Climate change adaptation and mitigation in smallholder crop–livestock systems in sub-Saharan Africa: a call for integrated impact assessments

African mixed crop–livestock systems are vulnerable to climate change and need to adapt in order to improve productivity and sustain people’s livelihoods. These smallholder systems are characterized by high greenhouse gas emission rates, but could play a role in their mitigation. Although the impact of climate change is projected to be large, many uncertainties persist, in particular with respect to impacts on livestock and grazing components, whole-farm dynamics and heterogeneous farm populations. We summarize the current understanding on impacts and vulnerability and highlight key knowledge gaps for the separate system components and the mixed farming systems as a whole. Numerous adaptation and mitigation options exist for crop–livestock systems. We provide an overview by distinguishing risk management, diversification and sustainable intensification strategies, and by focusing on the contribution to the three pillars of climate-smart agriculture. Despite the potential solutions, smallholders face major constraints at various scales, including small farm sizes, the lack of response to the proposed measures and the multi-functionality of the livestock herd. Major institutional barriers include poor access to markets and relevant knowledge, land tenure insecurity and the common property status of most grazing resources. These limit the adoption potential and hence the potential impact on resilience and mitigation. In order to effectively inform decision-making, we therefore call for integrated, system-oriented impact assessments and a realistic consideration of the adoption constraints in smallholder systems. Building on agricultural system model development, integrated impact assessments and scenario analyses can inform the co-design and implementation of adaptation and mitigation strategies.F     

Determination of veterinary pharmaceuticals in poultry litter and soil by methanol extraction and liquid chromatography-tandem mass spectrometry

Pharmaceuticals are emerging contaminants with potential risks to the environment and human health. A liquid chromatography-tandem mass spectrometry (LC-MS-MS) method was developed for determination of the antimicrobials virginiamycin, monensin, salinomycin, narasin and nicarbazin in poultry litter and soil. This method involves methanol extraction and clean-up of extracts through glass microfibre filters, introduction of the extracts and separation of compounds on a Zorbax Eclipse XDB C8 column, and compound detection in a Quattro Micro Micromass spectrometer. For litter samples, Method Detection Limits ranged from 0.1–0.6 μg Kg^{? 1}, while Limits of Quantitation (LOQs) were 2, 1, 0.4, 1 and 2 μg Kg^{? 1} for virginiamycin, monensin, salinomycin, narasin and nicarbazin, respectively. For soil samples calculated LOQs were 2, 3, 1, 1, and 1 μg Kg^{? 1} for virginiamycin, monensin, salinomycin, narasin and nicarbazin, respectively. Application of the LC-MS-MS method for detection of veterinary pharmaceuticals in litter collected from commercial poultry farms showed that compounds were present at concentrations ranging from 10–11,000 μg Kg^{? 1}.     

Microbial community responses to bioremediation treatments for the mitigation of low-dose anthracene in marine coastal sediments of Bizerte lagoon (Tunisia)

Purpose

The main goals of this study were to investigate (1) the behavior of microbial communities in response to low-dose bioavailable anthracene addition in lightly contaminated sediment from Bizerte Lagoon and (2) the effects of bioremediation treatments on microbial biomass, activity, and community structure.

Methods

Sediment microcosms amended with 1 ppm anthracene were incubated in triplicate during 30 days. Biostimulation (addition of nitrogen and phosphorus fertilizer) and bioaugmentation (inoculation of a hydrocarbonoclastic bacterium) were used as bioremediation treatments. Bacterial biomass was estimated using flow cytometry. Sediment oxygen consumption was measured with oxygen microelectrodes. Bacterial community structure was assessed by molecular fingerprints (terminal restriction fragment length polymorphism; T-RFLP) analysis.

Results

Anthracene contamination resulted in a significant reduction of bacterial abundance with an impact on cell integrity. Concomitantly, sediment oxygen consumption was strongly inhibited. Correspondence analysis on T-RFLP data indicated that bacterial community structures from anthracene-contaminated microcosms were different from that of the control. Interestingly, the changes observed in microbial biomass, structure, and activities as a result of anthracene contamination were not alleviated even with the use of biostimulation and combination of biostimulation and bioaugmentation strategy for anthracene bioremediation. Nevertheless, both treatment methods resulted in different community structures relative to the contaminated and control microcosms with the appearance of distinct populations.

Conclusion

Anthracene spiking severely affected microbial communities, suggesting dominance of nontolerant populations in this lightly-contaminated sediment. Although biostimulation and/or bioaugmentation treatments did not alleviate the anthracene toxic effects, the changes observed in microbial population and structure suggest that the proposed treatments might be promising to promote bacterial growth. Further works are still required to propose a more efficient strategy to stimulate biodegradation that takes into account the complex interactions between species for resource access.     

Exposure to chemical mixtures in Mexican children: high-risk scenarios

In developing countries, the management of environmental toxicants is inadequate, thus, humans may be exposed to levels higher than normal levels (background levels). Therefore, the aim of this study was to evaluate the exposure level of Mexican children to dichlorodiphenyltrichloroethane (DDT), dichlorodiphenyldichloroethylene (DDE), lead, and polycyclic aromatic hydrocarbons [using 1-hydroxypyrene (1-OHP) as exposure biomarker] and to assess the percentage of children exposed to these four compounds at concentrations higher than normal in each community studied. We performed random sampling in eight communities in Mexico (five communities in Chiapas State and three communities in San Luis Potosi State). DDT and DDE were analyzed by gas chromatography/mass spectrometry, the quantification of lead in blood was performed using atomic absorption spectrophotometry, and 1-OHP analyses were performed using HPLC with a fluorescence detector. Elevated DDT, DDE, and 1-OHP levels were found in children living in the indigenous communities of Chiapas State, while higher blood lead levels were found in two communities in San Luis Potosí. Approximately 30 % of children living in Chiapas were exposed to all four compounds at concentrations above the guidelines for each compound, whereas 48 % of children studied were exposed to all four contaminants at concentrations higher than normal in a community in San Luis Potosí State. As expected, our results showed that in hot spots, children are exposed to levels higher than normal. Therefore, child environmental health programs are urgently needed.     

The Estimation of Personal Exposures to Air Pollutants for a Community-Based Study of Health Effects in Asthmatics—Design and Results of Air Monitoring

In order to provide reliable pollutant and meteorological exposure estimates for an epidemiological study of asthmatics residing in two Houston neighborhoods, a dedicated three-tier air monitoring system was established. This consisted of fixed site ambient air monitoring at the center of each study area, a mobile van performing simultaneous indoor and outdoor measurements at selected residences of study participants, and a limited amount of direct personal monitoring for half of the participants. Monitored pollutants Included all criteria pollutant gases, as well as aeroallergens, aldehydes, TSP, and IP. Laboratory analyses provided concentrations of sulfate, nitrate, and trace elements. Continuous measurements of several meteorological parameters also were obtained. Intensive quality assurance and data validation efforts resulted in a high percentage of valid data for most pollutants. Ozone was the only measured pollutant that exceeded the NAAQS during the six-month (May to October) study period. The monitoring scheme allowed important pollutant concentration differences to be detected between day and night, between Indoors and outdoors, and among various indoor environments. The use of these monitoring data in combination with personal activity and household characteristics data to generate estimates of personal exposures for the epidemiological analysis will be described in a subsequent paper.     

Fog Chemistry at an Urban Midwestern Site

This work investigates the oxidative aging of preformed secondary organic aerosol (SOA) derived from α-pinene ozonolysis (～100 ppb_v hydrocarbon [HC_x] with excess of O₃) within the University of California–Riverside Center for Environmental Research and Technology environmental chamber that occurs after introduction of additional hydroxyl (OH) and nitrate (NO₃) radicals. Simultaneous measurements of SOA volume concentration, hygroscopicity, particle density, and elemental chemical composition (C:O:H) reveal increased particle wall-loss-corrected SOA formation (1.5%, 7.5%, and 15.1%), increase in oxygen-to-carbon ratio (O/C; 15.6%, 8.7%, and 8.7%), and hydrophilicity (4.2%, 7.4%, and 1.4%) after addition of NO (ultraviolet [UV] on), H₂O₂ (UV on), and N₂O₅ (dark), respectively. The processing observed as an increase in O/C and hydrophilicity is attributed to OH and NO₃ reactions with first-generation vapor products and UV photolysis. The rate of increase in O/C appears to be only sufficient to achieve semivolatile oxygenated organic aerosol (SV-OOA) on a day time scale even at the raised chamber radical concentrations. The additional processing with UV irradiation without addition of NO, H₂O₂, or N₂O₅ is observed, adding 5.5% wall-loss-corrected volume. The photolysis-only processing is attributed to additional OH generated from photolysis of the nitrous acid (HONO) offgasing from chamber walls. This finding indicates that OH and NO₃ radicals can further alter the chemical composition of SOA from α-pinene ozonolysis, which is proved to consist of first-generation products.

Implications: Secondary organic aerosol (SOA) may undergo aging processes once formed in the atmosphere, thereby altering the physicochemical and toxic properties of aerosol. This study discusses SOA aging of a major biogenic volatile organic compound (VOC; α-pinene) after it initially forms SOA. Aging of the α-pinene ozonolysis system by OH (through NO or H₂O₂ injection), NO₃ (through N₂O₅ injection), and photolysis is observed. Although the reaction rate appears to be only sufficient to achieve semivolatile oxygenated organic aerosol (SV-OOA) level of oxygenation on a 1-day scale, it is important that SOA aging be considered in ambient air quality models. Aging in this study is attributed to further oxidation of gas-phase oxidation products of α-pinene ozonolysis.

Supplemental Materials: Supplemental materials are available for this paper. Go to the publisher's online edition of the Journal of the Air &; Waste Management Association for information on the referenced α-pinene ozonolysis reaction and chamber reactor temperature.     

The Estimation of Personal Exposures to Air Pollutants for a Community-Based Study of Health Effects in Asthmatics—Exposure Model

Estimates of individual personal exposures to ozone, nitrogen dioxide, pollen, temperature, and relative humidity for a group of asthmatics participating In a health effects study were obtained by means of a modeling approach utilizing fixed site monitoring data, regression relationships between fixed site and indoor and outdoor micro-environment concentrations, study subject activity patterns, and study household characteristics. A considerable improvement in the accuracy of exposure assessment using the exposure model instead of fixed site measurements alone was demonstrated for ozone. This large refinement of ozone exposure estimates was achieved using a simplified approach which emphasized the large differences between Indoor and outdoor micro-environmental concentrations, and assumed relatively little heterogeneity in exposure within either of these two broad micro-environmental categories. Major sources of error in the exposure model for ozone Include: failure to Include Indoor microenvironments with no air conditioning in the development of the model, Inability to accurately apportion within-hour time spent in different microenvironments, and misclassification of hour-specific personal location by study subjects.     

Plan and Schedule for NAPAP’s 1989 and 1990 Assessment Reports

On the following pages is an excerpt from the Overview and Summary (Part 1) of the recently published 300-page National Acid Precipitation Assessment Program (NAPAP) document* that describes the planned activities of the Program for the next two years. This document has been made available for public review and an open meeting was held on November 17 in Washington, D.C. to receive comments on it. The Plan will be revised following consideration of these comments and published in January 1989.     

The roles of biological interactions and pollutant contamination in shaping microbial benthic community structure

Biological interactions between metazoans and the microbial community play a major role in structuring food webs in aquatic sediments. Pollutants can also strongly affect the structure of meiofauna and microbial communities. This study aims investigating, in a non-contaminated sediment, the impact of meiofauna on bacteria facing contamination by a mixture of three PAHs (fluoranthene, phenanthrene and pyrene). Sediment microcosms were incubated in the presence or absence of meiofauna during 30 days. Bioremediation treatments, nutrient amendment and addition of a hydrocarbon-degrading bacterium, were also tested to enhance PAH biodegradation. Results clearly show the important role of meiofauna as structuring factor for bacterial communities with significant changes observed in the molecular fingerprints. However, these structural changes were not concomitant with changes in biomass or function. PAH contamination had a severe impact on total meiofaunal abundance with a strong decrease of nematodes and the complete disappearance of polychaetes and copepods. In contrast, correspondence analysis, based on T-RFLP fingerprints, showed that contamination by PAH resulted in small shifts in microbial composition, with or without meiofauna, suggesting a relative tolerance of bacteria to the PAH cocktail. The PAH bioremediation treatments were highly efficient with more than 95% biodegradation. No significant difference was observed in presence or absence of meiofauna. Nutrient addition strongly enhanced bacterial and meiofaunal abundances as compared to control and contaminated microcosms, as well as inducing important changes in the bacterial community structure. Nutrients thus were the main structural factor in shaping bacterial community composition, while the role of meiofauna was less evident.     

Detection of presumed genes encoding beta-lactamases by sequence based screening of metagenomes derived from Antarctic microbial mats

• Beta-lactamase genes were found in all samples from distant places in Antarctica. • Class C beta-lactamase coding genes were the most frequently found. • Diversity of sequences exceeds that of the beta-lactamases from clinical environment. Analysis of environmental samples for bacterial antibiotic resistance genes may have different objectives and analysis strategies. In some cases, the purpose was to study diversity and evolution of genes that could be grouped within a mechanism of antibiotic resistance. Different protocols have been designed for detection and confirmation that a functional gene was found. In this study, we present a sequence-based screening of candidate genes encoding beta-lactamases in 14 metagenomes of Antarctic microbial mats. The samples were obtained from different sites, representing diverse biogeographic regions of maritime and continental Antarctica. A protocol was designed based on generation of Hidden Markov Models from the four beta-lactamase classes by Ambler classification, using sequences from the Comprehensive Antibiotic Resistance Database (CARD). The models were used as queries for metagenome analysis and recovered contigs were subsequently annotated using RAST. According to our analysis, 14 metagenomes analyzed contain A, B and C beta-lactamase genes. Class D genes, however, were identified in 11 metagenomes. The most abundant was class C (46.8%), followed by classes B (35.5%), A (14.2%) and D (3.5%). A considerable number of sequences formed clusters which included, in some cases, contigs from different metagenomes. These assemblies are clearly separated from reference clusters, previously identified using CARD beta-lactamase sequences. While bacterial antibiotic resistance is a major challenge of public health worldwide, our results suggest that environmental diversity of beta-lactamase genes is higher than that currently reported, although this should be complemented with gene function analysis.