Deoxyribonucleotide synthesis and the emergence of DNA in molecular evolution

DNA replication requires monomeric deoxyribonucleotides, which cannot be regarded as primary products of organic syntheses on a primitive earth. However, the present biosynthetic pathway — reductive elimination of the 2′-OH group from ribonucleotides, catalyzed by ribonucleotide reductases and thioredoxins — suggests an early, polyphyletic combination of protein-nucleotide interactions and metal catalysis. That key process had to precede the upcome of RNA-DNA dualism on the way from RNA-protein protocells to true organisms.     

Analyse „stetigkeitsbasierter“ Methoden zur Bestimmung von Stofffrachten in Fließgewässern

Aim and background

Increasing ecological awareness puts the load as a tool for water quality assessment in the foreground. Therefore it is very desirable to find optimal procedures for any given situation on basis of existing data. Criteria will be derived to fill that desire.

Method

The load for a water ingredient is an integrated entity of time-continuous loads (product of concentration and flow) for a given time, i.?e. a year (yearly load). Normally you can only observe a sample (in a statistical meaning) of these data. Therefore, load calculations vary with the concrete sample given. Each such calculation represents an estimation of the load, afflicted with some uncertainty. This uncertainty can be quantified, at least approximatively, by adding variance (scatter around “expected” mean) and the square of bias (divergence of “expected” mean from true mean). This quantity is called “mean squared error”. The methodological results will be illustrated by examples.

Focus

The main focus lies on the methodologies, which, besides data of concentrations observed discretely in time, additionally use quasi-continuously recorded data of other variates, namely the flow. For that situation, statistical models are developed and the load derived and estimated according to existing data. Hereby it is seen that all model based estimation formulae can be described as standard sampling formulae plus some additional terms which stem from comparison of some measurements (i.?e. mean) for quasi-continuous and discrete samples. This way a “continuity-correction” is performed on the standard formulae for the sampling case. This method is called “continuity-based” load determination.

Results

A surprising result is that no complicated mathematical-statistical models are necessary to determine the load. A simple linear concentration- or load-flow-model is sufficient. Additional variates lead, most of the time, to a larger mean squared error in load estimation, even when it is well known that they cannot detoriate the model fit. Only models which describe the concentration extraordinarily precise, near perfection, result in a smaller error.

Implications

It is enough to use one of the given formulae with some “continuity correction” to calculate a load. That can be done without using any software.     

Variation along the shy–bold continuum in extremophile fishes (<Emphasis Type="BoldItalic">Poecilia mexicana</Emphasis>, <Emphasis Type="BoldItalic">Poecilia sulphuraria</Emphasis>)

One potential trade-off that bold individuals face is between increased predation risks and gains in resources. Individuals experiencing high predation and hungry individuals (or individuals with low body condition) are predicted to show increased boldness. We examined one behavioral trait previously reported to be associated with boldness (the time individual fish needed to emerge from shelter) in various populations of mollies (Poecilia spp.). Our study system included several southern Mexican surface streams with high piscine predation and high food availability, sulfidic surface streams with high avian predation, in which the inhabiting fish show reduced body condition, and a sulfidic cave, where predation and body condition are low. Our comparison revealed very short times to emerge from the start box in populations from non-sulfidic streams. In sulfidic habitats (whether surface or cave), it took individual Poecilia mexicana considerably longer to emerge from the start box, and the same difference was also found in an independent comparison between P. mexicana and the closely related, highly sulfide-adapted Poecilia sulphuraria. Fish reared under common garden conditions (in the absence of predators and hydrogen sulfide) showed intermediate boldness scores to the extremes observed in the field. Our data thus indicate that (a) boldness is shaped by environmental conditions/experiential effects, but is not heritable, (b) predation affects boldness in the predicted direction, but (c) low body condition leads to reduced boldness. Extremophile Poecilia spp. spend most of their time surfacing to survive under sulfidic and hypoxic conditions, which exposes them to increased levels of predations, but the fish forage on the bottom. Hence, in this system, increased boldness does not increase foraging success. We argue that energy limitation favors reducing energetically costly behaviors, and exploring novel environments may be just one of them.     

Grundwassergefährdung durch Holzschutzmittel

Goal and Background

As a consequence of the implementation of EU Directive 98/8/EC into national law in June 2002, all biocidal products will be subjected to an authorization procedure. Condition for issue of an authorization is that the product or its residues do not exert unacceptable effects on human and animal health or on surface water and groundwater. Hence, among other issues, impact of wood preservatives on groundwater is to be assessed. Focus is particularly on impregnating plants with open-air storage sites for treated wood.

Methods

Based on already in-use versions of the leaching model PELMO, an advanced version (MC-PELMO 3.0) was developed with a specific focus on estimating groundwater contamination under storage sites at wood preserving facilities in Germany. The model processes twenty-two different leaching scenarios that were derived from twelve characteristic soil profiles representing pedological regions in Germany along with recorded meteorological data from nine weather stations. These data are related to geographic distribution of industrial wood preserving activity. The model calculates statistic probabilities of concentrations of wood preservatives in seepage water beneath timber storage sites of regions to be selected by the user.

Results and Discussion

The reports provided by MC-PELMO 3.0 include mean average concentrations, 55 to 99 percentiles, and single maximum concentrations for each of the scenarios. the results can be related to the total area of Germany, its forest area or to the density of preversation activity in various regions. Beside concentrations of the parent compounds, those of degradation products may be calculated for the seepage water.

Conclusion

The described model is a particularly useful tool for comparative assertion of various wood preservative products under aspects of the exposure of groundwater resources. Comparative assertion is a new element within EU-chemicals policy, for the first time materialized in the biocidal products directive 98/8/EC. Furthermore, the results of model calculations identify vulnerable regions in Germany for which appropriate risk management measures have to be taken in order to protect groundwater from contamination.     

Umweltdatenbanken bei STN International — ihre Nutzung in der Praxis

Der Beitrag umfa?t eine übersicht über die Entwicklung wesentlicher Segmente des in Deutschland und international zug?nglichen Angebots an Umweltdatenbanken. Anschlie?end werden wichtige Umweltdatenbanken im Angebot von STN International dargestellt. Anhand ausgew?hlter Beispiele aus der Recherchepraxis werden schlie?lich Ablauf (Stufen der Vorbereitung, Durchführung und Nachbereitung) sowie Ergebnisse der Online-Recherche in wichtigen STN-Umweltdatenbanken dargestellt.     

A Special Vegetation Index for the Weed Detection in Sensor Based Precision Agriculture

Many technologies in precision agriculture (PA) require image analysis and image- processing with weed and background differentiations. The detection of weeds on mulched cropland is one important image-processing task for sensor based precision herbicide applications. The article introduces a special vegetation index, the Difference Index with Red Threshold (DIRT), for the weed detection on mulched croplands. Experimental investigations in weed detection on mulched areas point out that the DIRT performs better than the Normalized Difference Vegetation Index (NDVI). The result of the evaluation with four different decision criteria indicate, that the new DIRT gives the highest reliability in weed/background differentiation on mulched areas. While using the same spectral bands (infrared and red) as the NDVI, the new DIRT is more suitable for weed detection than the other vegetation indices and requires only a small amount of additional calculation power. The new vegetation index DIRT was tested on mulched areas during automatic ratings with a special weed camera system. The test results compare the new DIRT and three other decision criteria: the difference between infrared and red intensity (Diff), the soil-adjusted quotient between infrared and red intensity (Quotient) and the NDVI. The decision criteria were compared with the definition of a worse case decision quality parameter Q, suitable for mulched croplands. Although this new index DIRT needs further testing, the index seems to be a good decision criterion for the weed detection on mulched areas and should also be useful for other image processing applications in precision agriculture. The weed detection hardware and the PC program for the weed image processing were developed with funds from the German Federal Ministry of Education and Research (BMBF).     

Effects of humidity and filter material on diffusive sampling of isocyanates using reagent-coated filters

Diffusive sampling of methyl isocyanate (MIC) on 4-nitro-7-piperazinobenzo-2-oxa-1,3-diazole (NBDPZ)-coated glass fibre (GF) filters is strongly affected by high relative humidity (RH) conditions. It is shown that the humidity interference is a physical phenomenon, based on displacement of reagent from the filter surface. In this paper, this drawback has been overcome by changing the filter material to the less polar polystyrene divinyl benzene (SDB). A series of experiments was performed to compare the analyte uptake on the two filter materials for different sampling periods and analyte concentrations at both low and high RH conditions. Additionally, the materials were investigated as well for passive sampling of ethyl (EIC) and phenyl isocyanate (PhIC) with NBDPZ and 1-(2-methoxyphenyl) piperazine (2-MP) as an alternative derivatising agent. Using 2-MP, the mean GF/SDB response ratios were determined to be 1.02 for MIC (RSD: 6.1%) and 1.03 for EIC (RSD: 6.8%), whereas PhIC could only be determined on SDB filters. Using NBDPZ as reagent, the negative influence of high humidity disappeared when SDB filters were used instead of GF filters. Even at low RH conditions, sampling with SDB material generally resulted in a higher analyte uptake than with GF filters. The GF/SDB response ratios were independent of sampling time or analyte concentration and were determined to be 0.70 (RSD: 4.7%) for MIC, 0.84 (RSD: 4.5%) for EIC and 0.95 (RSD 5.4%) for PhIC, meaning that the NBDPZ diffusive sampler based on SDB can be used at all humidity conditions without any restrictions.     

Erprobung und Erfolgskontrolle eines Phytoremediationsverfahrens zur Sanierung Sprengstoff-kontaminierter Böden

The final article of a series of three evaluates the in situ-remediation of TNT(trinitrotoluene)-contaminated soil from ‘Werk Tanne’. The multidisciplinary approach allows a differentiated assessment. Grading with large-scale machinery leads to a depletion of TNT for almost 90% within the first 6 months, while ADNT(amino-dinitrotoluene)-content decreases more or less steadily over 1,5 years. Grading reduces the heterogenous distribution of the contamination only slightly. Results from field-monitoring and biotest-battery indicate residual toxicities of ecotoxicological relevance and a reduced capacity for biological regeneration, in comparison with the uncontamined site. Mycorrhized plants safe-guard the site and improve the soilecological conditions. Their role in reducing lower level residual toxicity requires further investigation. There is need for future research (1) on the dynamics and mechanisms of the initial decrease of TNT followed by stagnation, (2) on the fate of the primary metabolites, (3) on long-term effects of the phytoremediation, and (4) on the establishment of the complex monitoring for routine work.     

Application of QSARS to predict potential aquatic toxicities of organochlorine pesticides∗

On the basis of physico‐chemical data, such as water solubility and vapour pressure as well as acute toxicity tests we developed an ecotoxicological model for preliminary hazard assessment. By use of the reciprocal product from log H and LC₅₀ we developed a suitable ranking system that allows us to predict potential damage to aquatic organisms through pesticides.