Identification of two mutations for ataxia telangiectasia among the Druze community

Ataxia telangiectasia (AT) is a rare autosomal recessive disease characterized by progressive cerebellar ataxia, immunodeficiency, susceptibility to lymphoreticular malignancies and cancer predisposition, hypersensitivity to ionic radiation and chromosomal instability. In this study, we report a founder effect of AT with two different mutations: 1339 C > T and 6672 del GG together with 6677 del TACG, found in four Israeli Druze clans originating from three different Druze centers in the Middle East (Lebanon, Syria and Jordan). The 1339 C > T mutation, which results in a stop codon at position 447 of the ATM protein, was observed in two unrelated clans originating from Lebanon and Jordan. The 6672 del GG/6677 del TACG mutation was observed in two unrelated clans originating from Syria and Lebanon. In the present study, simple and fast detection assays were developed for both mutations. The ability to identify AT carriers routinely provides a unique opportunity for prenatal diagnosis, genetic counseling as well as marriage guidance in the Druze community. Copyright © 2004 John Wiley & Sons, Ltd.     

Refining Nitrogen and Phosphorus Fertilization Strategies for Controlling the Toxigenic Alga Prymnesium parvum1

Kurten, Gerald L., Aaron Barkoh, Drew C. Begley, and Loraine T. Fries, 2010. Refining Nitrogen and Phosphorus Fertilization Strategies for Controlling the Toxigenic Alga Prymnesium parvum. Journal of the American Water Resources Association (JAWRA) 46(1):170-186. DOI: 10.1111/j.1752-1688.2009.00401.x Abstract: Previous studies have shown that three times weekly applications of phosphorus (30 μg P/l) and nitrogen (300 μg N/l) were effective at reducing the density and toxicity of the alga Prymnesium parvum in limnocorrals simulating a 40-day moronid (e.g., striped bass, Morone saxatilis, and palmetto bass, M. saxatilis ×Morone chrysops) fingerling culture period. However, this fertilization regime produced high pH and unionized ammonia-N concentrations that are detrimental to the survival of moronid fry and fingerlings. In two follow-up experiments we changed the source of N from ammonia to nitrate, reduced fertilization rates, and examined the effect of N-only or P-only fertilization. In the first experiment P fertilization rates were reduced by one-half to 15 μg P/l and NO₃-N was substituted for NH₃-N at the previously used rate of 300 μg N/l. In the second experiment, N fertilization rates were reduced to 150 μg N/l and the frequency of fertilization was determined by pH and P. parvum responses. Nitrate appeared to be as effective as ammonia as a source of N and when used in combination with P reduced P. parvum cell density and ichthyotoxicity. However, reduced N and P application rates and lower pond water temperatures during the study appeared to have decreased the speed at which fertilization produced these effects. While lower fertilization rates reduced algal productivity, high pH remained a concern for fish culture although pH was reduced to levels that might be acceptable with careful management of fish culture activities. Neither N-only nor P-only fertilization had a measurable effect on algal productivity or eliminated P. parvum and its toxicity. Furthermore, P-only fertilization may have increased P. parvum density and toxicity. For controlling P. parvum density and ichthyotoxicity we recommend a fertilization rate of 212 μg NO₃-N/l plus 30 μg PO₄-P/l applied three times weekly for aquaculture ponds where high pH is not a concern. Where high pH is a concern we recommend a fertilization rate of 117 μg NO₃-N/l plus 16 μg PO₄-P/l applied three times weekly with careful attention to afternoon pond pH.     

Climate policy in India: what shapes international, national and state policy?

At the international level, India is emerging as a key actor in climate negotiations, while at the national and sub-national levels, the climate policy landscape is becoming more active and more ambitious. It is essential to unravel this complex landscape if we are to understand why policy looks the way it does, and the extent to which India might contribute to a future international framework for tackling climate change as well as how international parties might cooperate with and support India's domestic efforts. Drawing on both primary and secondary data, this paper analyzes the material and ideational drivers that are most strongly influencing policy choices at different levels, from international negotiations down to individual states. We argue that at each level of decision making in India, climate policy is embedded in wider policy concerns. In the international realm, it is being woven into broader foreign policy strategy, while domestically, it is being shaped to serve national and sub-national development interests. While our analysis highlights some common drivers at all levels, it also finds that their influences over policy are not uniform across the different arenas, and in some cases, they work in different ways at different levels of policy. We also indicate what this may mean for the likely acceptability within India of various climate policies being pushed at the international level.     

别说大熊猫不濒危

2015年中国国家林业局公布数据显示中国大熊猫数量已经增加1864只,根据这一结果世界自然保护联盟将大熊猫由濒危物种降至易危物种。作者们指出这一结果未免过于乐观。（1）大熊猫的食物主要为竹子,CO₂浓度升高将影响竹子的生长发育,缩短竹子的生命周期,导致竹子提前开花,提前死亡;温度升高延长了竹粘虫等灾虫的生活周期,增加粘虫等害虫数量,影响竹子的产量和品质,从而威胁熊猫生存。（2）470 km长的龙门山地震带穿越四川亚种熊猫部分栖息地。遥感数据显示2008年汶川地震导致卧龙保护区进一步破碎化。（3）随着私家车的普及高速公路快速发展,生态旅游活动加剧,而人类活动影响动物荷尔蒙分泌、新陈代谢及生殖,增加疾病传播风险。（4）大熊猫栖息地环境污染日趋严重,直接威胁着大熊猫生存和健康。因此,大熊猫保护是一项长期的、艰巨的任务,世界自然保护联盟降级大熊猫保护等级为之过早,大熊猫依然是一个濒危物种,全球应该继续关注中国大熊猫保护。     

Habitat selection predicts genetic relatedness in an alpine ungulate

Landscape heterogeneity plays an integral role in shaping ecological and evolutionary processes. Despite links between the two disciplines, ecologists and population geneticists have taken different approaches to evaluating habitat selection, animal movement, and gene flow across the landscape. Ecologists commonly use statistical models such as resource selection functions (RSFs) to identify habitat features disproportionately selected by animals, whereas population genetic approaches model genetic differentiation according to the distribution of habitat variables. We combined ecological and genetic approaches by using RSFs to predict genetic relatedness across a heterogeneous landscape. We constructed sex- and season-specific resistance surfaces based on RSFs estimated using data from 102 GPS (global positioning system) radio-collared mountain goats (Oreamnos americanus) in southeast Alaska, USA. Based on mountain goat ecology, we hypothesized that summer and male surfaces would be the best predictors of relatedness. All individuals were genotyped at 22 microsatellite loci, which we used to estimate genetic relatedness. Summer resistance surfaces derived from RSFs were the best predictors of genetic relatedness, and winter models the poorest. Mountain goats generally selected for areas close to escape terrain and with a high heat load (a metric related to vegetative productivity and snow depth), while avoiding valleys. Male- and female-specific surfaces were similar, except for winter, for which male habitat selection better predicted genetic relatedness. The null models of isolation-by-distance and barrier only outperformed the winter models. This study merges high-resolution individual locations through GPS telemetry and genetic data, that can be used to validate and parameterize landscape genetics models, and further elucidates the relationship between landscape heterogeneity and genetic differentiation.     

Organic compounds and trace metals of anthropogenic origin in sediments from Montego Bay,Jamaica: assessment of sources and distribution pathways

Surface sediments throughout Montego Bay, Jamaica were collected in 1995 and analyzed for their trace metal and trace organic contaminant content. A variety of trace metals, petroleum hydrocarbons, polycyclic aromatic hydrocarbons, coprostanol as well as chlorinated hydrocarbons such as pesticides and polychlorinated biphenyls were detected and provide evidence for several anthropogenic inputs to the bay. Two main sources of these chemicals are the Montego River and the North Gully, the latter being more significant. Particle-associated pollutants were found to be distributed along the Montego River plume, as well as being transported by the prevailing water currents to the South-Western sections of the bay, probably through re-suspension of enriched fine sediments from the North Gully outfall area.     

EXPERIMENTAL VERIFICATION OF MULTICOMPONENT GROUND WATER CONTAMINATION PREDICTIONS1

ABSTRACT: Recent advances in mass transport modeling have made possible computation of the theoretical consequences of intricate multicomponent species interactions during ground water contamination events. Predictions such as strong chromatographic effects and induced downstream precipitations may have considerable impact on environmental analysis and regulation. Results of laboratory attempts to verify theoretical multicomponent transport predictions are discussed. Evidence presented here indicates that natural variability of soil properties make such verifications difficult. Although species interactions are easily confirmed, dramatic effects often exist only within small mathematical windows in strongly variable coefficient sets. Currently, the ability to generate multicomponent predictions apparently exceeds the ability to quantify the necessary, presumably deterministic, information required for real soils.     

Particulate matter pollution in the coal-producing regions of the Appalachian Mountains: Integrated ground-based measurements and satellite analysis

This study integrates the relationship between measured surface concentrations of particulate matter 10 μm or less in diameter (PM₁₀), satellite-derived aerosol optical depth (AOD), and meteorology in Roda, Virginia, during 2008. A multiple regression model was developed to predict the concentrations of particles 2.5 μm or less in diameter (PM_2.5) at an additional location in the Appalachia region, Bristol, TN. The model was developed by combining AOD retrievals from Moderate Resolution Imaging Spectro-radiometer (MODIS) sensor on board the EOS Terra and Aqua Satellites with the surface meteorological observations. The multiple regression model predicted PM_2.5 (r² = 0.62), and the two-variable (AOD-PM_2.5) model predicted PM_2.5 (r² = 0.4). The developed model was validated using particulate matter recordings and meteorology observations from another location in the Appalachia region, Hazard, Kentucky. The model was extrapolated to the Roda, VA, sampling site to predict PM_2.5 mass concentrations. We used 10 km x 10 km resolution MODIS 550 nm AOD to predict ground level PM_2.5. For the relevant period in 2008, in Roda, VA, the predicted PM_2.5 mass concentration is 9.11 ± 5.16 μg m^-3 (mean ± 1SD).

Implications: This is the first study that couples ground-based Particulate Matter measurements with satellite retrievals to predict surface air pollution at Roda, Virginia. Roda is representative of the Appalachian communities that are commonly located in narrow valleys, or “hollows,” where homes are placed directly along the roads in a region of active mountaintop mining operations. Our study suggests that proximity to heavy coal truck traffic subjects these communities to chronic exposure to coal dust and leads us to conclude that there is an urgent need for new regulations to address the primary sources of this particulate matter.