Regional status assessment of stony corals in the US Virgin Islands

States may protect coral reefs using biological water quality standards outlined by the Clean Water Act. This requires biological assessments with indicators sensitive to human disturbance and regional, probability-based survey designs. Stony coral condition was characterized on a regional scale for the first time in the nearshore waters of the US Virgin Islands (USVI). Coral composition, abundance, size, and health were assessed at 66 stations in the St. Croix region in fall 2007 and at 63 stations in the St. Thomas and St. John region in winter 2009. Indicators were chosen for their sensitivity to human disturbance. Both surveys were probability-based (random) designs with station locations preselected from areas covered by hardbottom and coral reef substrate. Taxa richness was as high as 21 species but more than half the area of both regions exhibited taxa richness of <10 species in the 25 m² transect area. Coral density was as high as 5 colonies m^?2 but more than half the area of both regions had <2 colonies m^?2. Both regions showed similar dominant species based on frequency of occurrence and relative abundance. Because of large colony sizes, Montastrea annularis provided more total surface area and live surface area than more abundant species. The surveys establish baseline regional conditions and provide a foundation for long-term regional monitoring envisioned by the USVI Department of Planning and Natural Resources. The probabilistic sampling design assures the data can be used in Clean Water Act reporting.     

Lethal levels of hypoxia for gulf coast estuarine animals

There is increasing concern about eutrophication and subsequent hypoxia problems in estuaries. The US Environmental Protection Agency has developed Water Quality Criteria (WQC) for dissolved oxygen (DO) in saltwater for Cape Cod, MA to Cape Hatteras, NC but inadequate data exists for development of such criteria for other coastal geographic areas. We performed acute tests with two species of crustaceans and seven species of estuarine fishes native to the Gulf of Mexico to complement the data base for northeastern species. Flow-through tests were conducted for either 24- or 48-h at test temperatures from 24 to 28°C and at salinities from 20 to 31.5‰. Estimated 24-h LC50 values obtained for crustaceans ranged from 1.36 mg/l for adult pink shrimp to 1.56 mg/l for 10-day-old mysids. Similarly, estimated LC50 values for fish ranged from 1.34 mg/l in one of the three tests with pinfish to 2.22 mg/l in one of the two tests with scaled sardines. The majority of mortality attributable to low DO concentrations in our experiments usually occurred within the first 4 h of exposure. LC50 values for the species tested are below the WQC recommended protective limit of 2.3 mg/l for juvenile and adult animals.     

METHOD TO IDENTIFY EFFECTWE RIPARIAN BUFFER WIDTHS FOR ATLANTIC SALMON HABITAT PROTECTION1

ABSTRACT: Successful restoration of declining anadromous species is dependent upon effective riparian buffer zone management. Natural resource managers, policy developers and local conservation groups require science‐based information concerning the width at which a given buffer will be effective for its stated purpose. This paper summarizes a method developed in 1999 to determine effective riparian buffer widths for Atlantic salmon habitat protection as part of the Atlantic Salmon Conservation Plan for Seven Maine Rivers. A major assumption of the method is that no two buffers are alike with respect to their effectiveness and that various buffer characteristics dictate the required width for a given level of effectiveness. The method uses a predictive model that generates suggested riparian buffer widths as a function of specific, measurable buffer characteristics (such as slope, soil characteristics, and plant community structure and density) that affect buffer function. The method utilizes a variable‐width, two‐zone approach and specifies land uses that are consistent with desired buffer function within the two zones.     

A comparison of taxon co-occurrence patterns for macro- and microorganisms

We examine co-occurrence patterns of microorganisms to evaluate community assembly "rules". We use methods previously applied to macroorganisms, both to evaluate their applicability to microorganisms and to allow comparison of co-occurrence patterns observed in microorganisms to those found in macroorganisms. We use a null model analysis of 124 incidence matrices from microbial communities, including bacteria, archaea, fungi, and algae, and we compare these results to previously published findings from a meta-analysis of almost 100 macroorganism data sets. We show that assemblages of microorganisms demonstrate nonrandom patterns of co-occurrence that are broadly similar to those found in assemblages of macroorganisms. These results suggest that some taxon co-occurrence patterns may be general characteristics of communities of organisms from all domains of life. We also find that co-occurrence in microbial communities does not vary among taxonomic groups or habitat types. However, we find that the degree of co-occurrence does vary among studies that use different methods to survey microbial communities. Finally, we discuss the potential effects of the undersampling of microbial communities on our results, as well as processes that may contribute to nonrandom patterns of co-occurrence in both macrobial and microbial communities such as competition, habitat filtering, historical effects, and neutral processes.     

Precipitation-driven carbon balance controls survivorship of desert biocrust mosses

Precipitation patterns including the magnitude, timing, and seasonality of rainfall are predicted to undergo substantial alterations in arid regions in the future, and desert organisms may be more responsive to such changes than to shifts in only mean annual rainfall. Soil biocrust communities (consisting of cyanobacteria, lichen, and mosses) are ubiquitous to desert ecosystems, play an array of ecological roles, and display a strong sensitivity to environmental changes. Crust mosses are particularly responsive to changes in precipitation and exhibit rapid declines in biomass and mortality following the addition of small rainfall events. Further, loss of the moss component in biocrusts leads to declines in crust structure and function. In this study, we sought to understand the physiological responses of the widespread and often dominant biocrust moss Syntrichia caninervis to alterations in rainfall. Moss samples were collected during all four seasons and exposed to two rainfall event sizes and three desiccation period (DP) lengths. A carbon balance approach based on single precipitation events was used to define the carbon gain or loss during a particular hydration period. Rainfall event size was the strongest predictor of carbon balance, and the largest carbon gains were associated with the largest precipitation events. In contrast, small precipitation events resulted in carbon deficits for S. caninervis. Increasing the length of the DP prior to an event resulted in reductions in carbon balance, probably because of the increased energetic cost of hydration following more intense bouts of desiccation. The season of collection (i.e., physiological status of the moss) modulated these responses, and the effects of DP and rainfall on carbon balance were different in magnitude (and often in sign) for different seasons. In particular, S. caninervis displayed higher carbon balances in the winter than in the summer, even for events of identical size. Overall, our results suggest that annual carbon balance and survivorship in biocrust mosses are largely driven by precipitation, and because of the role mosses play in biocrusts, changes in intra-annual precipitation patterns can have implications for hydrology, soil stability, and nutrient cycling in dryland systems.     

Carbon sequestration in dryland soils and plant residue as influenced by tillage and crop rotation

Long-term use of conventional tillage and wheat (Triticum aestivum L.)-fallow systems in the northern Great Plains have resulted in low soil organic carbon (SOC) levels. We examined the effects of two tillage practices [conventional till (CT) and no-till (NT)], five crop rotations [continuous spring wheat (CW), spring wheat-fallow (W-F), spring wheat-lentil (Lens culinaris Medic.) (W-L), spring wheat-spring wheat-fallow (W-W-F), and spring wheat-pea (Pisum sativum L.)-fallow (W-P-F)], and Conservation Reserve Program (CRP) planting on plant C input, SOC, and particulate organic carbon (POC). A field experiment was conducted in a mixture of Scobey clay loam (fine-loamy, mixed, Aridic Argiborolls) and Kevin clay loam (fine, montmorillonitic, Aridic Argiborolls) from 1998 to 2003 in Havre, MT. Total plant biomass returned to the soil from 1998 to 2003 was greater in CW (15.5 Mg ha(-1)) than in other rotations. Residue cover, amount, and C content in 2004 were 33 to 86% greater in NT than in CT and greater in CRP than in crop rotations. Residue amount (2.47 Mg ha(-1)) and C content (0.96 Mg ha(-1)) were greater in NT with CW than in other treatments, except in CT with CRP and W-F and in NT with CRP and W-W-F. The SOC at the 0- to 5-cm depth was 23% greater in NT (6.4 Mg ha(-1)) than in CT. The POC was not influenced by tillage and crop rotation, but POC to SOC ratio at the 0- to 20-cm depth was greater in NT with W-L (369 g kg(-1) SOC) than in CT with CW, W-F, and W-L. From 1998 to 2003, SOC at the 0- to 20-cm depth decreased by 4% in CT but increased by 3% in NT. Carbon can be sequestered in dryland soils and plant residue in areas previously under CRP using reduced tillage and increased cropping intensity, such as NT with CW, compared with traditional practice, such as CT with W-F system, and the content can be similar to that in CRP planting.     

Characterizing Coral Condition Using Estimates of Three-dimensional Colony Surface Area

Coral reefs provide shoreline protection, biological diversity, fishery harvests, and tourism, all values that stem from the physically-complex coral infrastructure. Stony corals (scleractinians) construct and maintain the reef through deposition of calcium carbonate. Therefore, assessment of coral reefs requires at least some measurement endpoints that reflect the biological and physical condition of stony corals. Most monitoring programs portray coral quantity as live coral cover, which is the two-dimensional proportion of coral surface to sea floor viewed from above (planar view). The absence of the third dimension, however, limits our ability to characterize coral reef value, physiology, health and sustainability. A three-dimensional (3D) approach more realistically characterizes coral structure available as community habitat and, when combined with estimates of live coral tissue, quantifies the amount of living coral available for photosynthesis, growth and reproduction. A rapid coral survey procedure that coupled 3D coral quantification with more traditional survey measurements was developed and tested in the field. The survey procedure relied on only three underwater observations – species identification, colony size, and proportion of live tissue – made on each colony in the transect. These observations generated a variety of metrics, including several based on 3D colony surface area, that are relevant to reef management.     

The contribution of advective fluxes to net ecosystem exchange in a high-elevation, subalpine forest

The eddy covariance technique, which is used in the determination of net ecosystem CO2 exchange (NEE), is subject to significant errors when advection that carries CO2 in the mean flow is ignored. We measured horizontal and vertical advective CO2 fluxes at the Niwot Ridge AmeriFlux site (Colorado, USA) using a measurement approach consisting of multiple towers. We observed relatively high rates of both horizontal (F(hadv)) and vertical (F(vadv)) advective fluxes at low surface friction velocities (u(*)) which were associated with downslope katabatic flows. We observed that F(hadv) was confined to a relatively thin layer (0-6 m thick) of subcanopy air that flowed beneath the eddy covariance sensors principally at night, carrying with it respired CO2 from the soil and lower parts of the canopy. The observed F(vadv) came from above the canopy and was presumably due to the convergence of drainage flows at the tower site. The magnitudes of both F(hadv) and F(vadv) were similar, of opposite sign, and increased with decreasing u(*), meaning that they most affected estimates of the total CO2 flux on calm nights with low wind speeds. The mathematical sign, temporal variation and dependence on u(*) of both F(hadv) and F(vadv) were determined by the unique terrain of the Niwot Ridge site. Therefore, the patterns we observed may not be broadly applicable to other sites. We evaluated the influence of advection on the cumulative annual and monthly estimates of the total CO2 flux (F(c)), which is often used as an estimate of NEE, over six years using the dependence of F(hadv) and F(vadv) on u(*). When the sum of F(hadv) and F(vadv) was used to correct monthly F(c), we observed values that were different from the monthly F(c) calculated using the traditional u(*)-filter correction by--16 to 20 g C x m(-2) x mo(-1); the mean percentage difference in monthly Fc for these two methods over the six-year period was 10%. When the sum of F(hadv) and F(vadv) was used to correct annual Fc, we observed a 65% difference compared to the traditional u(*)-filter approach. Thus, the errors to the local CO2 budget, when F(hadv) and F(vadv) are ignored, can become large when compounded in cumulative fashion over long time intervals. We conclude that the "micrometeorological" (using observations of F(hadv) and F(vadv)) and "biological" (using the u(*) filter and temperature vs. F(c) relationship) corrections differ on the basis of fundamental mechanistic grounds. The micrometeorological correction is based on aerodynamic mechanisms and shows no correlation to drivers of biological activity. Conversely, the biological correction is based on climatic responses of organisms and has no physical connection to aerodynamic processes. In those cases where they impose corrections of similar magnitude on the cumulative F(c) sum, the result is due to a serendipitous similarity in scale but has no clear mechanistic explanation.     

Comparison of PCE and TCE disappearance in heated volatile organic analysis vials and flame-sealed ampules

The rates of hydrolysis reported for tetrachloroethylene (PCE) and trichloroethylene (TCE) at elevated temperatures range over two orders-of-magnitude, where some of the variability may be due to the presence of a gas phase. Recent studies suggest that volatile organic analysis (VOA) vials provide a low-cost and readily available zero headspace system for measuring aqueous-phase hydrolysis rates. This work involved measuring rates of PCE and TCE disappearance and the corresponding appearance of dechlorination products in water-filled VOA vials and flame-sealed ampules incubated at 21 and 55 °C for up to 95.5 days. While PCE and TCE concentrations readily decreased in the VOA vials to yield first-order half lives of 11.2 days for PCE and 21.1 days for TCE at 55 °C, concentrations of anticipated dechlorination products, including chloride, remained constant or were not detected. The rate of PCE disappearance was 34 times faster in VOA vials at 55 °C compared to values obtained with flame-sealed ampules containing PCE-contaminated water. In addition, the concentration of TCE increased slightly in flame-sealed ampules incubated at 55 °C, while a decrease in TCE levels was observed in the VOA vials. The observed losses of PCE and TCE in the VOA vials were attributed to diffusion and sorption in the septa, rather than to dechlorination. These findings demonstrate that VOA vials are not suitable for measuring rates of volatile organic compound hydrolysis at elevated temperatures.