Population structure and genetic diversity in green turtles nesting at Tortuguero,Costa Rica,based on mitochondrial DNA control region sequences

The green turtle (Chelonia mydas) nesting population at Tortuguero, Costa Rica, is the largest nesting aggregation in the Atlantic, by at least an order of magnitude. Previous mitochondrial DNA (mtDNA) surveys based on limited sampling (n = 41) indicated low genetic diversity and low gene flow with other Caribbean nesting colonies. Furthermore, a survey of nuclear DNA diversity invoked the possibility of substructure within the Tortuguero rookery. To evaluate these characteristics, mtDNA control region sequences were determined for green turtles nesting at Tortuguero in 2001 (n = 157) and 2002 (n = 235). The increased sample revealed three additional haplotypes; five haplotypes are now known for Tortuguero female green turtles. Analyses of molecular variance indicated that there was no significant spatial population structure along the 30-km nesting beach. In addition, no temporal population structure was detected either between the two nesting seasons or within the nesting season. As a result of the larger sample size and additional haplotypes, estimates of genetic separation among Caribbean nesting colonies have changed and the concordance of phylogenetic and phylogeographic patterns reported in the past for green turtles in the Greater Caribbean has weakened. The five haplotypes from Tortuguero represent 36% of the haplotypes identified in green turtle nesting aggregations in the Greater Caribbean and 17% of the haplotypes known to occur in nesting or foraging aggregations in the Greater Caribbean. Haplotype diversity (0.16) and nucleotide diversity (0.0034) for the Tortuguero population are substantially lower than those for the combined rookeries in the Greater Caribbean (0.44 and 0.0078, respectively). Although comprehensive evaluation of regional genetic diversity requires nuclear DNA data, our study indicates that conserving genetic diversity in Caribbean green turtles will require careful management of the smaller rookeries in addition to the Tortuguero rookery.     

A morphological approach for relating decapod crustacean cephalothorax shape with distribution in the water column

Cephalothorax profiles for individuals of 18 decapod crustacean species were obtained from pictures of specimens captured using various experimental bottom trawls in the Mediterranean basin, at depths ranging from 200 to 4000 m in 2000 and 2002. Profiles were compared using the shape (outline) of the entire cephalothorax (including and excluding the rostrum). Principal component analysis (PCA) of the profiles, rostrum included, yielded two large species groupings related to rostrum size, species having a long rostrum being clustered on the positive portion of the first axis and species having a short rostrum being clustered on the negative portion of this same axis (the F1 axis explained 72.17% of the total variance). The PCA separated pelagic and endobenthic animals (with short rostrums) from nektobenthic animals (with long rostrums). Only the two deepest-dwelling species (dwelling at depths below 2000 m) were distanced from their respective groups. The pelagic shrimp Acanthephyra pelagica was clearly grouped with the nektobenthic species despite being reported to have a pelagic habitat. The nektobenthic deep-sea species Nematocarcinus exilis has a relatively medium-size rostrum and was placed among the pelagic–endobenthic species. The endobenthic and pelagic groups remained stable even when rostral morphometrics were excluded from the PCA analysis. The hypothesis that predation and diet are the fundamental determining factors for all habitats throughout most of the lifetimes of individuals and hence that species will evolve specialised phenotypes to adapt to local environmental conditions is considered in the discussion.Communicated by O. Kinne, Oldendorf/Luhe     

Changes in morphology and physiology of an East Mediterranean sponge in different habitats

The sponge Tetilla sp. (Tetractinomorpha: Tetillidae) is a common species in the eastern Mediterranean. This sponge inhabits four different habitat types differing in wave impact and irradiance levels. Two of these habitats (a shallow cave and deep water) are characterized by relatively calm water, whereas the other two (shallow exposed site and tide pools) are in turbulent water with high energy flow. The present study examined the influence of physical (depth, illumination and water motion) and biotic factors on morphology, skeletal plasticity and reproductive traits among the four spatially separated populations. Sponges from tidal pools had significantly larger body volume than sponges from deep water and from shallow caves (ANOVA: tidal-deep P<0.0001; tidal-shallow caves P<0.05). Sponges from exposed habitats were significantly larger than deep-water sponges (ANOVA: P=0.01). In addition, individuals from tide pools and from the exposed habitat had a significantly higher proportion of structural silica than sponges from the calmer deep water and from the cave sites. Oxea spicules in sponges from the calm habitats were significantly shorter than in those from the tidal pools and the exposed habitats. The percentage of spicules out of a sponges dry weight in individuals transplanted from deep (calm) to shallow (turbulent) water significantly increased by 21.9±12.9%. The new spicule percentage did not differ significantly from that of sponges originally from shallow water. Oocyte diameter differed significantly between habitats. The maximal size of mature eggs was found in deep-water sponges in June (97±5 m). In the shallow habitats, a smaller maximal oocyte diameter was found in the cave, in May (56.5±3 m). Furthermore, oocyte density in shallow-water sponges was highest in May and decreased in June (with 88.2±9 and 19.3±9 oocytes mm^–2, respectively). At the same time (June), oocyte density of deep-water sponges had just reached its maximum (155±33.7 oocytes mm^–2). The difference in oocyte size and density between deep- and shallow-water individuals indicates an earlier gamete release in the shallow sponge population. The results suggest that plasticity in skeletal design of this sponge indicates a trade off between spicule production and investment in reproduction.Communicated by O. Kinne, Oldendorf/Luhe     

Nematocyst complements of nudibranchs in the genus <Emphasis Type="Italic">Flabellina</Emphasis> in the Gulf of Maine and the effect of diet manipulations on the cnidom of <Emphasis Type="Italic">Flabellina verrucosa</Emphasis>

Aeolid nudibranchs maintain functional nematocysts, which are sequestered from the nudibranchs’ cnidarian prey and provide protection against predators. Some species exhibit extensive variation in incorporated nematocysts, while others maintain a limited number of types. This study examines the apparent diversity in uptake and patterns of nematocyst incorporation among related species. Nematocyst complements were described for four Gulf of Maine nudibranch species in the genus Flabellina exhibiting a variety of feeding strategies and prey specificities. Diet manipulations were performed to examine the response to changing nematocyst availability using a generalist consumer, Flabellina verrucosa, to assess nematocyst uptake based on diet. The flabellinid species examined exhibited significant differences in nematocyst incorporation, reflecting differences in their specificity as predators and nematocyst types available in their natural prey. The nematocyst complement of F. verrucosa was the most variable and differed among collection regions. When diet was manipulated, nematocyst uptake depended on the prey the nudibranchs consumed, but when offered a variety of prey, F. verrucosa selectively preferred nematocysts from scyphistomae. The observed variation in nematocyst uptake among species and regions probably relates to environmental disparities among populations.     

Estimating the complexity of bird song by using capture-recapture approaches from community ecology

Repertoire size, the number of unique song or syllable types in the repertoire, is a widely used measure of song complexity in birds, but it is difficult to calculate this exactly in species with large repertoires. A new method of repertoire size estimation applies species richness estimation procedures from community ecology, but such capture-recapture approaches have not been much tested. Here, we establish standardized sampling schemes and estimation procedures using capture-recapture models for syllable repertoires from 18 bird species, and suggest how these may be used to tackle problems of repertoire estimation. Different models, with different assumptions regarding the heterogeneity of the use of syllable types, performed best for different species with different song organizations. For most species, models assuming heterogeneous probability of occurrence of syllables (so-called detection probability) were selected due to the presence of both rare and frequent syllables. Capture-recapture estimates of syllable repertoire size from our small sample did not differ significantly from previous estimates using larger samples of count data. However, the enumeration of syllables in 15 songs yielded significantly lower estimates than previous reports. Hence, heterogeneity in detection probability of syllables should be addressed when estimating repertoire size. This is neglected using simple enumeration procedures, but is taken into account when repertoire size is estimated by appropriate capture-recapture models adjusted for species-specific song organization characteristics. We suggest that such approaches, in combination with standardized sampling, should be applied in species with potentially large repertoire size. On the other hand, in species with small repertoire size and homogenous syllable usage, enumerations may be satisfactory. Although researchers often use repertoire size as a measure of song complexity, listeners to songs are unlikely to count entire repertoires and they may rely on other cues, such as syllable detection probability.Communicated by A. Cockburn     

Quantifying effects of pollution on biodiversity: a case study of highly diverse molluscan assemblages in the Mediterranean

Structured sampling designs are important in the assessment of environmental impacts of variable ecological systems. Recent developments have provided a useful framework extending existing univariate techniques into a multivariate context. Measures of taxonomic relatedness have also been introduced, which complement existing measures of diversity of assemblages. In this study, the potential effects of sewage discharge on spatial patterns of highly diverse molluscan assemblages in a Mediterranean rocky subtidal habitat were investigated. Nine 20 cm×20 cm quadrats were taken from each of three sites (80 m–100 m apart) within a putatively impacted location near a sewage outfall (I) and at each of two control locations (Cs) by destructive sampling by SCUBA divers at a depth of 3 m–4 m. A total of 5507 specimens of 151 species were collected. The average and the variance in total abundance of molluscs were greater, on average, at I than at Cs. Higher abundances at the sewage outfall were largely driven by greater numbers of juvenile molluscs. The Shannon diversity of molluscs (H′) was significantly lower at I, but no difference among locations was detected for the total number of species (S). In addition, the taxonomic distinctness (Δ*) of molluscs was greater at Cs, although it was more variable at I. Multivariate analyses showed that there was a significant difference in the structure of assemblages at I compared with Cs. The location near the outfall was characterized by greater abundances of several species, including especially the gastropods Pusillina philippi, Bittium latreilli, and Bittium reticulatum. There was also greater variability in the structure of assemblages among sites and among quadrats at control locations compared to those near the outfall. Using a suite of univariate and multivariate measures, including diversity indices, detailed information on taxonomic structure and analyses of variability at different spatial scales, provided useful insights into the effects of sewage impacts on these diverse assemblages. These results also highlighted the importance of analysing measures of variance, as well as mean in considering effects of stress in natural communities.     

Quantitative analysis of aggregation behavior in juvenile blacktip sharks

Aggregation patterns of a population of juvenile blacktip sharks (Carcharhinus limbatus) within a summer nursery area were examined over a period of 3 years using an array of acoustic monitors. Individually coded acoustic tags were surgically implanted into 33–40 neonate sharks each year from 2000 to 2002 and their presence monitored continuously by the acoustic array. Data from the acoustic monitors was processed to estimate the center of activity location of each tagged shark every 30 min. Nearest neighbor analysis of shark locations revealed that sharks aggregated within the nursery in all years of the study. Sharks were aggregated most commonly during the early and late summer months (June, October and November) and became less common through the middle of the study period each year (July–September). Temporal periodicity within the data revealed a strong diel pattern with sharks aggregating during the day and dispersing at night, except in June when aggregations often persisted through the night. Aggregations were generally restricted to the mid and northern sections of the study site. Reasons for aggregations may include predator avoidance or improved feeding efficiency.     

Arsenic in groundwaters of the Lower Mekong

Increasing incidence and awareness of arsenic in many alluvial aquifers of South-east Asia has raised concern over possible arsenic in the Lower Mekong Basin. Here, we have undertaken new research and reviewed many previous small-scale studies to provide a comprehensive overview of the status of arsenic in aquifers of Cambodia and the Cuu Long Delta of Vietnam. In general natural arsenic originates from the Upper Mekong basin, rather than from the local geology, and is widespread in soils at typical concentrations of between 8 and 16 ppm; (dry weight). Industrial and agricultural arsenic is localised and relatively unimportant compared to the natural alluvial arsenic. Aquifers most typically contain groundwaters of no more than 10 μg L⁻¹, although scattered anomalous areas of 10 to 30 μg L⁻¹ are also quite common. The most serious, but possibly ephemeral arsenic anomalies, of up to 600 μg L⁻¹, are associated with iron and organic-rich flood-plain sediments subject to very large flood-related fluctuations in water level, resulting in transient arsenopyrite dissolution under oxidizing conditions. In general, however, high-arsenic groundwaters result from the competing interaction between sorption and dissolution processes, in which arsenic is only released under reducing and slightly alkaline conditions. High arsenic groundwaters are found both in shallow water-tables, and in deeper aquifers of between 100 and 120 m depth. There is no evidence of widespread arsenicosis, but there are serious localised health-hazards, and some risk of low-level arsenic ingestion through indirect pathways, such as through contaminated rice and aquaculture. An almost ubiquitous presence of arsenic in soils, together with the likelihood of greatly increased groundwater extraction in the future, will require continuing caution in water resources development throughout the region.     

Migratory and reproductive movements of male leatherback turtles (<Emphasis Type="Italic">Dermochelys coriacea</Emphasis>)

The biology of the endangered leatherback turtle (Dermochelys coriacea) at sea is poorly understood. As research has been almost exclusively limited to studies of nesting females, the movements of male turtles and the timing and location of mating activity have remained unknown. We report on the first deployments of satellite tags on male leatherbacks. Male migration to and residency in waters adjacent low-latitude nesting beaches in the western Atlantic suggest that this is where mating occurs, and return migration to these areas reveals male fidelity for breeding sites. Rate of travel decreased markedly after arriving in coastal breeding areas, where males remained for up to 96 days before assuming northward migrations. The initiation of these northward migrations coincided with peak nesting activity in adjacent nesting colonies. Data from satellite-linked time-depth recorders attached to two males revealed diel dive patterns in breeding areas and marked differences in diving behaviour between migratory and breeding periods in one turtle. When male turtles were in waters adjacent nesting colonies, their movements differed from those reported for nesting females, with females ranging farther from shore. Our results suggest that male leatherbacks may be vulnerable to entanglement in coastal fishing gear in waters adjacent nesting beaches.Communicated by R.J. Thompson, St. Johns