Spatio-temporal modeling of striped-bass egg, larval movement, and fate in the San Francisco Bay-Delta

Most models developed for the movement and fate of eggs and larvae of aquatic species are based on a particle tracking approach. Although this method has many advantages due to its high flexibility, particle tracking may become computationally intensive for complex geometries and when large numbers of particles are needed to simulate the population properly. In continuous models based on advection and dispersion mechanisms, the computational burden is independent of the size of the population. We developed a continuous fate and transport model for striped bass eggs and larvae in the San Francisco Bay-Delta. The model predicts the concentration of eggs and larvae at any location over time. The method of moments was used to account for the effect of temperature and age on the transition of eggs to larvae and larvae to juveniles. Egg and larval mortality were represented as functions of temperature, and eggs also experienced settling mortality. The fate and transport model used the same one-dimensional spatial grid as the existing Delta Simulation Model II (DSM2) hydrodynamics model. DSM2 output of flow rates, water depths, and cross-sectional areas were inputted into the fate and transport model to determine transport. The model was applied to striped bass eggs and larvae data collected during years 1990-1994; agreement between the modeled and the measured data was acceptable in most cases. Exploratory simulations were performed to demonstrate how the model could be used to evaluate the effects on egg and larval survival and total juvenile production of water diversions for supply and agricultural use and changes in the long-term mean water temperature. The model can be further used to examine the impact of various operation strategies in the San Francisco Bay-Delta, where diversion losses of early life stages of fishes remain a major management issue.     

Tight sorption of arsenic,cadmium, mercury,and lead by edible activated carbon and acid-processed montmorillonite clay

Environmental Science and Pollution Research - Heavy metal exposure in humans and animals commonly occurs through the consumption of metal-contaminated drinking water and food. Although many...     

Underaddressed animal-welfare issues in conservation

Much progress has been made toward assessing and improving animal welfare in conservation. However, several glaring knowledge gaps remain where animal-welfare concerns exist but animal-welfare studies have not been performed in politically sensitive contexts. Based on contemporary issues in Australia, we identified 4 topics that require more research: animal-welfare oversight for operations designated as management (as opposed to research); animal-welfare impacts of biological agents used to control invasive animals; welfare of animals hunted recreationally; and animal-welfare impacts associated with indigenous wildlife use. Animal-welfare science may be applied to these sensitive topics through simple quantitative studies (e.g., quantifying the frequency of adverse animal-welfare events). Several such studies have effectively addressed animal-welfare concerns in similarly contentious contexts, including feral camel (Camelus dromedarius) culling in Australia, recreational hunting in Scandinavia, and indigenous whale hunting in the United States. For discussions of animal welfare in conservation to be evidence-based, courageous research is required in the 4 key areas we identified.     

Transient design of landfill liquid addition systems

This study presents the development of design charts that can be used to estimate lateral and vertical spacing of liquids addition devices (e.g., vertical well, horizontal trenches) and the operating duration needed for transient operating conditions (conditions until steady-state operating conditions are achieved). These design charts should be used in conjunction with steady-state design charts published earlier by Jain et al., 2010a, Jain et al., 2010b. The data suggest that the liquids addition system operating time can be significantly reduced by utilizing moderately closer spacing between liquids addition devices than the spacing needed for steady-state conditions. These design charts can be used by designers to readily estimate achievable flow rate and lateral and vertical extents of the zone of impact from liquid addition devices, and analyze the sensitivity of various input variables (e.g., hydraulic conductivity, anisotropy, well radius, screen length) to the design. The applicability of the design charts, which are developed based on simulations of a continuously operated system, was also evaluated for the design of a system that would be operated intermittently (e.g., systems only operated during facility operating hours). The design charts somewhat underestimates the flow rate achieved and overestimates the lateral extent of the zone of impact over an operating duration for an intermittently operated system. The associated estimation errors would be smaller than the margin of errors associated with measurement of other key design inputs such as waste properties (e.g., hydraulic conductivity) and wider variation of these properties at a given site due to heterogeneous nature of waste.     

Variation in sperm morphometry and sperm competition among barn swallow (Hirundo rustica) populations

Spermatozoa vary greatly in size and shape among species across the animal kingdom. Postcopulatory sexual selection is thought to be the major evolutionary force driving this diversity. In contrast, less is known about how sperm size varies among populations of the same species. Here, we investigate geographic variation in sperm size in barn swallows Hirundo rustica, a socially monogamous passerine with a wide Holarctic breeding distribution. We included samples from seven populations and three subspecies: five populations of ssp. rustica in Europe (Czech, Italy, Norway, Spain, and Ukraine), one population of ssp. transitiva in Israel, and one population of ssp. erythrogaster in Canada. All sperm traits (head length, midpiece length, tail length, and total length) varied significantly among populations. The variation among the European rustica populations was much lower than the differences among subspecies, indicating that sperm traits reflect phylogenetic distance. We also performed a test of the relationship between the coefficient of between-male variation in total sperm length and extrapair paternity levels across different populations within a species. Recent studies have found a strong negative relationship between sperm size variation and extrapair paternity among species. Here, we show a similar negative relationship among six barn swallow populations, which suggests that the variance in male sperm length in a population is shaped by the strength of stabilizing postcopulatory sexual selection.     

Integration of distance, direction and habitat into a predictive migratory movement model for blue-winged teal (Anas discors)

Historically, the migration of birds has been poorly understood in comparison to other life stages during the annual cycle. The goal of our research is to present a novel approach to predict the migratory movement of birds. Using a blue-winged teal case study, our process incorporates not only constraints on habitat (temperature, precipitation, elevation, and depth to water table), but also approximates the likely bearing and distance traveled from a starting location. The method allows for movement predictions to be made from unsampled areas across large spatial scales. We used USGS’ Bird Banding Laboratory database as the source of banding and recovery locations. We used recovery locations from banding sites with multiple within-30-day recoveries were used to build core maximum entropy models. Because the core models encompass information regarding likely habitat, distance, and bearing, we used core models to project (or forecast) probability of movement from starting locations that lacked sufficient data for independent predictions. The final model for an unsampled area was based on an inverse-distance weighted averaged prediction from the three nearest core models. To illustrate this approach, three unsampled locations were selected to probabilistically predict where migratory blue-wing teals would stopover. These locations, despite having little or none data, are assumed to have populations. For the blue-winged teal case study, 104 suitable locations were identified to generate core models. These locations ranged from 20 to 228 within-30-day recoveries, and all core models had AUC scores greater than 0.80. We can infer based on model performance assessment, that our novel approach to predicting migratory movement is well-grounded and provides a reasonable approximation of migratory movement.     

Quantifying the importance of local niche-based and stochastic processes to tropical tree community assembly

Although niche-based and stochastic processes, including dispersal limitation and demographic stochasticity, can each contribute to community assembly, it is difficult to quantify the relative importance of each process in natural vegetation. Here, we extend Shipley's maxent model (Community Assembly by Trait Selection, CATS) for the prediction of relative abundances to incorporate both trait-based filtering and dispersal limitation from the larger landscape and develop a statistical decomposition of the proportions of the total information content of relative abundances in local communities that are attributable to trait-based filtering, dispersal limitation, and demographic stochasticity. We apply the method to tree communities in a mature, species-rich, tropical forest in French Guiana at 1-, 0.25- and 0.04-ha scales. Trait data consisted of species' means of 17 functional traits measured over both the entire meta-community and separately in each of nine 1-ha plots. Trait means calculated separately for each site always gave better predictions. There was clear evidence of trait-based filtering at all spatial scales. Trait-based filtering was the most important process at the 1-ha scale (34%), whereas demographic stochasticity was the most important at smaller scales (37-53%). Dispersal limitation from the meta-community was less important and approximately constant across scales (-9%), and there was also an unresolved association between site-specific traits and meta-community relative abundances. Our method allows one to quantify the relative importance of local niche-based and meta-community processes and demographic stochasticity during community assembly across spatial and temporal scales.     

Biophysical feedback mediates effects of invasive grasses on coastal dune shape

Vegetation at the aquatic-terrestrial interface can alter landscape features through its growth and interactions with sediment and fluids. Even similar species may impart different effects due to variation in their interactions and feedbacks with the environment. Consequently, replacement of one engineering species by another can cause significant change in the physical environment. Here we investigate the species-specific ecological mechanisms influencing the geomorphology of U.S. Pacific Northwest coastal dunes. Over the last century, this system changed from open, shifting sand dunes with sparse vegetation (including native beach grass, Elymus mollis), to densely vegetated continuous foredune ridges resulting from the introduction and subsequent invasions of two nonnative grass species (Ammophila arenaria and Ammophila breviligulata), each of which is associated with different dune shapes and sediment supply rates along the coast. Here we propose a biophysical feedback responsible for differences in dune shape, and we investigate two, non-mutually exclusive ecological mechanisms for these differences: (1) species differ in their ability to capture sand and (2) species differ in their growth habit in response to sand deposition. To investigate sand capture, we used a moveable bed wind tunnel experiment and found that increasing tiller density increased sand capture efficiency and that, under different experimental densities, the native grass had higher sand capture efficiency compared to the Ammophila congeners. However, the greater densities of nonnative grasses under field conditions suggest that they have greater potential to capture more sand overall. We used a mesocosm experiment to look at plant growth responses to sand deposition and found that, in response to increasing sand supply rates, A. arenaria produced higher-density vertical tillers (characteristic of higher sand capture efficiency), while A. breviligulata and E. mollis responded with lower-density lateral tiller growth (characteristic of lower sand capture efficiency). Combined, these experiments provide evidence for a species-specific effect on coastal dune shape. Understanding how dominant ecosystem engineers, especially nonnative ones, differ in their interactions with abiotic factors is necessary to better parameterize coastal vulnerability models and inform management practices related to both coastal protection ecosystem services and ecosystem restoration.