Power matters in closing the phenotyping gap

Much of our understanding of physiology and metabolism is derived from investigating mouse mutants and transgenic mice, and open-access platforms for standardized mouse phenotyping such as the German Mouse Clinic (GMC) are currently viewed as one powerful tool for identifying novel gene-function relationships. Phenotyping or phenotypic screening involves the comparison of wild-type control mice with their mutant or transgenic littermates. In our study, we explored the extent to which standardized phenotyping will succeed in detecting biologically relevant phenotypic differences in mice generated and provided by different collaborators. We analyzed quantitative metabolic data (body mass, energy intake, and energy metabolized) collected at the GMC under the current workflow, and used them for statistical power considerations. Our results demonstrate that there is substantial variability in these parameters among lines of wild-type C57BL/6 (B6) mice from different sources. Given this variable background noise in mice that serve as controls, subtle phenotypes in mutant or transgenic littermates may be overlooked. Furthermore, a phenotype observed in one cohort of a mutant line may not be reproducible (to the same extent) in mice coming from a different environment or supplier. In the light of these constraints, we encourage researchers to incorporate information on intrastrain variability into future study planning, or to perform advanced hierarchical analyses. Both will ultimately improve the detectability of novel phenotypes by phenotypic screening. Carola W. Meyer and Ralf Elvert contributed equally to this work.     

Influence of Chronic Man-made Pollution on Bromus inermis Genome Size

Russian Journal of Ecology - Technogenic pollution can accelerate microevolutionary processes in natural populations. We estimated the nuclear DNA content of 10 Bromus inermis Leyss. samples from...     

Potentials and impacts of short-rotation coppice plantation with aspen in Eastern Germany under conditions of climate change

Woody biomass generated in short-rotation coppice (SRC) plantations with aspen (Populus tremula L.) has good properties for bioenergy crop production: annual yields are high, labour input per year is low, and it is ecologically valuable because of the multi-year rotation periods. Eastern Germany has a special advantage in producing bioenergy crops: the former “agricultural cooperatives” built up quite large farms with, compared to Western Germany, comparatively large fields. Therefore, a modelling study of the potential and the impacts of aspen SRC plantations in the five eastern federal states of Germany under the recent climate and future climate projections was conducted. The ecophysiological forest growth model 4C was used to simulate the growth of aspen SRC plantations and their impacts on carbon in soils, and groundwater recharge, on selected suitable areas currently under crops but with marginal site conditions for cropping. A clear signal to enhanced growth condition over the whole area can be seen in the simulation of the mean annual woody biomass yield under conditions of climate change, which increased from 7.47 t DW ha⁻¹ a⁻¹ under the recent climate to 9.26 t DW ha⁻¹ a⁻¹ at the end of the considered future period 2034–2055 under climate change. The mean soil carbon sequestration rate was 0.81 t C ha⁻¹ a⁻¹ under the recent climate and could rise up to 0.93 t C ha⁻¹ a⁻¹ under the assumption of climate change. On the other hand, the mean annual percolation rate, used as an indicator of impacts on the regional water budget, will diminish under future climatic conditions. The results suggest that aspen SRC plantations are a suitable contribution to regional CO₂ mitigation and carbon sequestration under possible change of climate, but that negative impacts on the regional water budget are possible.     

The Formation of Mg3Ca(S04)4 during the Sulfation Reaction of Dolomite

Abstract

Inspection and maintenance programs for motor vehicles in the United States increasingly use loaded mode mass emissions testing (IM240). A method was developed to predict mass emission rates and mass emission changes, particularly from repair benefits, using a low-cost, portable four-gas non-dispersive infrared (NDIR) vehicle exhaust gas analyzer. A single vehicle was tested several times with the analyzer while on the dynamometer and undergoing successive repairs. Excellent correlations for CO and HC were observed. Five vehicles were measured using an on-road driving loop before and after emissions-related repairs, while another three vehicles were tested with no repairs performed. The on-road concentration data used to guide the repair process were converted to grams per gallon; when divided by estimated miles per gallon, this gave grams per mile emissions for comparison to IM240. Correlation coefficients (r²) of 0.87 for CO and 0.76 for HC were achieved for the 13 tests. The linear correlations between IM240 and emissions measured by this method would allow repair facilities to perform a relatively inexpensive test for diagnostic purposes and to estimate repair effectiveness without the need for a dynamometer.     

A Methodological Approach for Exposure Assessment Studies in Residences Using Volatile Organic-Compound-Contaminated Water

Abstract

This paper presents a methodological approach for assessing total exposures to volatile organic compounds (VOCs) in residences using contaminated water supplies. This approach is founded on assessment of ingestion, inhalation, and dermal exposures; both long-term (i.e., 12 to 24 hr) lowlevel exposures and short-term (i.e., =10 min) high-level exposures are considered.

The methodology is based on the collection of water samples to establish the identity of the contaminants, maximum source terms, and possible dermal and ingestion exposures; integrated whole-air samples are collected to assess long- and short-term inhalation exposures; whole-air grab samples are used to confirm peak and typical inhalation exposures; and alveolar breath samples are used to confirm exposures and to estimate contaminant concentrations in the blood of the test subjects. While we do not suggest that this methodology should supersede any current investigative approach, this material is primarily offered as a consolidated reference to the many people or organizations who might contemplate a study of this type. Application of this investigative protocol should provide detailed exposure assessment information, while it supplies critical real world data for risk assessment specialists, toxicologists, and modeling experts. Data from a recent field study assessing exposures to trichloroethylene are presented to illustrate the utility and some of the limitations of this strategy.     

Oxidative properties of ambient PM2.5 and elemental composition: Heterogeneous associations in 19 European cities

We assessed the extent to which constituents of PM_2.5 (transition metals, sodium, chloride) contribute to the ability to generate hydroxyl radicals (OH) in vitro in PM_2.5 sampled at 20 locations in 19 European centres participating in the European Community Respiratory Health Survey. PM_2.5 samples (n = 716) were collected on filters over one year and the oxidative activity of particle suspensions obtained from these filters was then assessed by measuring their ability to generate OH in the presence of hydrogen peroxide. Associations between OH formation and the studied PM constituents were heterogeneous. The total explained variance ranged from 85% in Norwich to only 6% in Albacete. Among the 20 centres, 15 showed positive correlations between one or more of the measured transition metals (copper, iron, manganese, lead, vanadium and titanium) and OH formation. In 9 of 20 centres OH formation was negatively associated with chloride, and in 3 centres with sodium. Across 19 European cities, elements which explained the largest variations in OH formation were chloride, iron and sodium.     

Balancing between mutualism and exploitation: the symbiotic interaction between Lasius ants and aphids

Nests of Lasius niger (L.) ants were given varied food regimens to test whether their behaviour towards an aphid partner, Aphis fabae (Scop.), changed with alternative food supplies. Honeydew collection and predation on aphids were measured by video monitoring the movement of ants between their nest and an aphid aggregation. Data collected from the aphid aggregations enabled comparisons between remaining aphid biomass and between the tending intensities of the ants. I tested how ant behaviour was influenced by their access to alternative prey and sugar. The results showed that ants accepted a honey solution as a substitute for the honeydew produced by aphids. Ants not only attended their aphid partners, but also preyed on them. The average predation rate increased eightfold when ants were offered the alternative of sugar, whereas alternative prey had no significant effect. In contrast, ant-tending intensity decreased with alternative sugar whereas alternative prey elicited no effect.     

Quinones in cockchafers: additional function of a sex attractant as an antimicrobial agent

Summary. Females of the forest cockchafer, Melolontha hippocastani Fabr. (Coleoptera: Scarabaeidae, Melolonthinae), are known to produce toluquinone and 1,4-benzoquinone. The latter component has been shown in our earlier studies to act as a sex attractant that enhances synergistically the attraction of males towards plant volatiles induced by feeding females. Analyses of whole body extracts from adults and grubs (L3) of M. hippocastani by coupled gas chromatography--mass spectrometry revealed the presence of 1,4-benzoquinone and toluquinone also in males and larvae. Quantitative analyses showed that extracts from females contained significantly more of 1,4-benzoquinone and toluquinone than extracts from males. Remarkably, extracts from grubs contained significantly higher amounts of both compounds than extracts from females. Inhibition assays using Escherichia coli, Saccharomyces cerevisiae, and the entomopathogenic fungi Metarhizium anisopliae and Beauveria brongniartii revealed inhibitory effects of 1,4-benzoquinone and toluquinone against all tested microorganisms. However, the amounts necessary for inhibition of entomopathogenic fungi and S. cerevisiae in the laboratory assay were higher than those found in the extracts from M. hippocastani.     

Teil V: Bewertung landwirtschaftlich-industrieller Stoffströme

Agricultural and industrial production chains as product lines are connected and their assessment is performed for a varnish based on linseed oil that is almost completely composed of renewable raw materials. Using a production line analysis, the ecological and social effects of the production are assessed, and different assessment techniques for ecological assessment are used as well. The life cycle inventory results from a material flow analysis including pre-production chains. For optimisation, a scenario of conventional agricultural linseed oil production against ecologically produced linseed oil is assessed. All assessment methods identify the same aspect of the product as the most important: The content of volatile organic compounds (VOC), that are released during usage. Further problems such as waste in the oil mill, emittance of acidic substances (mostly NO_x) from burning and heavy metals from tinplate production for containers are identified only from one or another of the assessment methods, a feature which stresses the influence on results from the choice of method. All methods prefer the ecological production of linseed, but the significance regarding the system boundaries is low (0.6% UBP, 1.7% Eco-indicator) due to dominating VOC-emissions. The use of material flow analyses in LCA is possible for agricultural production, especially seamless connection is provided between the different production steps. Also parameterisation is easy so that the defining of scenarios is efficient and transparent.