Normalisation models for accounting for fat content in stable isotope measurements in salmonid muscle tissue

Stable isotope analysis is increasingly used in ecological studies. Because lipid content influences δ¹³C, lipids should be removed from lipid-rich samples before δ¹³C analysis. To account for differences in δ¹³C arising from differences in lipid content, relationships between lipid content, C:N ratio and Δδ¹³C with lipid removal can be used to normalise lipid content to uniform levels. We investigate these relationships for salmonid muscle and evaluate the suitability of previously published normalisation equations for these fish. Salmonids with a wide range of condition (muscle lipid content = 3–35% of dry weight) were considered. There were no consistent relationships between lipid content or C:N ratio and Δδ¹⁵N. There were linear relationships between C:N ratio and lipid content (L = −16.53 + 6.27 × C:N); C:N ratio and Δδ¹³C (Δδ¹³C = −1.87 + 0.65 × C:N); and lipid content and Δδ¹³C (Δδ¹³C = 0.01 + 0.10 × L), which should be used on salmonid stable isotope studies.     

Landscape context and scale differentially impact coffee leaf rust, coffee berry borer, and coffee root-knot nematodes

Crop pest and disease incidences at plot scale vary as a result of landscape effects. Two main effects can be distinguished. First, landscape context provides habitats of variable quality for pests, pathogens, and beneficial and vector organisms. Second, the movements of these organisms are dependent on the connectivity status of the landscape. Most of the studies focus on indirect effects of landscape context on pest abundance through their predators and parasitoids, and only a few on direct effects on pests and pathogens. Here we studied three coffee pests and pathogens, with limited or no pressure from host-specific natural enemies, and with widely varying life histories, to test their relationships with landscape context: a fungus, Hemileia vastatrix, causal agent of coffee leaf rust; an insect, the coffee berry borer, Hypothenemus hampei (Coleoptera: Curculionidae); and root-knot nematodes, Meloidogyne spp. Their incidence was assessed in 29 coffee plots from Turrialba, Costa Rica. In addition, we characterized the landscape context around these coffee plots in 12 nested circular sectors ranging from 50 to 1500 m in radius. We then performed correlation analysis between proportions of different land uses at different scales and coffee pest and disease incidences. We obtained significant positive correlations, peaking at the 150 m radius, between coffee berry borer abundance and proportion of coffee in the landscape. We also found significant positive correlations between coffee leaf rust incidence and proportion of pasture, peaking at the 200 m radius. Even after accounting for plot level predictors of coffee leaf rust and coffee berry borer through covariance analysis, the significance of landscape structure was maintained. We hypothesized that connected coffee plots favored coffee berry borer movements and improved its survival. We also hypothesized that wind turbulence, produced by low-wind-resistance land uses such as pasture, favored removal of coffee leaf rust spore clusters from host surfaces, resulting in increased epidemics. In contrast, root-knot nematode population density was not correlated to landscape context, possibly because nematodes are almost immobile in the soil. We propose fragmenting coffee plots with forest corridors to control coffee berry borer movements between coffee plots without favoring coffee leaf rust dispersal.     

Soil C and N changes with afforestation of grasslands across gradients of precipitation and plantation age

Afforestation, the conversion of unforested lands to forests, is a tool for sequestering anthropogenic carbon dioxide into plant biomass. However, in addition to altering biomass, afforestation can have substantial effects on soil organic carbon (SOC) pools, some of which have much longer turnover times than plant biomass. An increasing body of evidence suggests that the effect of afforestation on SOC may depend on mean annual precipitation (MAP). The goal of this study was to test how labile and bulk pools of SOC and total soil nitrogen (TN) change with afforestation across a rainfall gradient of 600-1500 mm in the Rio de la Plata grasslands of Argentina and Uruguay. The sites were all former grasslands planted with Eucalyptus spp. Overall, we found that afforestation increased (up to 1012 kg C x ha(-1) x yr(-1)) or decreased (as much as 1294 kg C x ha(-1) x yr(-1)) SOC pools in this region and that these changes were significantly related to MAP. Drier sites gained, and wetter sites lost, SOC and TN (r2 = 0.59, P = 0.003; and r2 = 0.57, P = 0.004, respectively). Labile C and N in microbial biomass and extractable soil pools followed similar patterns to bulk SOC and TN. Interestingly, drier sites gained more SOC and TN as plantations aged, while losses reversed as plantations aged in wet sites, suggesting that plantation age in addition to precipitation is a critical driver of changes in soil organic matter with afforestation. This new evidence implies that longer intervals between harvests for plantations could improve SOC storage, ameliorating the negative trends found in humid sites. Our results suggest that the value of afforestation as a carbon sequestration tool should be considered in the context of precipitation and age of the forest stand.     

Human health impacts of exposure to metals through extreme consumption of fish from the Colombian Caribbean Sea

The health risks of metal exposure due to the high consumption of fish were assessed for a riverine population living on the Caribbean coast of Colombia. The concentrations of metals (Cd, Cr, Cu, Hg, Ni, Pb and Zn) in the edible tissues of fish were determined and used for risk assessment. The daily fish consumption of residents (n = 95) was as high as 283, 366 and 469 g/day in children (CH), women of childbearing age (WCHA) and the remaining population groups (RP), respectively. The estimation of the potential risk (HQ) indicated that there was no health risk from most of the metals, because they did not exceed their related reference doses, with values of HQ < 1. Although the concentrations of Pb and Hg were not particularly high in fish (<0.2 µg/g), their possible health effects for vulnerable groups are of great concern due to the extremely high fish intake. The Pb intake for all groups was higher than the lower confidence limit of the benchmark dose for nephrotoxicity and neurodevelopmental effects in children. The weekly intake of methylmercury was also elevated, with values approximately 3, 2 and 1.5 times the provisional tolerable weekly intake for CH, WCHA and RP, respectively. Moreover, higher Hg levels were found in top predators, whereas maximum levels for other metals were found in bottom-feeding fish. This study highlights that an accurate data of daily intake, a continuous monitoring of metals in fish and their related fish consumption advisories to protect subsistence fishing communities are recommended in a local and worldwide context.     

Volatile organic compounds of Acacia longifolia and their effects on germination and early growth of species from invaded habitats

Acacia longifolia, a highly invasive species that invades coastal ecosystems in Mediterranean areas, produces significant impacts at different scales. Abundant foliage and thick canopies create a dense atmosphere that led us to hypothesise that the release of volatile organic compounds (VOCs) could play a role in the reduction of biodiversity observed in invaded areas. Therefore, we suggested that VOCs emitted by A. longifolia could exert inhibitory effects on physiological and biochemical parameters of native species. Using glass chamber bioassays, we evaluated the effect of aerial contact between VOCs from different plant parts of A. longifolia material and some native species. Volatile chemical composition was further analysed using GC-MS. Our results indicated that VOCs produced a notably reduction of seed germination. Furthermore, volatiles from leaves and flowers significantly decreased root length, shoot length and biomass for all species. Proline and malondialdehyde content did not significantly increase after contact with VOCs. Finally, chemical profile of VOCs from flowers, leaves and litter was significantly different, both qualitatively and quantitatively. As far as we know, our results constitute the first evidence of phytotoxicity induced by VOCs from A. longifolia, suggesting that flowers and leaves could influence its surrounding environment through VOCs release.     

Recent shoreline evolution and beach erosion along the central Adriatic coast of Italy: the case of Molise region

A study on the modern dynamics and shoreline changes from 1954 to 2014 of the Molise coast (central Adriatic Sea) has been carried out. Short to long-term shoreline changes and associated surface area variations have been assessed in GIS environment for the study coast, subdivided in nine coastal segments (S1-S9), by using 100-m regularly spaced transects. In addition, the possible influence of natural and anthropogenic factors, especially of climatic variability and engineered shoreline defense structures, has been investigated. The Molise coast has experienced notable long-term erosion (period 1054-2014) that caused an overall coastal land loss of approximately 940,000 m². Erosion was, yet, limited to coastal segments S1 and S7, nearest to the mouths of major rivers, namely Trigno and Biferno, while the major part of the study coast has remained essentially stable or even advanced. Increased shoreline protection by defense structures has generally favoured shoreline stability and frequently generated shoreline advance, except for segments S1 and S7. Observed differences in shoreline change rates over time at the decadal to interannual scale, have not find a response in the analysis of available data on meteo-marine conditions of the Molise coast and climate variability indices, pointing out the need to improve knowledge on meteomarine conditions and on climatic variability forcing of the study area. From 2004 to 2014, the Molise shoreline remained essentially stable. Nonetheless, most recent shoreline changes (period 2011-2014) and modern shoreline dynamics indicate that erosion has become more widespread, involving at least part of segments S2-S3 and S8-S9, located south of the river mouth segments. The localized long-term shoreline retreat and most recent shoreline erosion appear to be primarily related to channel adjustments of the Biferno and Trigno rivers that occurred since the 1950s under the control of human interventions on the rivers, especially the construction respectively of a dam and a check dam along their lower courses, that trap of most of their solid load, affecting so adversely the sediment budget of the river mouths areas and adjacent beaches. Overall data acquired on the recent shoreline evolution and modern shoreline dynamics of the Molise coast and on related causal factors provide a good basic knowledge for regional coastal management purposes, and for further scientific purposes. Particularly, they suggest the opportunity to deepen a number of aspects such as the relationship between the coast and river catchments feeding it, the possible influences on the Molise shoreline dynamics of the neighbouring coasts, the efficiency/obsolescence of defense structures and the present-day vulnerability to coastal erosion of the Molise coast.     

The assessment of the coastal vulnerability and exposure degree of Gran Canaria Island (Spain) with a focus on the coastal risk of Las Canteras Beach in Las Palmas de Gran Canaria

The Coastal Vulnerability and Exposure Degree (CVED) of the Gran Canaria Island and the coastal risk of Playa de Las Canteras (Las Palmas de G.C.) have been assessed by means of a GIS analysis. The evaluation of coastal vulnerability (H) has been performed by using two different levels of analysis: the first one regarding the entire Island (Coastal Vulnerability Index method - CVI), the second one regarding specifically Las Canteras Beach, selected for its socio-economic importance (Coastal Vulnerability Assessment method - CVA). The application of the CVI method, based on geologic-geomorphologic and meteomarine data easily available, has allowed the regional scale assessment of coastal vulnerability (H) along the Gran Canaria coastline and, therefore, the individuation of more critical coast stretches deserving further analysis. The application of the CVA method, based on more specific morphologic-sedimentary beach features that allow to consider both the beach retreat due to storm surge and the coastal inundation due to run-up on the beach, has provided a large scale detail on the coastal vulnerability of Las Canteras Beach. Socio-economic and damage indexes have been determined for the 15 coastal municipalities included in the study area and, by means of the resulting matrix product, the degree of exposure (E_x) along the Gran Canaria coast has been assessed. Finally, the combination of coastal vulnerability and exposure levels has allowed to obtain the Coastal Vulnerability and Exposure Degree (CVED) for the entire Island and the risk levels that characterize specifically Las Canteras Beach. Major results in terms of CVED highlight prevailing low vulnerability and exposure levels along the western coast, and overall high vulnerability and exposure levels along the eastern coast, from Las Palmas de G.C. to San Bartolomé de Tirajana. The focus made on Playa de Las Canteras has allowed to identify the areas characterized by medium and high risk levels that represent approximately one third (940 m) of the entire beach and are located in its central part. The used two-level analysis approach has proved its efficiency by highlighting the degree of coastal vulnerability along the study coast and, especially, more critical coast stretches (CVI method) such as the Playa de Las Canteras that can be successfully analysed with the CVA approach allowing for a large-scale assessment of risk aspects, essential for a correct definition of priority management strategies. Results obtained with the present study, along with the awareness of the increasing phenomena of coastal erosion and marine flooding arising on the mid-long term due to the effects of global climate change, highlight the need for the competent public administrations of Gran Canaria to develop a strategic approach to coastal management and sustainable development that considers as a whole socio-economic values and natural resources, coastal vulnerability and exposure degree, and risk aspects.     

Bayesian nonparametric inference for the overlap of daily animal activity patterns

The study of the interaction among species is an active area of research in Ecology. In particular, it is of interest to evaluate the overlap of their ecological niches. Temporal activity is one of the niche’s axes most commonly used to explore ecological segregation among animal species, and many contributions focus on the overlap of this variable. Once the information of the temporal activity is obtained in the wild, the data is treated as a random sample. There exist different methods to estimate the overlap. Specifically, in the case of two species, one possibility is to estimate the density of the temporal activity of each species and then evaluate the overlap between these density functions. This leads naturally to the analysis of circular data. Most of the procedures currently in use impose some rather restrictive assumptions on the probabilistic models used to describe the phenomena, and only provide approximate measures of the uncertainty involved in the process. In this article, we propose a Bayesian nonparametric approach which incorporates a well-defined noninformative prior. We take advantage of the data structure to define such a prior in terms of the predictive distribution. To the best of our knowledge, this is a novel approach. Our procedure is compared with a well-known method using simulated data, and applied to the analysis of real camera-trap data concerning two mammalian species from the El Triunfo biosphere reserve (Chiapas, Mexico).     

Shell shape variation in populations of Mytilus chilensis (Hupe 1854) from southern Chile: a geometric morphometric approach

The pattern of shell shape variation in populations of the mussel, Mytilus chilensis (Hupe 1854) from Southern Chile was analyzed as a function of sample origin (cultivated vs. wild) and latitude, using standard tools of geometric morphometrics for landmark data. Additionally, posterior adductor muscle index (PAMI), Freeman condition index and shell thickness were measured in each sample. Highly significant differences in shell shape components were found among mussel populations. These differences are related to the origin of samples (expansion of the posterior adductor muscle scar, elongation of the lateral ligament and of the ventral umbo position in non-cultivated samples) and to latitude (more elongated shells and more extended posterior adductor muscle scar in most southern samples when compared with the northernmost ones). PAMI and shell thickness were statistically higher in wild population, and Freeman condition index was higher in cultivated shells. It is suggested that in wild populations of M. chilensis, the mussels may face higher predator pressures and other environmental stress factors. Consequently, individuals may be using higher energy fraction to reinforce shells and to promote adductor muscle growth at the expense of somatic growth. In contrast, individuals found in calm aquaculture environments are relatively protected from predators and use most of their assimilated energy in somatic growth. In turn, this growth depends on changes that covariate with shell morphology.     

Alimentary niche partitioning in the Galapagos sea lion, Zalophus wollebaeki

Sea lions are generally considered opportunistic feeders. However, studies from different areas suggest their diet consists mostly of four to five types of prey. Previous studies in Galapagos sea lions have identified at least three feeding strategies for this species, suggesting diversification of their diet. Diet diversification is favored in organisms with relatively high trophic position and subject to high intra-specific and low inter-specific competition. Zalophus wollebaeki meet these criteria as the only pinniped on San Cristobal Island, where three sea lion rookeries are located within 11 km: a distance considerably shorter than their 41 km foraging range. To measure the degree of diet diversification, we used scats and stable isotope analyses. A total of 270 scat samples from lactating females and 142 fur samples from sea lion pups were collected during the breeding season 2006. The scat analysis identified distinct diets among rookeries, with minimal trophic overlap (Cλ = 0.19), a trophic level TL = 4.5 (secondary–tertiary carnivore), and trophic breadth of a specialist predator (B _i  = 0.37). The mean δ¹⁵N and δ¹³C values were 13.07 ± 0.52 and −16.34 ± 0.37, respectively. No significant difference was found in the δ¹⁵N values from the sea lion rookeries, but differences were found inter- and intra-population in δ¹³C values for pups from different groups (ANOVA P < 0.05). Our results indicate that diet diversification is present in the Galapagos sea lion and may play important role to the survival of the species in a habitat where pinniped populations are limited.