly by the physical structure of the algal community. Patterns of photosynthesis based on changes in dissolved oxygen and dissolved inorganic carbon concentrations (DIC) indicate that the flow speed effect is not the result of increased flux of oxygen from the algal turfs, and combined with the short response time to flow speed, suggest that DIC may limit rates of photosynthesis. Although there are differences between flow in the flume and flow over algal turfs on the reef, these results suggest that photosynthesis is controlled, at least in part, by mass transfer. The chemical engineering approach provides a framework to pose further testable hypotheses about how algal canopy height, flow oscillation, turbulence, and substratum roughness may modulate rates of metabolism of coral reef algal turfs.     

Emergence of increased division of labor as a function of group size

Empirical evidence suggests that division of labor in insect societies is positively related to group size both within and across taxa. Response threshold models (RTM) have been commonly used to analyze patterns of division of labor. However, these models have been explored empirically and theoretically for only a limited number of tasks, and few studies have examined predictions of the model as colony size and work availability change. We theoretically examine how group size influences division of labor using a fixed response-threshold model. We simultaneously explore how expected by-products of increased colony size, including demand (total work need relative to total work force available) and task number, affect this relationship. Our results indicate that both low demand and high task number positively influence division of labor. We suggest that these changes parallel what is observed within social groups as their size increases, and that, in part, the commonly observed increased division of labor with increasing group size is emergent.     

Regression modelling of hourly NOx and NO2 concentrations in urban air in London

Based on hourly measurements of NO_x NO₂ and O₃ and meteorological data, an ordinary least squares (OLS) model and a first-order autocorrelation (AR) model were developed to analyse the regression and prediction of NO_x and NO₂ concentrations in London. Primary emissions and wind speed are the most important factors influencing NO_x concentrations; in addition to these two, reaction of NO with O₃ is also a major factor influencing NO₂ concentrations. The AR model resulted in high correlation coefficients (R > 0.95) for the NO_x and NO₂ regression based on a whole year's data, and is capable of predicting NO₂ (R = 0.83) and NO_x (R = 0.65) concentrations when the explanatory variables were available. The analysis of the structure of regression models by Principal Component Analysis (PCA) indicates that the regression models are stable. The results of the OLS model indicate that there was an exceptional NO₂ source, other than primary emission and reaction of NO with O₃, in the air pollution episode in London in December 1991.     

Changes in concentration of five PCDD/F congeners after cooking beef from treated cattle

A large piece of meat taken from a single animal, which had been dosed with five selected PCDD/Fs, was prepared and cooked by a selection of different methods; burgers (fried, grilled, barbecued), roasts (cooked using conventional and microwave ovens) and stews (open pan and pressure cooked). For some of the cooking methods, concentration changes, on a whole product basis, were observed between raw and cooked product. However, in all cases these could be explained simply through changes arising from loss of water and elimination of PCDD/Fs with released fat. The total amounts of PCDD/Fs present in the system (including in released fat) remained unchanged. Dietary intake of PCDD/Fs could therefore be reduced by the removal of visible fat from meat before cooking and by discarding any fat released from foods during the cooking process.     

The distribution of metals in the forest floor of aged conifer stands at a plantation in Northern England

The distribution of the elements Cd, Cr, Cu, Mn, Ni, Pb, Sr, V and Zn has been examined in the horizons of soils under aged Sitka spruce (Picea sitchensis (Bong.) Carr.) stands at a plantation in Northern England. The stands are under first-generation cultivation and are up to 33 years old. Cadmium, Mn, Pb and Zn concentrations were consistently higher in the organic layers than in the underlying mineral soil. This contrasted with the situation for Sr and V. Cadmium, Pb and Zn all showed an increase in concentration in the L + F horizons with stand age and a corresponding increase in the difference between L + F horizon concentrations. Soil pH declined with increasing stand age. Cadmium, Cr, Pb and Zn were all present at higher concentrations in the F horizon than in any other, while Cu and Ni were relatively constant through all the horizons studied. For all nine elements, the H horizon was the largest store of the three organic layers. Calculated rates of accumulation of Cd, Pb and Zn in the L + F horizons gave good agreement with estimated regional atmospheric deposition rates. In comparison to atmospheric deposition, biological mobilisation and deposition of Cd, Pb and Zn make a relatively minor contribution to the surface soil metal burden. Cadmium appeared to be the most readily leached of these three metals from the forest floor, although some transfer of atmospherically-derived Pb to the H+ soil horizons was indicated.     

Use of X-ray absorption imaging to examine heterogeneous diffusion in fractured crystalline rocks

Heterogeneous diffusion in different regions of a fractured granodiorite from Japan has been observed and measured through the use of X-ray absorption imaging. These regions include gouge-filled fractures, recrystallized fracture-filling material and hydrothermally altered matrix. With the X-ray absorption imaging technique, porosity, relative concentration, and relative mass of an iodine tracer were imaged in two dimensions with a sub-millimeter pixel size. Because portions of the samples analyzed have relatively low porosity values, imaging errors can potentially impact the results. For this reason, efforts were made to better understand and quantify this error. Based on the X-ray data, pore diffusion coefficients (Dp) for the different regions were estimated assuming a single diffusion rate and a lognormal multirate distribution of Dp. Results show Dp for the gouge-filled fractures are over an order of magnitude greater than those of the recrystallized fracture-filling material, which in turn is approximately two times greater than those for the altered matrix. The recrystallized fracture-filling material was found to exhibit the greatest degree of variability. The results of these experiments also provide evidence that diffusion from advective zones in fractures through the gouge-filled fractures and recrystallized fracture-filling material could increase the pore space available for matrix diffusion. This evidence is important for understanding the performance of potential nuclear waste repositories in crystalline rocks as diffusion is thought to be an important retardation mechanism for radionuclides.     

Predictions by the Odor From Feedlots, Setback Estimation Tool (OFFSET) compared with observations by neighborhood monitors

A comparison between predicted and observed odor intensities at 20 neighborhood residences in the vicinity of seven various livestock farms in five different Minnesota counties was made to evaluate the Odor From Feedlots, Setback Estimation Tool (OFFSET) developed by the University of Minnesota. Observations by neighborhood monitors suggest that the OFFSET-predicted separation distances for annoyance-free frequencies of 99, 98, and 97% are large enough. The observations additionally indicate that predicted distances to obtain 94 and 91% annoyance-free frequencies may be large enough for some farms, but for other farms, greater distances may be needed. For two farms in the study, no significant difference between all of the observed and predicted intensities could be found. At four sites, a significant difference was found, and at three of these the difference was considerable. Odor emission rates used in the OFFSET model seem to describe the average emission fairly well for many odor sources, but improvement may be needed for some types of sources. Possible reasons for observations of annoying odor when not predicted include fluctuations in the odor emissions, wind speed fluctuations, topographic variation between sites, sensitivity differences by neighborhood monitors, and background emissions from other sources.     

Sorption and enhanced biodegradation of trace organics in a groundwater reclamation scheme— gloucester site, Ottawa, Canada

An inexpensive scheme to reclaim groundwaters contaminated by volatile organics at the Gloucester landfill site, near Ottawa, Canada, involved pumping of contaminated water into an conducted to evaluate the possible enhancement of biodegradation to improve this remedial measure.Batch experiments revealed that toluene (0.8–1.5 mg L⁻¹) was rapidly degraded aerobically while chloroform (1.2–1.0 mg L⁻¹) was recalcitrant under aerobic or anaerobic (denitrifying) conditions. Dynamic column experiments confirmed these findings. In column experiments, both chloroform and toluene were retarded relative to the pore water velocity, but to a far lesser extent than predicted by hydrophobic sorption theory. This discrepancy is attributed to the large particulate nature of the sorbent (sawdust) which prevented rapidly migrating organics from attaining an equilibrium partitioning with the bulk of this organic matter. Addition of acetate and nitrate at 20 mg L⁻¹ stimulated aerobic activity, but was inhibitory to toluene degradation. However, when nutrient addition ceased, enhanced toluene degradation was produced by the larger microbial population.In the field experiment, addition of acetate and nitrate to groundwater influent into the sawdust/sand pit may have stimulated benzene biodegradation, but had no apparent influence on volatile chlorinated hydrocarbon biodegradation. As in the column experiments, sorptive retardation was considerably less than predicted, due to a lack of equilibrium partitioning of organic solutes within the sawdust.Enhancing biodegradation in this remedial scheme was unsuccessful for a broad range of volatile organic compound types. Periodic nutrient addition to create variable environments for microbes appears to hold more promise for remediation than the continuous nutrient input scheme. This experience demonstrates the need for realistic field-scale experiments before translating laboratory studies into full-scale remedial operations.     

Enantioselective biodegradation of mecoprop in aerobic and anaerobic microcosms

Natural attenuation of mecoprop has been studied by determining changes in enantiomeric fraction in different redox environments down gradient from a landfill in the Lincolnshire limestone. Such changes could be due to differential metabolism of the enantiomers, or enantiomeric inversion. In order to confirm the processes occurring in the field, microcosm experiments were undertaken using limestone acclimatised in different redox zones. No biodegradation was observed in the methanogenic, sulphate-reducing or iron-reducing microcosms. In the nitrate-reducing microcosm (S)-mecoprop did not degrade but (R)-mecoprop degraded with zero order kinetics at 0.65 mg l(-1)day(-1) to produce a stoichiometric equivalent amount of 4-chloro-2-methylphenol. This metabolite only degraded when the (R)-mecoprop disappeared. In aerobic conditions (S)- and (R)-mecoprop degraded with zero order kinetics at rates of 1.90 and 1.32 mg l(-1)day(-1) respectively. The addition of nitrate to dormant iron-reducing microcosms devoid of nitrate stimulated anaerobic degradation of (R)-mecoprop after a lag period of about 20 days and was associated with the production of 4-chloro-2-methylphenol. Nitrate addition to sulphate-reducing/methanogenic microcosms did not stimulate mecoprop degradation. However, the added nitrate was completely utilised in oxidising sulphide to sulphate. There was no evidence for enantiomeric inversion. The study reveals new evidence for fast enantioselective degradation of (R)-mecoprop under nitrate-reducing conditions.