Predator–prey models: an application for the plankton dynamics of lake Geneva

In this paper we present a hierarchical Bayesian analysis for a predator–prey model applied to ecology considering the use of Markov Chain Monte Carlo methods. We consider the introduction of a random effect in the model and the presence of a covariate vector. An application to ecology is considered using a data set related to the plankton dynamics of lake Geneva for the year 1990. We also discuss some aspects of discrimination of the proposed models.     

Conservation of the Toromiro Tree: Case Study in the Management of a Plant Extinct in the Wild

Abstract: We reviewed the history and conservation of Sophora toromiro , a species that has been extinct in the wild since 1960 but has survived as scattered individuals in botanic gardens and private collections. The short-term conservation of S. toromiro is dependent on the management of surviving ex situ stocks. This is being achieved through international collaboration by a working group established to coordinate the conservation management of the species. Molecular evidence indicates that the species retains greater genetic variability than expected. The greatest amount of genetic variability was located in specimens outside botanic garden collections. No unmodified natural habitat survives on Rapa Nui ( Easter Island); so opportunities to establish a viable wild population are limited. Evidence from past reintroductions indicates that the best short-term opportunity for the species is through conventional horticultural management in botanic gardens and traditional farm plots on Rapa Nui. Some extinct-in-the-wild taxa (sensu World Conservation Union 1994), such as the Toromiro, retain genetic variability, and appropriate reintroduction sites exist. These taxa represent valid priorities for conservation management.     

Electronic scraps--recovering of valuable materials from parallel wire cables

Every year, the number of discarded electro-electronic products is increasing. For this reason recycling is needed, to avoid wasting non-renewable natural resources. The objective of this work is to study the recycling of materials from parallel wire cable through unit operations of mineral processing. Parallel wire cables are basically composed of polymer and copper. The following unit operations were tested: grinding, size classification, dense medium separation, electrostatic separation, scrubbing, panning, and elutriation. It was observed that the operations used obtained copper and PVC concentrates with a low degree of cross contamination. It was concluded that total liberation of the materials was accomplished after grinding to less than 3 mm, using a cage mill. Separation using panning and elutriation presented the best results in terms of recovery and cross contamination.     

Symmetry, male dominance and female mate preferences in the Iberian rock lizard, Lacerta monticola

Female preference for dominant males is widespread and it is generally assumed that success in male-male competition reflects high quality. However, male dominance is not always attractive to females. Alternatively, relatively symmetric individuals may experience fitness advantages, but it remains to be determined whether males with more symmetrical secondary sexual traits experience advantages in both intra- and intersexual selection. We analysed the factors that determine dominance status in males of the lizard Lacerta monticola, and their relationship to female mate preference, estimated by the attractiveness of males' scents to females. Sexually dimorphic traits of this lizard (head size and femoral pores) appear to be advanced by different selection pressures. Males with relatively higher heads, which give them advantage in intrasexual contests, were more dominant. However, head size was unimportant to females, which preferred to be in areas marked by relatively heavier males, but also by males more symmetric in their counts of left and right femoral pores. Chemicals arising from the femoral pores and other glands might honestly indicate quality (i.e. related to the symmetry levels) of a male to females and may result from intersexual selection. Females may use this information because the only benefit of mate choice to female lizards may be genetic quality. Chemical signals may be more reliable and have a greater importance in sexual selection processes of lizards than has previously been considered.     

Environmental influence on commercial fishery landings of small pelagic fish in Portugal

Small pelagic fishes are particularly abundant in areas with high environmental variability (zones of coastal upwelling and areas of tidal mixing and river discharge), and because of this, their abundance suffers large inter-annual and inter-decadal fluctuations. In Portugal, the most important species in terms of landings are European sardine, Atlantic horse mackerel and Atlantic chub mackerel. Small pelagic fish landings account for 62.8 % of the total fish biomass and represent 32.7 % of the economical value of all catches. We have investigated trends in landings of these small pelagic fishes and detected the effects of environmental factors in this fishery. In order to explain the variability of landings of small pelagic fishes, we have used official landings (1965–2012) for trawling and purse seine fisheries and applied generalized linear models, using the North Atlantic Oscillation index (NAO) (annual and winter NAO index), sea surface temperature (SST), wind data (strength and North–South and East–West wind components) and rainfall, as explanatory variables. Regression analysis was used to describe the relationship between landings and SST. The models explained between 50.16 and 51.07 % of the variability of the LPUE, with the most important factors being winter NAO index, SST and wind strength. The LPUE of European sardine and Atlantic horse mackerel was negatively correlated with SST, and LPUE of Atlantic chub mackerel was positively correlated with SST. The use of landings of three important species of small pelagic fishes allowed the detection of variations in landings associated with changes in sea water temperature and NAO index.     

Phylogeography and evolution of the triplefin <Emphasis Type="Italic">Tripterygion delaisi</Emphasis> (Pisces,Blennioidei)

The genus Tripterygion (Risso 1826) is restricted to the eastern Atlantic and the Mediterranean, and comprises only three species. T. melanuros and T. tripteronotus are essentially endemic to the Mediterranean, while Tripterygion delaisi occurs in the Atlantic and in the Mediterranean. Two subspecies of T. delaisi have been described (T. d. xanthosoma in the Mediterranean and T. d. delaisi in the Atlantic). Several scenarios have been proposed for the evolution of T. delaisi subspecies, but so far its subspeciation process is not clear. In this study we present a population survey of T. delaisi including specimens from the two recognized subspecies. We combined a phylogeographic approach with estimates of the direction of migration (between the Atlantic and the Mediterranean) and of the coalescence time of the two subspecies, using polymorphic mitochondrial and nuclear genes. The results of this study clearly support the existence of two Tripterygion delaisi clades, one in the eastern Atlantic islands and another in the Atlantic coasts of Europe and in the Mediterranean. Historical migration between the islands and Western Europe plus Mediterranean was restricted, and showed a westbound trend, with a higher number of migrants going from the Western Europe plus Mediterranean into the islands. We estimated the time of coalescence of both groups of T. delaisi to be more recent than the onset of Pleistocene glaciations (1.7 Mya). Our results are consistent with previous hypothesis that consider successive dispersal events of a Tripterygion ancestor from the western African coast colonizing the Atlantic islands and the Mediterranean, promoting the evolutionary divergence between these areas.     

Larval development of <Emphasis Type="Italic">Lightiella magdalenina</Emphasis> (Crustacea,Cephalocarida)

The larval development of the newly discovered cephalocarid from Mediterranean sea, Lightiella magdalenina, was analysed using light and scanning electron microscopy. Twenty-nine larval specimens, divided into 15 metanaupliar and 2 juvenile stages of development, were found. The first six metanaupliar stages had an even number (6, 8, 10, 12, 14 and 16) of trunk segments including telson. The condition of 20 trunk segments, typical of the adult, was reached after another 4 stages by the addition of a single segment per stage. At this tenth stage, the larvae had an incomplete number of trunk limbs. Another five stages were needed to complete the cephalic appendage development, passing from the metanaupliar to the juvenile stage, characterized by loss of the naupliar enditic process of the second antenna. Trunk limbs development was completed during the last two juvenile stages. According to the ontogenetic data reported for Hutchinsoniella macracantha and Lightiella incisa, these seventeen stages probably do not represent the complete developmental series. Nevertheless, they allow us to clarify the main features of cephalocarid ontogeny and show specific differences in the development of both the trunk segments and appendages.     

Spatial Patterns of Water Quality in the Cuiabá River Basin, Central Brazil

This study evaluates the spatial patterns of land occupation and their relationship to water quality in the Cuiabá River watershed, one of the main affluents of the Pantanal floodplain. The impact of farming and other land occupation forms were studied using a three year time series. Monitoring included 15 parameters at 21 stations with a total of 1266 different samples. Ten stations along the Cuiabá River were ordinated by Principal Component Analysis (PCA). For an exploratory analysis in the spatial domain, sub-basins of the Cuiabá watershed were classified according to mean concentrations of selected water quality parameters. Supervised classification of digital Landsat ETM imagery and standard GIS techniques were applied to parameterize land use and occupation according to a watershed scale. Redundancy Analysis (RDA) was then used to evaluate impacts of environmental and socio-economic factors on water quality.A Cuiabá headwater station only shows slightly elevated total coliform counts and concentrations of nutrients in the river after it passes regions of extensive cattle farming. After the confluence with the Manso River, nutrient and COD concentrations increase significantly, receiving loads from sub-basins under intensive agricultural land use, with mean annual concentrations up to 1.74 mg/L of total nitrogen (Kjedahl). Sub-watersheds with intensive fishing culture activities were shown to have significant impact on nitrogen concentrations, reaching mean concentrations of 2.66 mg/L of total nitrogen in the affluents. Most serious biological and chemical water pollution can be observed at stream outlets in the urban agglomeration of Cuiabá/Várzea Grande. Affluent pollution is reflected in the water quality of the Cuiabá River: subsequent monitoring stations in the urban area are ordinated on a gradient of increasing degradation of chemical and biological water quality. The auto-depuration capacity of the Cuiabá River is intact, but elevated concentrations of Phosphorous and Chemical Oxygen Demand can be observed as far away as the Pantanal floodplain, about 120 km downstream from the urban agglomeration.