Testing hypotheses in evolutionary ecology with imperfect detection: capture-recapture structural equation modeling

Studying evolutionary mechanisms in natural populations often requires testing multifactorial scenarios of causality involving direct and indirect relationships among individual and environmental variables. It is also essential to account for the imperfect detection of individuals to provide unbiased demographic parameter estimates. To cope with these issues, we developed a new approach combining structural equation models with capture-recapture models (CR-SEM) that allows the investigation of competing hypotheses about individual and environmental variability observed in demographic parameters. We employ Markov chain Monte Carlo sampling in a Bayesian framework to (1) estimate model parameters, (2) implement a model selection procedure to evaluate competing hypotheses about causal mechanisms, and (3) assess the fit of models to data using posterior predictive checks. We illustrate the value of our approach using two case studies on wild bird populations. We first show that CR-SEM can be useful to quantify the action of selection on a set of phenotypic traits with an analysis of selection gradients on morphological traits in Common Blackbirds (Turdus merula). In a second case study on Blue Tits (Cyanistes caeruleus), we illustrate the use of CR-SEM to study evolutionary trade-offs in the wild, while accounting for varying environmental conditions.     

Involuntary retirement,bridge employment,and satisfaction with life: A longitudinal investigation

The increased popularity of bridge employment has raised questions about its consequences for well‐being in late adult life. This research explored the consequences of bridge employment for the level of life satisfaction of older adults during the retirement transition period. Changes in life satisfaction were considered to be a function of the different intentions and motives for taking bridge jobs. Furthermore, the impact of bridge employment was empirically examined conditional on the voluntariness of the exit from the career job. Panel data on Dutch retirees (N = 1248) were investigated using conditional change models. The results demonstrate that older adults willing to prolong their work careers but unable to find bridge jobs reported lower levels of life satisfaction compared with full retirees not considering bridge employment. In addition, participation in bridge employment for financial motives was associated with decreases in life satisfaction compared with postretirement working based on intrinsic motives. Moreover, compared with voluntary retirement, involuntary retirement was detrimental to life satisfaction, but participation in a bridge job was found to mitigate this negative shock. These findings contribute to the understanding of the consequences of various postretirement employment trajectories for older individuals. Copyright © 2013 John Wiley & Sons, Ltd.     

Identification of Putative Geographically Isolated Wetlands of the Conterminous United States

Geographically isolated wetlands (GIWs) are wetlands completely surrounded by uplands. While common throughout the United States (U.S.), there have heretofore been no nationally available, spatially explicit estimates of GIW extent, complicating efforts to understand the myriad biogeochemical, hydrological, and habitat functions of GIWs and hampering conservation and management efforts at local, state, and national scales. We used a 10‐m geospatial buffer as a proxy for hydrological or ecological connectivity of National Wetlands Inventory palustrine and lacustrine wetland systems to nationally mapped and available stream, river, and lake data. We identified over 8.3 million putative GIWs across the conterminous U.S., encompassing nearly 6.5 million hectares of wetland resources (average size 0.79 ± 4.81 ha, median size 0.19 ha). Putative GIWs thus represent approximately 16% of the freshwater wetlands of the conterminous U.S. The water regime for the majority of the putative GIWs was temporarily or seasonally flooded, suggesting a vulnerability to ditching or hydrologic abstraction, sedimentation, or alterations in precipitation patterns. Additional analytical applications of this readily available geospatially explicit mapping product (e.g., hydrological modeling, amphibian metapopulation, or landscape ecological analyses) will improve our understanding of the abundance and extent, effect, connectivity, and relative importance of GIWs to other aquatic systems of the conterminous U.S.     

Monitoring nutrients fate after digestate spreading in a short rotation buffer area

One of the main sources of reactive nitrogen pollution is animal manure. The disposal of digestate (material remaining after the anaerobic digestion of a biodegradable feedstock) in agricultural soils could solve both the problems of soil fertilization and waste removal, but the fate of digestate in the environment must be assessed carefully before its massive utilization. To investigate whether digestate could be safely employed as a soil fertilizer, an agricultural field located in Monastier di Treviso (Northern Italy) and characterized by the presence of low hydraulic conductivity clay soils, was selected to be amended with bovine digestate. The experimental site was intensively monitored by a three-dimensional array of probes recording soil water content, temperature, and electrical conductivity, to solve the water and bulk mass fluxes in the unsaturated zone. High-resolution soil coring allowed the characterization of soil water composition over two hydrological years. Chloride, found in high concentrations in the digestate, was used as environmental tracer to track the fate of the percolating water. The study concluded that digestate could be confidently employed in short rotation buffer areas at an average rate of 195 ± 26 kg-N/ha/year in low hydraulic conductivity soils not affected by diffuse fracturing during dry periods.     

Managing tricky decentralised competencies: case study of a participatory modelling experiment on land use in the Lake Guiers area in Northern Senegal

We describe an action-research project whose objective was to help stakeholders at different organisational levels achieve sustainable land management by developing mediation models and tools. We chose to test a specific approach called companion modelling in the framework of a multidisciplinary research partnership and a formal local partnership (a ‘users committee’) involving an array of stakeholders at different organisational levels. The study area covers 10,000 km² of agro-pastoral land around Lake Guiers in northern Senegal. We conducted studies to update the knowledge base of the area and organised six field workshops that clearly revealed three important tool functions to support decision-making on land use at different scales, i.e. understanding maps, monitoring and evaluating land tenure, and foreseeing changes in land use. We found that a toolbox approach was the best way to implement the three functions and overcome the constraints faced by the research team and those linked to the timing of the project. Therefore, we produced five simple complementary tools aimed at various users: a farm-level optimisation model (for researchers and technical services), a database for land allocations and a discussion tool to assess the impact of land allocation decisions (for the rural council), a paper atlas (for local players) and a regional land use change simulation model (for regional and national planners). Participants were able to work with paper maps, to interpret computer-generated simulations of land use change and understand the strengths and limitations of each. Self-assessment of the research process emphasised the importance of the context and the critical role played by social capital at both the research and the field level, which, in turn, emphasised the need for major improvements in the design and implementation of a quality process for participatory modelling. It turns out that action-research may be an effective way to undertake sustainability science.     

Linking Theory and Practice for Restoration of Step-Pool Streams

Step-pools sequences are increasingly used to restore stream channels. This increase corresponds to significant advances in theory for step-pools in recent years. The need for step-pools in stream restoration arises as urban development encroaches into steep terrain in response to population pressures, as stream channels in lower-gradient areas require stabilization due to hydrological alterations associated with land-use changes, and as step-pools are recognized for their potential to enhance stream habitats. Despite an increasingly voluminous literature and great demand for restoration using step-pool sequences, however, the link between theory and practice is limited. In this article, we present four unique cases of stream restoration using step-pools, including the evolution of the approaches, the project designs, and adjustments in the system following restoration. Baxter Creek in El Cerrito, California demonstrates an early application of artificial step-pools in which natural adjustments occurred toward geomorphic stability and ecological improvement. Restoration of East Alamo Creek in a large residential development near San Ramon, California illustrates an example of step-pools increasingly used in locations where such a channel form would not naturally occur. Construction of a step-pool channel in Karnowsky Creek within the Siuslaw National Forest, Oregon overcame constraints posed by access and the type and availability of materials; the placement of logs allowed natural scouring below steps. Dry Canyon Creek on the property of the Mountains Restoration Trust in Calabasas, California afforded a somewhat experimental approach to designing step-pools, allowing observation and learning in the future. These cases demonstrate how theories and relationships developed for step-pool sequences over the past two decades have been applied in real-world settings. The lessons from these examples enable us to develop considerations useful for deriving an appropriate course of design, approval, and construction of artificial step-pool systems. They also raise additional fundamental questions concerning appropriate strategies for restoration of step-pool streams. Outstanding challenges are highlighted as opportunities for continuing theoretical work.     

Prenatal diagnosis for Epidermolysis bullosa: a study of 144 consecutive pregnancies at risk

Epidermolysis bullosa (EB) is a group of inherited disorders characterized by increased skin fragility, resulting in blisters and erosions after minor trauma. Mutations in 10 structural genes expressed in the cutaneous basement membrane zone have been reported. The DebRA Molecular Diagnostics Laboratory at Jefferson Medical College has performed 144 DNA-based prenatal diagnoses since 1993 in families at risk for recurrence of the most severe forms of EB, including the recessive dystrophic EB (RDEB), junctional EB (JEB), EB with pyloric atresia (EB-PA), and EB simplex (EBS). A mutation-detection strategy using either conformation-sensitive gel electrophoresis (CSGE) or denaturing high-performance liquid chromatography (dHPLC) scanning analysis, followed by nucleotide sequencing, was applied to most cases with DEB and to all JEB, EB-PA, and EBS families. For some RDEB families, linkage analysis was performed, either alone when the inheritance pattern was clear or in combination with one mutation. Among the 144 prenatal diagnoses, 63 were for RDEB, 69 for JEB, 6 for EB-PA, and 6 for EBS. Twenty-eight normal, 73 heterozygous carrier, and 28 affected RDEB, JEB, and EB-PA pregnancies were reported in these recessively inherited diseases. Two affected and four normal pregnancies were predicted in dominantly inherited EBS. Among the 144 pregnancies, 9 were terminated without confirmation, 13 cases were lost to follow-up, and 6 pregnancies are ongoing. There were 6 families with inconclusive results due either to recombination events between flanking markers, absence of informative markers for one allele, or lack of sample from the previously affected child. There were three discordant results, one that was explained by maternal contamination of the chorionic villus sample and two that were unresolved. Overall, the availability, relative ease, and over 98% success rate make molecular DNA-based prenatal diagnosis a viable option for EB families at risk. Copyright © 2003 John Wiley & Sons, Ltd.