Secretor Status is Associated with Susceptibility to Disease in a Large GII.6 Norovirus Foodborne Outbreak

Food and Environmental Virology - Norovirus is commonly associated with food and waterborne outbreaks. Genetic susceptibility to norovirus is largely dependent on presence of histo-blood group...     

Influences of urban wastewaters on the stream water quality: a case study from Gumushane Province, Turkey

Urban wastewater in Turkey is primarily discharged without treatment to marine environments, streams and rivers, and natural and artificial lakes. Since it has been well established that untreated effluent in multi-use waters can have acute and chronic impacts to both the environment and human health, it is important to evaluate the consequences of organic enrichment relative to the structure and function of aquatic environment. We investigated the impacts of untreated municipal wastewater discharge from the city of Gumushane in the Eastern Black Sea Region of Turkey on the surface water quality of the stream Harsit. Several key water-quality indicators were measured: chemical oxygen demand (COD), ammonium nitrogen (NH ₄ ⁺ –N), nitrite nitrogen (NO ₂ ^? –N), nitrate nitrogen (NO ₃ ^? –N), total Kjeldahl nitrogen (TKN), total nitrogen (TN), orthophosphate phosphorus (PO ₄ ^3? –P), methylene blue active substances (MBAS), water temperature (t), pH, dissolved oxygen (DO), and electrical conductivity (EC). The monitoring and sampling studies were conducted every 15 days from March 2009 to February 2010 at three longitudinally distributed stations. While t, pH, DO, and EC demonstrated relatively little variability over the course of the study, other parameters showed substantial temporal and spatial variations. The most dramatic differences were noted in COD, NH ₄ ⁺ –N, NO ₂ ^? –N, TKN, TN, PO ₄ ^3— P, and MBAS immediately downstream of the wastewater discharge. Concentration increases of 309 and 418 % for COD, 5,635 and 2,162 % for NH ₄ ⁺ –N, 2,225 and 674 % for NO ₂ ^? –N, 283 and 478 % for TKN, 208 and 213 % for PO ₄ ^3? –P, and 535 and 1,260 % for MBAS were observed in the summer and autumn, respectively. These changes were associated with greatly diminished seasonal stream flows. Based on NO ₂ ^? –N, TKN, PO ₄ ^3— P, and MBAS concentrations, it was concluded that Harsit stream water was correctly classified as polluted. The most telling parameter, however, was NH ₄ ⁺ –N, which indicated highly polluted waters in both the summer and autumn. The elevated concentrations of both P and N in the downstream segment of the stream triggered aggressive growth of submerged algae. This eutrophication of river systems is highly representative of many urban corridors and is symptomatic of ongoing organic enrichment that must be addressed through improved water treatment facilities.     

Heavy metals intake by cultured mushrooms growing in model system

Micro element and heavy metal contents of mushrooms were determined by Inductively Coupled Plasma Atomic Emission Spectrometry (ICP-AES). It was seen an increase in the heavy metal contents (except Cu and Zn) of the mushrooms until the second dose. A decrease was seen in heavy metal intake of the mushroom in the application of the third dose. The highest accumulation occurred from the upper soils treated with the second dose. Amounts of Cd, Cr, Cu, Pb and Zn, which were accumulated in the mushroom after the application of this dose, were detected as 5.7, 23.1, 75.7, 62.8 and 99.3 ppm, respectively.     

Macro- and microelement contents of some legume seeds

Macro- and microelement contents of legume seeds were determined by ICP-AES. The potassium K contents of seeds ranged between 7,426 mg/kg (Lupinus albus L.) and 16,558 mg/kg (Phaseolus vulgaris L. ssp. sphaericus Mart). In addition, while P contents of seeds changed from 2,719 mg/kg (L. albus L.) to 5,792 mg/kg (Vigna sinensis (L.) Savi), Ca contents ranged at the levels between 1,309 mg/kg (Cicer arietinum L.) and 2,781 mg/kg (L. albus L.). The microelement contents of samples were found to be different depending on several species. The iron levels of samples were determined at the levels between 90.51 mg/kg (Phaseolus mungo L.) and 152.80 mg/kg (P. vulgaris L. ssp. sphaericus Mart). In addition, Zn contents of seeds were found between 31.32 mg/kg (C. arietinum L.) and 44.75 mg/kg (V. sinensis (L.) Savi).     

Characterization and pollution potential assessment of Tunceli, Turkey municipal solid waste open dumping site leachates

Environmental monitoring of leachate quality from an open municipal solid waste dumping site in Tunceli, Turkey was studied in this research. The most commonly examined pollution parameters were determined on a seasonal basis. The annual average 5-day biological oxygen demand (BOD₅) and chemical oxygen demand (COD) values of station points were measured as 70 and 425 mg/L, respectively, and also the average BOD₅/COD ratio (a measure of biodegradability) was calculated as 0.20. The low ratio of biodegradability and slightly alkaline pH values in the leachate samples indicated that the site was characterized by methanogenic conditions. The mean ammonium-nitrogen (NH₄ ⁺-N) and corresponding phosphate (orthophosphate) values were assayed as 70 and 11 mg/L, respectively. The average solids content in the leachates was measured as 4,681 mg/L (total solids) and 144 mg/L (suspended solids). Very low concentrations of iron, manganese, copper, and zinc in the leachate samples were found and the concentration of cadmium was measured below detection limits. Excessive amount of nutrients and high organic and inorganic pollutant content in the leachates pose serious pollution potential to the environment. Since no drainage system or bio treatment exists in this open dumping site, high permeability of natural soil at the site and in the surrounding area and very fractured and crackled rocks under natural soil are indicators of high groundwater pollution potential in this site.     

Sulphur-oxidising bacteria isolated from deep caves improve the removal of arsenic from contaminated harbour sediments

Acidophilic S-oxidising bacteria isolated from sulphur-rich deep caves (Frasassi, Italy), characterised by relatively low temperature, were tested for their ability to mobilise (semi-)metals from contaminated sediments. Sediment samples from two commercial Italian seaports were used to set up bioleaching experiments. The effect of different growth substrates was also investigated. Our experiments revealed that S-oxidising bacteria isolated from Frasassi caves have a high potential to remove As from contaminated marine sediments, as never reported before. Although As solubilisation efficiency was quite low (i.e. about 30%), only a small amount of As was associated with non-residual fractions of the sediment. On the contrary, the solubilisation efficiencies of Zn and Ni (20% and 10%, respectively) were lower than those previously obtained by the use of other acidophilic bacteria and mainly influenced by the experimental conditions rather than by the presence of the S-oxidising bacteria. Results presented here open new perspectives in bioleaching applications for the remediation of contaminated sediments. Indeed, microbial strains adapted to relatively low-temperature environments could improve sediment bioleaching at temperature regimes where mesophilic and thermophilic strains are not favoured. Such strains could be exploited for developing selective bioremediation procedures for sediments contaminated with As, to be applied in multistep biotreatment processes.     

Assessment of the Water Quality of Troia for the Multipurpose Usages

The aim of this study was to determine the origin and quality of waters in Troia. For this purpose total of 25 water samples including 2 springs, 14 surfaces and 9 groundwaters, were collected at eight different times. Global positioning system (GPS) was used to determine to coordinates of sampling points. The concentration of 6 minor elements (B, Cu, F, Fe, Pb and Zn), 9 major anions and cations (Na(+), Ca(2+), K(+), Mg(2+), SO(4)(2-), PO(4)(3-), HCO(3)(-), Cl(-) and, CO(3)(2-)) were determined by spectrometric, colorimetric and volumetric methods. Water pH, EC, DO, ORP and TDS were measured in situ using probes. The data showed that the concentrations of most of minor elements were below the EPA and TSE limits except Pb which ranged between 0.001 and 4.832 mg L(-1). Statistically significant relationships (P<0.01 and r>0.70) were observed between Fe and Cu, Cu and K(+), Cu and Ca(2+), B and Na(+), Na(+) and K(+). Assessing the water based on irrigation using Wilcox model showed that some well waters were not suitable for irrigation. Troia water was found to be highly corrosive and the average corrosion coefficients varied from 0.5 to 4.6. According to the Piper and Schoeller diagrams results, the water in Troia was classified as mixed water type.     

Quality of Shallow Groundwater and Drainage Water in Irrigated Agricultural Lands in A Mediterranean Coastal Region of Turkey

Spatial and seasonal differences in water quality of drainage water and unconfined shallow groundwater were related to irrigation in Samandağ, a Mediterranean coastal region. Eighteen wells, seven drainage points and Orontes River were monitored bimonthly for one year for analyses of electrical conductivity (EC), total dissolved solids (TDS), sodium adsorption ratio (SAR), cations (Na, K, Ca + Mg) and anions (CO₃, HCO₃, Cl and SO₄). Agricultural irrigation using saline groundwater decreased water quality of Orontes River during the irrigation season (May to September) more than during the non-irrigation season (October to April). Seasonal fluctuations in water quality of shallow groundwater were greater during the irrigation season than the non-irrigation season in the study area. Excessive use of groundwater resulted in a decline in the water table levels in the irrigation season. Water table level rose up to the soil surface in areas where there was a lack of drainage or poor drainage, due to the impact of precipitation in the winter. SAR and pH values of drainage water increased in the irrigation season, while the other properties of drainage water decreased. Irrigation water quality of Orontes River was classified as C₃S₁ in both seasons. Irrigation water quality of shallow groundwater and drainage water varied from C₂S₁ to C₄S₂ in one year. Drainage and well waters were found to be different on yearly basis in terms of Na, SAR (p<0.01) and Ca + Mg concentrations (p<0.001). Ca + Mg concentrations for both sources were different for all sampling dates (p<0.001).     

An examination of the effects of land use changes on nature conservation rulings in Çeşme peninsula, Turkey

Because of their intense vegetation and the fact that they include areas of coastline, deltas situated in the vicinity of big cities are areas of great attraction for people who wish to get away from in a crowded city. However, coasts, with their fertile soil and unique flora and fauna, need to be protected. In order for the use of such areas to be planned in a sustainable way by local authorities, there is a need for detailed data about these regions. In this study, the changes in land use of the area between Topburnu and Uçburun Musa Bey Harbour on the Çe?me peninsula, which is to the immediate west of Turkey’s third largest city ?zmir, from 1976 up to the present day, were investigated. In the study, using aerial photographs taken in 1976, 1995 and 2000 and an IKONOS satellite image from the year 2007, the natural and cultural characteristics of the region and changes in the coastline were determined spatially. Using aerial photographs from 1976, 1995 and 2000 and an IKONOS satellite image from the year 2007, together with “1/25,000 scale Conservation-Oriented Development Plans” prepared in 1979, 1990 and 2000 by the committee for the Preservation of Natural and Cultural Entities attached to the Ministry of Culture and Tourism of the Turkish Republic, the natural and cultural characteristics of the region and the land use changes and their connection with conservation rulings were determined spatially. In this study, spatial changes in land use over the years were compared with changing conservation rulings over the years and the emerging results have brought a new perspective to the subject in contrast to other similar studies.     

Effect and Control of Pollution in Catchment Area of Lake Sapanca, Turkey

/ Land-based point and diffuse pollution sources in the catchment area of Lake Sapanca, Turkey, were investigated. The present and future distribution of pollution loads were evaluated in terms of nitrogen, phosphorus, biochemical oxygen demand, and pesticides. A methodology for the estimation of pollution loads was presented; most of which were based on "unit loads." Presently domestic and industrial point sources dominate over diffuse sources including fertilizers and pesticides from agricultural use, nutrient loads from forests and meadows, urban runoff, and leachates from unregulated dumps of solid wastes. For the future, the aim of the control action is to maintain the sustainability of the water quality of the lake, at least at the second class of European Community standards. Within this framework; urgent/short-term and medium/long-term control actions will be exercised. In the urgent/short-term stage, simpler and natural ways of treatment will be employed. In the medium/long-term stage an integrated collection and treatment system will be put on operation. After completion of a proposed collection system and treatment plants to handle point sources, the control of diffuse sources will be more significant. Control of diffuse sources for the abatement of further deterioration of water quality then becomes the key issue to be emphasized in the Lake Sapanca catchment area. Diffuse sources control will be achieved by dividing the catchment area into three major protection zones. Use of pesticides and fertilizers on agricultural land and all other activities within these protection zones will be accomplished according to control plans, which will be supervised by an institution established to be responsible of all the activities within the basin.KEY WORDS: Diffuse sources; Land-based pollution; Nutrients; Pesticides; Point sources; Protection zones