固定CO2基因工程菌的构建

构建了含有ＲｕｂｉｓＣＯＦｏｒｍ ＩＩ基因的可转化大肠杆菌紫色非硫杆菌穿梭质粒（ＰＭＰＢ２）,将其转化紫色非硫杆菌野生型Ｒｈｏｄｏｐｓｅｕｄｏｍｏｎａｓｐａｌｕｓｔｒｉｓ Ｎｏ．７ 和紫色非硫杆菌ＲｕｂｉｓＣＯＦｏｒｍ Ｉ缺陷型ＲｈｏｄｏｐｓｅｕｄｏｍｏｎａｓｐａｌｕｓｔｒｉｓＮｏ．７ＤＦＩ,获得２ 株ＲｕｂｉｓＣＯ基因工程菌ＭＧ１１ 和ＭＧ１４,二者的ＲｕｂｉｓＣＯ 酶活性比对照菌分别提高７６ ．７％ 和８３．３％ ．连续传４０ 代表明,重组质粒在受体菌中是较稳定的     

Monitoring of soil biochemical quality parameters under greenhouse spinach cultivation through animal waste recycling

Under the intensive agricultural system, direct application of animal slurries to soils can provide a sustainable disposal of these wastes by inducing positive changes in soil quality and fertility. However, how animal wastes quantitatively affect the key nutrients (C, N, P and S) transforming soil enzymes is not clearly known. A greenhouse spinach cultivation study demonstrated that pig slurry, either in raw (RS) or processed (aerobically aged) (PS) form, significantly (p?β-glucosidase (23–39%), urease (59–103%), nitrate reductase (73–103%) and dehydrogenase (27–72%)) and microbial growth in soil as compared to the unamended control. However, it did not significantly (p?>?.05) alter the aryl sulphatase enzyme activity. Slurry applications also significantly improved the macro (N, P and K) and micronutrients (Cu, Mn, Zn and Fe) uptake by spinach plant and hence the yield (2.9–3.38 times higher than control). Similarly, compared to chemical fertilisers the application of pig slurries improved soil biological and biochemical parameters as well as plant nutrients uptake. This study demonstrated the closing of global energy and nutrient cycles through land application of animal wastes without compromising the crop yield.     

Design and use of group-specific primers and probes for real-time quantitative PCR

Real-time quantitative polymerase chain reaction (qPCR) has gained popularity as a technique to detect and quantify a specific group of target microorganisms from various environmental samples including soil, water, sediments, and sludge. Although qPCR is a very useful technique for nucleic acid quantification, accurately quantifying the target microbial group strongly depends on the quality of the primer and probe used. Many aspects of conducting qPCR assays have become increasingly routine and automated; however, one of the most important aspects, designing and selecting primer and probe sets, is often a somewhat arcane process. In many cases, failed or non-specific amplification can be attributed to improperly designed primer-probe sets. This paper is intended to provide guidelines and general principles for designing group-specific primers and probes for qPCR assays. We demonstrate the effectiveness of these guidelines by reviewing the use of qPCR to study anaerobic processes and biologic nutrient removal processes. qPCR assays using group-specific primers and probes designed with this method, have been used to successfully quantify 16S ribosomal Ribonucleic Acid (16S rRNA) gene copy numbers from target methanogenic and ammonia-oxidizing bacteria in various laboratory- and full-scale biologic processes. Researchers with a good command of primer and probe design can use qPCR as a valuable tool to study biodiversity and to develop more efficient control strategies for biologic processes.     

Efficacy of rapeseed residue and eggshell waste on enzyme activity and soil quality in rice paddy

Addition of plant residue into soils improves soil physiochemical properties and its fertility. Rapeseed residue is an emerging N source to paddy soils via rice-rape double-cropping practice. The objective of this study was to evaluate the effects of rapeseed residue and eggshell waste on chemical changes and enzyme activity in the rice paddy soil. The powdered eggshells at 0, 1, 3, and 5% were applied once to 7.0 kg paddy repacked soils in each pot treated with the rapeseed residue or the conventional N, P, and K fertilisers. Eight rice seedlings (Oriza sativa L. cv. Ilmibyeo) (40 days after sowing) were transplanted to the treated each pot. The contents of total C (TC) and N (TN), and organic matter (OM) were significantly increased in soils treated with the rapeseed residue compared to the N, P, and K fertilisers. With the addition of eggshell containing ～92% CaCO₃, a considerable increase of soil pH was observed in soils treated with the rapeseed residue and the N, P, and K fertilisers, compared to the untreated soil. Activities of β-glucosidase, urease, and arylsulfatase enzymes were higher in soils treated with the rapeseed residue than soils treated with the N, P, and K fertilisers. The eggshell additions at 1, 3, and 5% into soils treated with the rapeseed residue increased enzyme activity mainly resulting from N mineralisation, whereas no change in enzyme activity was observed in the soils treated with the NPK fertiliser. The combined use of the rapeseed residue and the eggshells can be beneficial to improve soil environment.     

Improving vulnerability assessment towards Integrated Coastal Zone Management (ICZM): a case study of small islands in Indonesia

Vulnerability assessment is one of the methods currently being used to measure the ocean and coastal sustainability in order to enable better evaluation and redesign of land-based development and policy-making. Because of different geological and geographical formations, the elements that comprise the vulnerability indicators are different from each other, and there are various vulnerability equations that have been used. At the present time, there are no unified vulnerability indicators that can be applied universally to every country. The Seribu Islands, Indonesia, also known in English as the Thousand Islands, consisting of 105 islands located to the north of Jakarta, have been chosen as a study area for vulnerability assessment according to the basic principles of Integrated Coastal Zone Management theory. The results indicate that in practice, Indonesian Integrated Coastal Zone Management legal systems do exist and that in some cases, part of the responsibility for the problems rests with legislation that imposes complex systems of administration, unrealistic sanctions and impractical solutions. This research also shows that inter-sectoral, inter-governance and spatial developments are the three components that need to be improved for the successful implementation of Integrated Coastal Zone Management in the region.     

The role of black carbon as a catalyst for environmental redox transformation

Black carbon (BC) is an important class of geosorbents that control the fate and transport of organic pollutants in soil and sediment. We previously demonstrated a new role of BC as an electron transfer mediator in the abiotic reduction of nitroaromatic and nitramine compounds by Oh and Chiu (Environ Sci Technol 43:6983–6988, 2009). We proposed that BC can catalyze the reduction of nitro compounds because it contains microscopic graphitic (graphene) domains, which facilitate both sorption and electron transfer. In this study, we assessed the ability of different types of BC—graphite, activated carbon, and diesel soot—to mediate the reduction of 2,4-dinitrotoluene (DNT) and 2,4-dibromophenol (DBP) by H₂S. All three types of BC enhanced DNT and DBP reduction. H₂S supported BC-mediated reduction, as was observed previously with a thiol reductant. The results suggest that BC may influence the fate of organic pollutants in reducing subsurface environments through redox transformation in addition to sorption.     

Phylogeography of the seaweed Ishige okamurae (Phaeophyceae): evidence for glacial refugia in the northwest Pacific region

Although benthic marine algae are essential components of marine coastal systems that have been influenced profoundly by past and present climate change, our knowledge of seaweed phylogeography is limited. The brown alga Ishige okamurae Yendo occurs in the northwest Pacific, where it occupies a characteristic belt in the exposed intertidal zone. To understand the patterns of genetic diversity and the evolutionary history of this species, we analyzed mitochondrial cox3 from 14 populations (221 individuals) throughout its range. The 17 haplotypes found in this study formed five distinct clades, indicating significant genetic structure. The high differentiation and number of unique (private) haplotypes may result from the recolonization of the species from glacial refugia. Three putative refugia, each with high genetic diversity, were identified: southern Korea (including Jeju Island), northern Taiwan, and central Pacific Japan. Recolonization of I. okamurae was probably determined by ocean currents and changes in sea level during the last glacial period.     

Selenium extractability from a contaminated fine soil fraction: implication on soil cleanup

Two batches of fine soil fraction of an acidic soil were deliberately contaminated with selenite (Se(IV)) and selenate (Se(VI)), respectively, and aged for more than 220 days. Speciation analysis using continuous flow-through hydride generation atomic absorption spectrometry (HGAAS) indicated that the species were predominant in their respective aged soils. A selective sequential extraction scheme was employed to fractionate the Se retained in the soils into six fractions of varying retentions. Abilities of various chemical reagents in extracting the Se in the two soil batches were then evaluated. The reagents investigated were sodium salts such as sodium chloride (NaCl), sodium sulfate (Na2SO4), sodium carbonate (Na2CO3), and sodium phosphate (Na3PO4), and two oxidants, namely, hydrogen peroxide (H2O2) and potassium permanganate (KMnO4). It was found that NaCl, Na2SO4, and Na2CO3 could only extract the exchangeable fraction of Se, while Na3PO4 could extract the exchangeable and strongly-bound fractions. Selenate was extracted more than Se(IV) by the salts. The kinetics of Se(IV) extraction by Na3PO4 could be best described by the Elovich model, while the Ritchie second-order model was the most appropriate to describe Se(VI) extraction. Efficiencies of the oxidants in Se(IV) extraction highly depended on their applied dosages. Both H2O2 and KMnO4 were able to extract greater than 93% of total Se, and therefore were significantly more effective than the salts in Se(IV) extraction.     

Comparative studies on toluene removal and pressure drop in biofilters using different packing materials

To select the best available packing material for malodorous organic gases such as toluene and benzene, biofilter performance was compared in biofilters employed different packing materials including porous ceramic (celite), Jeju scoria (lava), a mixture of granular activated carbon (GAC) and celite (GAC/celite), and cubic polyurethane foam (PU). A toluene-degrading bacterium, Stenotrophomonas maltophilia T3-c, was used as the inoculum. The maximum elimination capacities in the celite, lava, and GAC/celite biofilters were 100, 130, and 110 gm(-3) hr(-1), respectively. The elimination capacity for the PU biofilter was approximately 350 g m(-3) hr(-1) at an inlet loading of approximately 430 g m(-3) hr(-1), which was 2 to 3.5 times higher than for the other biofilters. The pressure drop gradually increased in the GAC/ celite, celite and lava biofilters after 23 day due to bacterial over-growth, and the toluene removal efficiency remarkably decreased with increasing pressure drop. Backwashing method was not effective for the control of biomass in these biofilters. In the PU biofilter however, backwashing allowed maintenance of a pressure drop of 1 to 3 mm H2O m(-1) and a removal efficiency of > 80%, indicating that the PU was the best packing material for toluene removal among the packing materials tested.     

Bioreduction of nitrate in groundwater using a pilot-scale hydrogen-based membrane biofilm reactor

A long-term pilot-scale H₂-based membrane biofilm reactor (MBfR) was tested for removal of nitrate from actual groundwater. A key feature of this second-generation pilot MBfR is that it employed lower cost polyester hollow fibers and still achieved high loading rate. The steady-state maximum nitrate surface loading at which the effluent nitrate and nitrite concentrations were below the Maximum Contaminant Level (MCL) was at least 5.9 g·N·(m²·d)^?1, which corresponds to a maximum volumetric loading of at least 7.7 kg·N·(m³·d) ^?1. The steady-state maximum nitrate surface area loading was higher than the highest nitrate surface loading reported in the first-generation MBfRs using composite fibers (2.6 g·N·(m²·d)^?1). This work also evaluated the H₂-utilization efficiency in MBfR. The measured H₂ supply rate was only slightly higher than the stoichiometric H₂-utilization rate. Thus, H₂ utilization was controlled by diffusion and was close to 100% efficiency, as long as biofilm accumulated on the polyester-fiber surface and the fibers had no leaks.