Genetic identity determines risk of post-settlement mortality of a marine fish

Longitudinal sampling of four cohorts of Neopomacentrus filamentosus, a common tropical damselfish from Dampier Archipelago, Western Australia, revealed the evolution of size structure after settlement. Light traps collected premetamorphic individuals from the water column ("settlers") to establish a baseline for each cohort. Subsequently, divers collected benthic juveniles ("recruits") at 1-3-month intervals to determine the relative impacts of post-settlement mortality during the first three months. Growth trajectories for individual fish were back-calculated from otolith records and compared with nonlinear mixed-effects models. Size-selective mortality was detected in all cohorts with the loss of smaller, slower growing individuals. Three months after settlement, recruits showed significantly faster growth as juveniles, faster growth as larvae, and larger sizes as hatchlings. The timing and intensity of post-settlement selection differed among cohorts and was correlated with density at settlement. The cohort with the greatest initial abundance experienced the strongest selective mortality, with most of this mortality occurring between one and two months after settlement when juveniles began foraging at higher positions in the water column. Significant genetic structure was found between settlers and three-month-old recruits in this cohort as a result of natural selection that changed the frequency of mtDNA haplotypes measured at the control region. The extent of this genetic difference was enlarged or reduced by artificially manipulating the intensity of size-based selection, thus establishing a link between phenotype and haplotype. Sequence variation in the control region of the mitochondrial genome has been linked to mitochondrial efficiency and weight gain in other studies, which provides a plausible explanation for the patterns observed here.     

Fragmented seagrass habitats on the Mediterranean coast, and distribution and abundance of mysid assemblages

Four different habitats were sampled in order to determine the spatial and temporal distribution and abundance of mysids in a seagrass meadow ecosystem. These habitats included meadows of Posidonia oceanica and Cymodocea nodosa, the edge of P. oceanica meadow and sandy substrates. Three random sites for each habitat were sampled along the coast of Alicante at different times, using a hand-net technique (6 m²). Seven species of mysids were identified: Leptomysis posidoniae, Leptomysis buergii, Paramysis helleri, Siriella clausii, Mesopodopsis slabberi, Siriella armata and Mysidopsis gibbosa. Total abundance of mysids was highest at the edge of the P. oceanica meadow, followed by the C. nodosa meadow, sandy substrate and P. oceanica meadow, respectively (P<0.05); this pattern was found during all sampling periods except one. Three species showed persistent spatial segregation by habitat (S. clausii in Posidonia; L. posidoniae at the edge; S. armata in Cymodocea), whereas the other four did not show any clear segregation by habitat (ANOVA, P<0.01). On a site scale (km), spatial variability was very high. Multivariate analyses confirm the existence of differences in the assemblage structure among habitats, with a gradual change from the Posidonia meadow to sand. Posidonia and Cymodocea showed different mysid assemblages. Fragmented, shallow, vegetated habitat on the Mediterranean coast seems to support a higher abundance and species richness of mysids, through habitat diversification, in comparison with homogeneous habitats.     

Evolutionary variation in the expression of phenotypically plastic color vision in Caribbean mantis shrimps, genus Neogonodactylus

Many animals have color vision systems that are well suited to their local environments. Changes in color vision can occur over long periods (evolutionary time), or over relatively short periods such as during development. A select few animals, including stomatopod crustaceans, are able to adjust their systems of color vision directly in response to varying environmental stimuli. Recently, it has been shown that juveniles of some stomatopod species that inhabit a range of depths can spectrally tune their color vision to local light conditions through spectral changes in filters contained in specialized photoreceptors. The present study quantifies the potential for spectral tuning in adults of three species of Caribbean Neogonodactylus stomatopods that differ in their depth ranges to assess how ecology and evolutionary history influence the expression of phenotypically plastic color vision in adult stomatopods. After 12 weeks in either a full-spectrum “white” or a narrow-spectrum “blue” light treatment, each of the three species evidenced distinctive tuning abilities with respect to the light environment that could be related to its natural depth range. A molecular phylogeny generated using mitochondrial cytochrome oxidase C subunit 1 (CO-1) was used to determine whether tuning abilities were phylogenetically or ecologically constrained. Although the sister taxa Neogonodactylus wennerae and N. bredini both exhibited spectral tuning, their ecology (i.e. preferred depth range) strongly influenced the expression of the phenotypically plastic color vision trait. Our results indicate that adult stomatopods have evolved the ability to undergo habitat-specific spectral tuning, allowing rapid facultative physiological modification to suit ecological constraints.     

Transport and fate of organic wastes in groundwater at the Stringfellow hazardous waste disposal site, southern California

In January 1999, wastewater influent and effluent from the pretreatment plant at the Stringfellow hazardous waste disposal site were sampled along with groundwater at six locations along the groundwater contaminant plume. The objectives of this sampling and study were to identify at the compound class level the unidentified 40-60% of wastewater organic contaminants, and to determine what organic compound classes were being removed by the wastewater pretreatment plant, and what organic compound classes persisted during subsurface waste migration. The unidentified organic wastes are primarily chlorinated aromatic sulfonic acids derived from wastes from DDT manufacture. Trace amounts of EDTA and NTA organic complexing agents were discovered along with carboxylate metabolites of the common alkylphenolpolyethoxylate plasticizers and nonionic surfactants. The wastewater pretreatment plant removed most of the aromatic chlorinated sulfonic acids that have hydrophobic neutral properties, but the p-chlorobenzene-sulfonic acid which is the primary waste constituent passed through the pretreatment plant and was discharged in the treated wastewaters transported to an industrial sewer. During migration in groundwater, p-chlorobenzenesulfonic acid is removed by natural remediation processes. Wastewater organic contaminants have decreased 3- to 45-fold in the groundwater from 1985 to 1999 as a result of site remediation and natural remediation processes. The chlorinated aromatic sulfonic acids with hydrophobic neutral properties persist and have migrated into groundwater that underlies the adjacent residential community.     

Study of the uncertainty in NO<Subscript>2</Subscript> chemiluminescence measurements due to the NO–O<Subscript>3</Subscript> reaction in sampling lines

Introduction  

The change in light intensity that takes place when an ambient air sample is drawn into the detection chamber of a chemiluminescence monitor generates changes in the concentrations of several species, such as NO₂, NO and O₃. Although this phenomenon has been known for several decades, there is still no commonly accepted approach on when or how to correct for it in NO₂ and O₃ readings.     

Hierarchical spatial modeling for estimation of population size

Estimation of population size has traditionally been viewed from a finite population sampling perspective. Typically, the objective is to obtain an estimate of the total population count of individuals within some region. Often, some stratification scheme is used to estimate counts on subregions, whereby the total count is obtained by aggregation with weights, say, proportional to the areas of the subregions. We offer an alternative to the finite population sampling approach for estimating population size. The method does not require that the subregions on which counts are available form a complete partition of the region of interest. In fact, we envision counts coming from areal units that are small relative to the entire study region and that the total area sampled is a very small proportion of the total study area. In extrapolating to the entire region, we might benefit from assuming that there is spatial structure to the counts. We implement this by modeling the intensity surface as a realization from a spatially correlated random process. In the case of multiple population or species counts, we use the linear model of coregionalization to specify a multivariate process which provides associated intensity surfaces hence association between counts within and across areal units. We illustrate the method of population size estimation with simulated data and with tree counts from a Southwestern pinyon-juniper woodland data set.     

Migration path annotation: cross-continental study of migration-flight response to environmental conditions

Understanding the movements of animals is pivotal for understanding their ecology and predicting their survival in the face of rapid global changes to climate, land use, and habitats, thus facilitating more effective habitat management. Migration by flying animals is an extreme form of movement that may be especially influenced by weather. With satellite telemetry studies, and the growing availability of information about the Earth's weather and land surface conditions, many data are collected that can advance our understanding about the mechanisms that shape migrations. We present the track annotation approach for movement data analysis using information about weather from the North American Reanalysis data set, a publicly available, regional, high-resolution model-observation hybrid product, and about topography, from a publicly available high-resolution digital elevation model (DEM). As a case study, we present the analysis of the response to environmental conditions in three contrasting populations of Turkey Vultures (Cathartes aura) across North America, tracked with a three-dimensional GPS-based sensor. Two populations in the east and west coasts of the United States responded similarly to weather, indicating use of both slope and thermal soaring. Continental-interior, "Plains populations," exhibited a different migratory pattern primarily indicative of thermal soaring. These differences help us understand the constraints and behaviors of soaring migrants. The track annotation approach allowed large-scale comparative study of movement in an important migratory species, and will enable similar studies at local to global scales.     

Invasive prey impacts the abundance and distribution of native predators

While an extensive literature exists on the negative effects of invasive species, little is known about their facilitative effects on native species, particularly the role of invasives as trophic subsidies to native predators. The invasive gypsy moth (Lymantria dispar) undergoes periodic outbreaks during which it represents a super-abundant food source for predators capable of consuming it, particularly native cuckoos (Coccyzus erythropthalmus and C. americanus). We examined how gypsy moth outbreaks affect the abundance and distribution of cuckoos using the North American Breeding Bird Survey and 29 years of U.S. Forest Service gypsy moth defoliation records. Abundances of both Black-billed and Yellow-billed Cuckoos were significantly above average during outbreaks, but populations were average or below average in preceding and subsequent years, suggesting that cuckoos are immigrating to defoliations during outbreak years. Spatial analyses showed that cuckoo abundances approximately 40-150 km outside of defoliation areas were significantly below average, and these under-occupied breeding areas extended in all four compass directions around outbreaks. This result supports the idea that cuckoos locate gypsy moth outbreaks during a post-migratory nomadic phase. By shifting the annual distribution of cuckoos, gypsy moths may be shifting the trophic impact of cuckoos across large distances, which could affect native insect herbivores and plants.