The arcsine is asinine: the analysis of proportions in ecology

The arcsine square root transformation has long been standard procedure when analyzing proportional data in ecology, with applications in data sets containing binomial and non-binomial response variables. Here, we argue that the arcsine transform should not be used in either circumstance. For binomial data, logistic regression has greater interpretability and higher power than analyses of transformed data. However, it is important to check the data for additional unexplained variation, i.e., overdispersion, and to account for it via the inclusion of random effects in the model if found. For non-binomial data, the arcsine transform is undesirable on the grounds of interpretability, and because it can produce nonsensical predictions. The logit transformation is proposed as an alternative approach to address these issues. Examples are presented in both cases to illustrate these advantages, comparing various methods of analyzing proportions including untransformed, arcsine- and logit-transformed linear models and logistic regression (with or without random effects). Simulations demonstrate that logistic regression usually provides a gain in power over other methods.     

Factors influencing survival duration and choice of virgin queens in the stingless bee Melipona quadrifasciata

In Melipona quadrifasciata, about 10 % of the females develop into queens, almost all of which are killed. Occasionally, a new queen replaces or supersedes the mother queen or heads a new colony. We investigated virgin queen fate in queenright and queenless colonies to determine the effects of queen behaviour, body mass, nestmate or non-nestmate status, queenright or queenless colony status, and, when queenless, the effect of the time a colony had been queenless, on survival duration and acceptance. None of 220 virgin queens observed in four observation hives ever attacked another virgin queen nor did any of 88 virgin queens introduced into queenright colonies ever attack the resident queen. A new queen was only accepted in a queenless colony. Factors increasing survival duration and acceptance of virgin queens were to emerge from its cell at 2 h of queenlessness, to hide, and to avoid fights with workers. In this way, a virgin queen was more likely to be available when a colony chooses a new queen, 24-48 h after resident queen removal. Running, walking or resting, antennating or trophallaxis, played little or no role, as did the factors body mass or nestmate. “Queen choice” took about 2 h during which time other virgin queens were still being killed by workers. During this agitated process, the bees congregated around the new queen. She inflated her abdomen and some of the workers deposited a substance on internal nest surfaces including the glass lid of the observation hive.     

Hydrogeochemical investigations to assess groundwater and saline water interaction in coastal aquifers of the southeast coast,Tamil Nadu,India

Environmental Science and Pollution Research - Groundwater and saline water interaction is the most common processes in the coastal aquifers that alters the quality of aquifer waters. The...     

Stream biodiversity and monitoring in North Central,Nigeria: the use of macroinvertebrate indicator species as surrogates

Indicator species (IS) have been employed in modern aquatic research for monitoring of environmental changes and evaluating the efficiency of environmental management procedures. In this study, we evaluated the possibility of developing surrogate indicator groups as tools for the conservation and management of the biodiversity of Northern Nigeria streams by surveying 15 streams in Niger state for benthic macroinvertebrates and environmental variables as data sets, over a period of 24 months (2016 and 2017). Samples were collected in two locations of reference and impacted sites for each of the streams surveyed. The statistically significant (P < 0.05; based on 1000 permutations) indicator species for each of the status classes (reference versus impacted) was identified using the indicator species analysis/indicator value (Indval) method. Canonical correspondence analysis (CCA) was used to evaluate the IS-environment relationships. Indicator value found fifteen species for the reference streams including Ephemeropteran (Bugilliesia sp., Tricorythus sp., Thraulus sp., Crassabwa sp.) and the Tricopteran (Leptonema sp.). Opposite, the Indval found seven (7) indicator species for the impacted streams, which included the Dipteran (Pentaneura sp., Tabanus sp.). Multivariate analysis revealed that species assemblage had wide dispersal patterns in relation to the sites for both status classes. CCA revealed that the reference and impacted indicator species responded to entirely different environmental factors, indicating their preference to particular environmental variables along the ecological gradients. While the indicator species of reference sites were associated with environmental predictors of good water quality such as high DO, increased flow, low conductivity, and low BOD, the indicator species of impacted sites were strongly related to environmental predictors of anthropogenic pollution, including low DO, high BOD, and increased nutrients concentrations. This study has provided a reference point and effective tool to monitor environmental changes, community, and ecosystem dynamics across the Northern Nigeria streams.

     

Economic Conditions,the Policy Cycle,and Media Visibility of Environmental Organizations

The extent to which social movements have access to the news media has important implications on the capability of social movements to communicate with and garner support from the public. Factors that shape movement organizations' media visibility thus deserve scholarly attention. This article deals with news coverage of environmental movement organizations (EMOs) in Hong Kong and focuses on the impact of economic conditions, the policy cycle, and the number of EMOs in society on media visibility of EMOs. Analysis of a data-set constructed based on archival data and official statistics illustrates that all three factors influence media visibility of EMOs through media attention to environmental issues, while the number of EMOs and economic conditions also affect media visibility of EMOs directly. In-depth interview data are then used to supplement the quantitative analysis by showing how movement activists perceive and respond strategically to the structural factors. Theoretical implications of the findings are discussed.     

Honey bee waggle dance communication: signal meaning and signal noise affect dance follower behaviour

Returning honey bee foragers perform waggle dances to inform nestmate foragers about the presence, location and odour of profitable food sources and new nest sites. The aim of this study is to investigate how the characteristics of waggle dances for natural food sources and environmental factors affect dance follower behaviour. Because food source profitability tends to decrease with increasing foraging distance, we hypothesised that the attractiveness of a dance, measured as the number of dance followers and their attendance, decreases with increasing distance to the advertised food location. Additionally, we determined whether time of year and dance signal noise, quantified as the variation in waggle run direction and duration, affect dance follower behaviour. Our results suggest that bees follow fewer waggle runs as the food source distance increases, but that they invest more time in following each dance. This is because waggle run duration increases with increasing foraging distance. Followers responded to increased angular noise in dances indicating more distant food sources by following more waggle runs per dance than when angular noise was low. The number of dance followers per dancing bee was also affected by the time of year and varied among colonies. Our results provide evidence that both noise in the message, that is variation in the direction component, and the message itself, that is the distance of the advertised food location, affect dance following. These results indicate that dance followers may pay attention to the costs and benefits associated with using dance information.     

Stalked tunicates Boltenia ovifera form biogenic habitat in the rocky subtidal zone of Nova Scotia

The stalked tunicate Boltenia ovifera is widely distributed in the Arctic and North Atlantic oceans on rocky substrata at 10–300 m depth, although its ecological role in benthic communities is poorly understood. The distribution and abundance of B. ovifera were recorded at 10–100 m depth in towed-video transects in November 2011 and in June, July, and November 2012 off a wave-exposed headland near Halifax, Nova Scotia. Specimens also were collected at 30 m depth using SCUBA (44°26.88′N, 63°31.59′W) in September 2012. Areas dominated by B. ovifera had densities of 10–100 individuals m^?2 on rocky substrata at 30–60 m depth. These tunicate beds often were associated with sparse kelp (Agarum clathratum) and turf-forming red algae. A generalized additive model indicated that depth, substrate type, and benthic algal type were strong predictors of tunicate abundance. Twenty-two epibiotic species were found on specimens of B. ovifera, including juvenile conspecifics. Filter-feeding macroinvertebrates, including anemones and soft corals, were more abundant in areas with B. ovifera than in areas without these tunicates. Our findings suggest that beds of B. ovifera can act as biogenic habitat to enhance local species richness in the rocky subtidal zone of Nova Scotia.     

Bridging research and practice in conservation

Calls for biodiversity conservation practice to be more evidence based are growing, and we agree evidence use in conservation practice needs improvement. However, evidence-based conservation will not be realized without improved access to evidence. In medicine, unlike in conservation, a well-established and well-funded layer of intermediary individuals and organizations engage with medical practitioners, synthesize primary research relevant to decision making, and make evidence easily accessible. These intermediaries prepare targeted evidence summaries and distribute them to practitioners faced with time-sensitive and value-laden decisions. To be effective, these intermediaries, who we refer to as evidence bridges, should identify research topics based on the priorities of practitioners; synthesize evidence; prepare and distribute easy-to-find and easy-to-use evidence summaries; and develop and maintain networks of connections with researchers and practitioners. Based on a review of the literature regarding evidence intermediaries in conservation and environmental management, as well as an anonymous questionnaire searching for such organizations, we found few intermediaries that met all these criteria. Few evidence bridges that do exist are unable to reach most conservation practitioners, which include resource managers in government and industry, conservation organizations, and farmers and other private landowners. We argue that the lack of evidence bridges from research to practitioners contributes to evidence complacency and limits the use of evidence in conservation action. Nevertheless, several existing organizations help reduce the gap between evidence and practice and could serve as a foundation for building additional components of evidence bridges in conservation. Although evidence bridges need expertise in research and evidence synthesis, they also require expertise in identifying and communicating with the community of practitioners most in need of clear and concise syntheses of evidence. Article Impact Statement: Evidence-based conservation will not be realized without improved access to evidence. We call for intermediary evidence bridges.     

Enhanced dichloroethene biodegradation in fractured rock under biostimulated and bioaugmented conditions

Significant microbial reductive dechlorination of [1,2 ¹⁴C] cis‐dichloroethene (DCE) was observed in anoxic microcosms prepared with unamended, fractured rock aquifer materials, which were colonized in situ at multiple depths in two boreholes at the Naval Air Warfare Center (NAWC) in West Trenton, New Jersey. The lack of significant reductive dechlorination in corresponding water‐only treatments indicated that chlororespiration activity in unamended, fractured rock treatments was primarily associated with colonized core material. In these unamended fractured rock microcosms, activity was highest in the shallow zones and generally decreased with increasing depth. Electron‐donor amendment (biostimulation) enhanced chlororespiration in some but not all treatments. In contrast, combining electron‐donor amendment with KB1 amendment (bioaugmentation) enhanced chlororespiration in all treatments and substantially reduced the variability in chlororespiration activity both within and between treatments. These results indicate (1) that a potential for chlororespiration‐based bioremediation exists at NAWC Trenton but is limited under nonengineered conditions, (2) that the limitation on chlororespiration activity is not entirely due to electron‐donor availability, and (3) that a bioaugmentation approach can substantially enhance in situ bioremediation if the requisite amendments can be adequately distributed throughout the fractured rock matrix. © 2012 Wiley Periodicals, Inc.*