Using vertebrate environmental DNA from seawater in biomonitoring of marine habitats

Conservation and management of marine biodiversity depends on biomonitoring of marine habitats, but current approaches are resource-intensive and require different approaches for different organisms. Environmental DNA (eDNA) extracted from water samples is an efficient and versatile approach to detecting aquatic animals. In the ocean, eDNA composition reflects local fauna at fine spatial scales, but little is known about the effectiveness of eDNA-based monitoring of marine communities at larger scales. We investigated the potential of eDNA to characterize and distinguish marine communities at large spatial scales by comparing vertebrate species composition among marine habitats in Qatar, the Arabian Gulf (also known as the Persian Gulf), based on eDNA metabarcoding of seawater samples. We conducted species accumulation analyses to estimate how much of the vertebrate diversity we detected. We obtained eDNA sequences from a diverse assemblage of marine vertebrates, spanning 191 taxa in 73 families. These included rare and endangered species and covered 36% of the bony fish genera previously recorded in the Gulf. Sites of similar habitat type were also similar in eDNA composition. The species accumulation analyses showed that the number of sample replicates was insufficient for some sampling sites but suggested that a few hundred eDNA samples could potentially capture >90% of the marine vertebrate diversity in the study area. Our results confirm that seawater samples contain habitat-characteristic molecular signatures and that eDNA monitoring can efficiently cover vertebrate diversity at scales relevant to national and regional conservation and management.     

Decline and diversity in Swedish seas: Environmental narratives in marine history,science and policy

Ambio - Before the mid-twentieth century, there was no comprehensive narrative about empirical conditions in Swedish seas. Around 1970, this view changed profoundly. In line with growing research...     

Improving dialogue among researchers,local and indigenous peoples and decision-makers to address issues of climate change in the North

Ambio - The Circumpolar North has been changing rapidly within the last decades, and the socioeconomic systems of the Eurasian Arctic and Siberia in particular have displayed the most dramatic...     

Protective effects of thymoquinone against acrylamide-induced liver,kidney and brain oxidative damage in rats

Environmental Science and Pollution Research - Acrylamide (AA), an industrial monomer, may cause multi-organ toxicity through induction of oxidative stress and inflammation. The antioxidant...     

Spatial and temporal patterns and the socioeconomic impacts of landslides in the tropical and mountainous Colombian Andes

Landslides are a natural hazard that presents a major threat to human life and infrastructure. Although they are a very common phenomenon in Colombia, there is a lack of analysis that entails national and comprehensive spatial, temporal, and socioeconomic evaluations of such events based on historical records. This study provides a detailed assessment of the spatial and temporal patterns and the socioeconomic impacts associated with landslides that occurred in the country between 1900 and 2018. Two national landslide databases were consulted and this information was complemented by local and regional landslide catalogues. A total of 30,730 landslides were recorded in the 118-year period. Rainfall is the most common trigger of landslides, responsible for 92 per cent of those registered, but most fatalities (68 per cent) are due to landslides caused by volcanic activity and earthquakes. An ‘fN curve’ revealed a very high frequency of small and moderate fatal landslides in the time frame.     

Effect of Hunting on the Reproduction of the Sable Population

Russian Journal of Ecology - Analysis of hunting samples of the Kamchatka sable population for 2001–2013 has revealed changes in the reproductive parameters of females over the period from...     

Influence of Chronic Man-made Pollution on Bromus inermis Genome Size

Russian Journal of Ecology - Technogenic pollution can accelerate microevolutionary processes in natural populations. We estimated the nuclear DNA content of 10 Bromus inermis Leyss. samples from...     

Evaluation Of Ambient Air Pollution Impact On Carrot Plants At A Sub Urban Site Using Open Top Chambers

The present experiment was done to evaluate the impact of ambient air pollution on carrot (Dacus carotavar. Pusa Kesar) plants using open top chambers (OTCs) ventilated with ambient (NFCs) or charcoal filtered air (FCs) at a suburban site of Varanasi, India. Various morphological, physiological and biochemical characteristics of the plants were studied at different growth stages. Air monitoring data clearly showed high concentrations of SO₂, NO₂and O₃in the ambient air of study site. SO₂and NO₂concentrations were higher during early growth stages of carrot, whereas O₃concentration was highest during later growth stages. Filtration of air has caused significant reductions in all the three pollutant concentrations in FCs as compared to NFCs.Plants growing in FCs showed significantly higher photosynthetic rate, stomatal conductance, water use efficiency and variable fluorescence as compared to plants growing in NFCs. Protein content also showed a similar pattern, however, lipid peroxidation, ascorbic acid content and peroxidase activity were higher in plants growing in NFCs as compared to FCs. Shoot length, number of leaves per plant, leaf area and root and shoot weight increased significantly upon filtration of ambient air. Total nitrogen decreased significantly in root, but increased significantly in shoot of plants grown in NFCs. Total P, Mg, Ca and K contents decreased significantly in plants grown in NFCs as compared to FCs. The individual pollutant concentrations were below threshold for plant injury, but the combined effect of all the three seems to act synergistically in causing greater adverse impact on dry weight and physiology of carrot plants. The study clearly indicates that air pollutants are high enough in the ambient air to cause significant unfavorable impact on carrot plants. The work further supports the usefulness of OTCs for assessing air pollution damage under field conditions in developing countries.     

Using Ion-Exchange Resins to Study Soil Response to Experimental Watershed Acidification

Ion-exchange resins (IER) offer alternative approaches to measuring ionic movement in soils that may have advantages over traditional approaches in some settings, but more information is needed to understand how IER compare with traditional methods of measurement in forested ecosystems. At the Bear Brook Watershed in Maine (BBWM), one of two paired, forested watersheds is treated bi-monthly with S and N (28.8 and 25.2kgha⁻¹yr⁻¹ of S and N, respectively). Both IER and ceramic cup tension lysimeters were used to study soil solution responses after ∼11 years of treatment. Results from both methods showed treatments resulted in the mobilization of base cations and Al, and higher SO₄—S and inorganic N in the treated watershed. Both methods indicated similar differences in results associated with forest type (hardwoods versus softwoods), a result of differences in litter quality and atmospheric aerosol interception capacity. The correlation between lysimeter and IER data for individual analytes varied greatly. Significant correlations were evident for Na (r=0.75), Al (r=0.65), Mn (r=0.61), Fe (r=0.57), Ca (r=0.49), K (r=0.41) and NO₃—N (r=0.59). No correlation was evident between IER and soil solution data for NH₄—N and Pb. Both IER and soil solution techniques suggested similar interpretations of biogeochemical behavior in the watershed.     

Qualidex – A New Software for Generating Water Quality Indice

Water quality indice are necessary for resolving lengthy, multi-parameter, water analysis reports into single digit scores. This, in turn, is essential for comparing the water quality of different sources and in monitoring the changes in the water quality of a given source as a function of time and other influencing factors.In this paper we present the computer-automated tool QUALIDEX (water QUALIty inDEX), which has been developed by us to generate and operate water quality indice. Several popular indice – such as the Oregon Water Quality Index developed in the 1970s by Oregon Department of Environmental Quality and later updated in 1995, the Aquatic Toxicity Index developed by Wepener and coworkers for protection of aquatic life at the Olifants river, Kruger National Park, South Africa, the water quality index developed by Dinius in 1987, the Overall Index of Pollution (of surface waters) developed at the National Environmental Engineering Research Institute (NEERI), and the water quality index of the Central Pollution Control Board (CPCB) – have also been added to QUALIDEX in modular form. There is also a New water quality index sub-module which enables the user to generate his or her own index and compare its performance with these well-known indice. The package is also capable of analyzing the variations in the water quality of different sites at different times. The software has been coded in Visual C++ and has been integrated with MS Access database.