Part I : <Emphasis Type="Italic">a priori</Emphasis> study of erosion and deposition with large eddy simulation of turbulent flow over multiple 2D sandy Gaussian hills

The micro-scale prediction of sand trapping or take-off over hilly terrains is a crucial issue in semi-arid regions for soil depletion. In this context, large eddy simulations around one or several hills are performed in order to provide statistical parameters to characterize the flow at micro-scales and provide data for mesoscale modelling. We focus on the determination of recirculation zones since they play an important role in solid particle erosion or entrapment. A new wall modeling adapted from Huang et al. (J Turbul 17:1–24, 2016) for rough boundary layers is found to improve the prediction of the recirculation zone length downstream of an isolated hill and is used for all the numerical cases presented here. A geometrical parameterization of the recirculation zones is proposed. When the recirculation region is assumed to have an ellipsoidal shape, the total surface of the recirculation can be obtained from this new parameterization and easily extrapolated to more general dune configurations. Numerical results are compared with experiments performed in our laboratory (Simoëns et al. in Procedia IUTAM 17:110–118, 2015) and good agreement is achieved. We explore general aerodynamic cases deduced from the urban canopy scheme of Oke (Energy Build 11:103–113, 1988). In this scheme the momentum and mass exchange between the upper layer and the space between hills is sorted according to the streamwise hill spacing within three basic cases of skimming, wake or isolated flow. The study of the recirculation zones, the mean velocity and Reynolds stress profiles around an isolated or two consecutive hills with different distances shows that the double hill configuration with 3H separation behaves as much as a whole to the upcoming flow. The vortex formed between the crests does not strongly affect the overall evolution of the outer flow. By an a priori prediction of the preferential zones of erosion and accumulation of fictive particles, it is shown that isolated dunes present more deposition and less erosion than two-hill configurations. The results presented in this study will be discussed in the presence of Lagrangian transport of sand particles above 2D Gaussian hills in future work.     

A high resolution measurement of the morning ABL transition using distributed temperature sensing and an unmanned aircraft system

We used an unmanned aircraft system (UAS) to lift and suspend distributed temperature sensing (DTS) technologies to observe the onset of an early morning transition from stable to unstably stratified atmospheric conditions. DTS employs a fiber optic cable interrogated by laser light, and uses the temperature dependent Raman scattering phenomenon and the speed of light to obtain a discrete spatial measurement of the temperature along the cable. The UAS/DTS combination yielded observations of temperature in the lower atmosphere with high resolution (1 s and 0.1 m) and extent (85 m) that revealed the detailed processes that occurred over a single morning transition. The experimental site was selected on the basis of previous experiments and long term data records; which indicate that diurnal boundary layer development and wind sectors are predictable and consistent. The data showed a complex interplay of motions that occur during the morning transition that resulted in propagation and growth of unstable wave modes. We observed a rapid cooling of the air aloft (layer above the strong vertical temperature gradient) layer directly after sunrise due to vertical mixing followed by an erosion of the strong gradient at the stable layer top. Midway through the transition, unstable wave modes were observed that are consistent with Kelvin–Helmholtz motions. These motions became amplified through the later stages of the transition.     

Pollution indices as useful tools for the comprehensive evaluation of the degree of soil contamination–A review

The paper provides a complex, critical assessment of heavy metal soil pollution using different indices. Pollution indices are widely considered a useful tool for the comprehensive evaluation of the degree of contamination. Moreover, they can have a great importance in the assessment of soil quality and the prediction of future ecosystem sustainability, especially in the case of farmlands. Eighteen indices previously described by several authors (I_geo, PI, EF, C_f, PI_sum, PI_Nemerow, PLI, PI_ave, PI_Vector, PIN, MEC, CSI, MERMQ, C_deg, RI, mCd and ExF) as well as the newly published Biogeochemical Index (BGI) were compared. The content, as determined by other authors, of the most widely investigated heavy metals (Cd, Pb and Zn) in farmland, forest and urban soils was used as a database for the calculation of all of the presented indices, and this shows, based on statistical methods, the similarities and differences between them. The indices were initially divided into two groups: individual and complex. In order to achieve a more precise classification, our study attempted to further split indices based on their purpose and method of calculation. The strengths and weaknesses of each index were assessed; in addition, a comprehensive method for pollution index choice is presented, in order to best interpret pollution in different soils (farmland, forest and urban). This critical review also contains an evaluation of various geochemical backgrounds (GBs) used in heavy metal soil pollution assessments. The authors propose a comprehensive method in order to assess soil quality, based on the application of local and reference GB.     

Effects of nanoparticles on Daphnia magna population dynamics

Spherical TiO₂ nanoparticles (npTiO₂) were prepared by controlled hydrolysis of tetraethoxy orthotitanate under a nitrogen atmosphere. ZnO nanoparticles (npZnO) were prepared using hydrothermal methods. The crystal structure, chemical, thermal and morphological properties of npZnO and npTiO₂ were characterised using Fourier Transform Infrared Spectrometer, enery-dispersive X-ray spectroscopy, X-ray diffraction, and scanning electron microscope techniques. The short- and long-term experiments were started with neonates taken from the same culture and laboratory condition. In the acute experiments, npTiO₂, npZnO, and cocktail concentrations were applied. 96h-LC₅₀ values were 1.8, 0.7, and 0.1?mg?L^?1, respectively (p?<?.05). For the chronic experiments, different npTiO₂ concentrations were performed. 21d-LC₅₀ value was 1.0?mgL^?1 (p?<?.05). Morphometry became progressively worse in concentrations of more than 1?mgL^?1 npTiO₂. Neonate and young individuals were more sensitive to death because of their low tolerance. This result was affected by population progeny and growth rates (p?<?.05). While control and 0.5?mgL^?1 npTiO₂ groups were determined as growing population, 1.5 and 2?mgL^?1 npTiO₂ groups had decreased population size as R₀ values. Consequently, the relationships between nanoparticle accumulation within Daphnia magna and its population structure and body morphometry for each concentration were important indicators. Its tolerance level to nanoparticles under laboratory conditions reflected its replacement and behaviour in the ecosystem.     

Unexpected behavior of Zn,Cd, Cu,and Pb in soils contaminated by ore processing after 70 years of burial

Environmental Chemistry Letters - Heavy metals in contaminated ore processing areas present a risk of contamination of waters and life. Therefore, the most mobile fractions of metals, which can be...     

Effects of different endogenous fungi on the mass loss and nutrient content of leaf litter of Cunninghamia lanceolata北大核心CSCD

To explore the role of endophytic fungi in the decomposition of litter, the endophytic fungi Penicillium sp. strain CG2 (A), Fusarium flavum strain AY13 (B), and Talaromyces strain AJ14 (C) of Cunninghamia lanceolata were added to experimental pots in different forms (mycelium, sterilized fermentation broth, single fungus, and mixed fungi), and a control treatment (CK) was set up (no fungi added). At 10, 30, 60, 90, and 120 days after litter decomposition, a study on the decomposition dynamics of C. lanceolata litter under different treatments was performed. The results showed that the rate of leaf mass loss was the highest in the sterilized fermentation broth treatment A after 120 days, and that there was a significant difference (P < 0.05) between the mycelium treatment AC and the control treatment after 60 days (23.97% higher than the control group). On day 60, the litter carbon content from the mycelium treatment A was significantly different from that of the control (P < 0.05), showing a 16.74% lower value, whereas the litter carbon content of the mycelium treatment B was 21.13% lower than that of the control after 90 days. The nitrogen content of the litters of most mycelium and sterilized fermentation broth treatments was increased compared to that of the control group; there was significant difference (P < 0.05) between the sterilized fermentation broth treatment A and the control (P < 0.05), with a 17.05% higher value than that of the control. Similar to nitrogen, the litter phosphorus content also increased; there was a statistically significant difference between the mycelium treatment A and the control group, with treatment A showing a 46.67% higher value than the control group. The potassium content was 28% lower than that of the control group under the sterilized fermentation broth treatment C, a result that was significantly different from that of the control group (P < 0.05). After treatment for 90 days, the ratio of carbon to nitrogen was the lowest under the treatments with the mycelium A and the mycelium B, with values 25.54% and 25.11% lower than that of the control group, respectively, and a statistically significant difference from that of the control group (P < 0.05). The ratio of carbon to phosphorus was the lowest under the treatment with mycelium A after 60 days, and the result was significantly different from that of the control (P < 0.05), with a 43.05% lower value than the control. Thus, the three endophytic fungi had different effects on the mass loss rate and nutrient content of the litter. The Penicillium sp. strain CG2 (A) had statistically significant effects on the mass loss and nutrient content of leaf litter, which was within the range of fungi fertilizer reference values for the breeding of C. lanceolata. © 2018 Science Press. All rights reserved.     

Effects of water velocity on bulk water quality and biofilm population structure in drinking water distribution systems北大核心CSCD

To study the effect of flow velocity on drinking water distribution systems, bulk water quality was monitored over 28 days, biomass was measured, and 16S rDNA was sequenced on the 28th day using a water distribution simulation system. The relationship between bulk water quality and biofilm was statistically analyzed. Flow velocity of 0.5 m/s yielded the most total organic carbon (TOC) (5.26 ± 0.17 mg/L) in the bulk water, the most bulk water bacteria (lg (n+1/mL-1) = 4.79 ± 0.02), the worst bulk water quality, and the most biofilm bacteria (lg (n+1/cm-2) = 5.48 ± 0.06). A Pearson correlation analysis showed the total number of biofilm bacteria was positively correlated with conductivity (R = 0.73, P < 0.01), turbidity (R = 0.87, P < 0.001), TOC (R = 0.94, P < 0.001), and total bacteria (R = 0.92, P < 0.001), and was negatively correlated with residual chlorine (R = -0.68, P < 0.05). Biofilm diversity was high under the low (0.1 m/s) and high (2.5 m/s) flow rates, but the bacterial diversity of biofilm was the lowest at the 0.5 m/s flow rate, in which Proteobacteria dominated the biofilm community structure. These results suggest that flow velocity affects bulk water quality and biofilm population structure, and water quality and biofilm population structure are interrelated, which provides the theoretical basis for research on biofilms in drinking water distribution systems. © 2018 Science Press. All rights reserved.     

Heterologous overexpression of Populus euphratica BAK1;1 gene enhanced resistance to Pst DC3000 in tobacco北大核心CSCD

BRI1-ASSOCIATED RECEPTORKINASE1(BAK1), a leucine-rich repeat (LRR) receptor protein kinase, plays a significant role in brassinosteroid (BR) signaling. Furthermore, it combines with other LRR-RLKs protein to initiate immune response in plants. The objective of this study was to (1) investigate the function of the Populus euphratica BAK1;1 gene in the resistance of transgenic tobacco to Pseudomonas syringae pv. tomato DC3000 (Pst DC3000) and (2) discuss the regulation pathway of PeBAK1;1 involved in the resistance to plant pathogen. We cloned the cDNA sequence of the P. euphratica PeBAK1;1 gene, constructed the pBI121-35S::PeBAK1;1 over-expression vector, and then transformed it into wild-type tobacco by Agrobacterium-mediated transformation to obtain PeBA K 1;1-overexpressing transgenic tobacco plants. The bioinformatic analysis showed that the PeBAK1;1 protein contained all the structural features of the plant SERK family. The phylogenetic tree showed that PeBAK1;1 has the highest sequence homology with PtBAK1. The gene expression profile results indicated that the expression of PeBAK1;1 in the root was higher than that in the leaf and stem. The wild-type tobacco plants showed an obvious susceptibility to Pst DC3000, whereas the transgenic plants exhibited enhanced resistance to Pst DC3000. Compared with that of the wild-type (WT), the real-time PCR and quantitative real-time PCR analysis revealed that the expression of pathogenesis-related genes (including PR1, PR3, PR4, and PR5), BAK1-interacting receptor kinase 1 gene, and BONZAI1 gene was upregulated in 35S::PeBAK1;1 transgenic tobacco plants. In conclusion, the PeBAK1;1 gene plays a positive regulatory role in 35S::PeBAK1;1 transgenic tobacco against Pst DC3000, which can enhance the resistance of plants to pathogen. © 2018 Science Press. All rights reserved.     

Research progress in microbial cytochrome P450 and xenobiotic metabolism北大核心CSCD

Cytochrome P450 (CYP450s) is a type of heme-mercaptide protein superfamily, which is distributed widely in animals, plants, and microorganisms. CYP450s can oxidize and degrade many exogenous compounds such as drugs, herbicides, pesticides, some persistent organic pollutants, and so on. Based on recent researches, this paper reviews the nomenclature, classification, structure, and catalytic mechanism of P450 enzymes, and summarizes the research progresses in the metabolism and biodegradation of xenobiotics using P450 enzymes from microorganisms. The nomenclature and classification of the P450 gene superfamily mainly rely on the similarities of amino acid sequences. Although the structures of P450 are conserved, their recognition sites towards to the substrates are variable. This is also the structural basis for the catalytic diversities of P450 enzymes. Few P450 enzymes from bacteria and fungi can metabolize and degrade xenobiotics such as polycyclic aromatic hydrocarbons, herbicides, and so on. However, these P450 enzymes are less likely be used in practical applications because of their low catalytic activities. In the future, more P450 enzymes with high degradable efficiencies towards xenobiotics are needed to be obtained using multiple omics tools or modifying the existing P450 enzymes, to achieve the bioremediation of the environment. © 2018 Science Press. All rights reserved.     

Carbon dioxide and methane emission from subsurface peatlands and its controlling factors北大核心CSCD

Peatland is an efficient carbon dioxide (CO2) sink on the continent and plays an important role in global carbon cycle. Climate change and human activities, two of the notable global environmental issues, have accelerated the degradation of peatlands during recent years. Global warming will increase the rate of aerobic decomposition in the surface of peatlands. Carbon stored in the subsurface of peatlands will be metabolized if the climatic conditions become favorable for decomposition. This study reviewed the carbon circle of subsurface peatland in natural environment and in environments disturbed by human activity or climate change. Furthermore, the major factors (environmental and human factors) that affect the carbon cycle were also discussed. According to a previous study, subsurface peatland will rapidly participate in the carbon cycle when the peatland is degraded. Water level, vegetation, and temperature were the main natural factors affecting the carbon cycle, whereas drainage, farming, and grazing were the main anthropogenic factors. Further studies should focus on different soil layer carbon dynamics, inorganic carbon content, and conservation and restoration of peatlands. The study methods should be a combination of macro with micro scale and focus on developing deep peat research techniques. Most of the previous studies focused on greenhouse gas emission and their response factors in short-term experiments. Thus, the mechanism and process of subsurface carbon are not clear and needs further study. © 2018 Science Press. All rights reserved.