Airborne myxomycete spores: detection using molecular techniques

Myxomycetes are organisms characterized by a life cycle that includes a fruiting body stage. Myxomycete fruiting bodies contain spores, and wind dispersal of the spores is considered important for this organism to colonize new areas. In this study, the presence of airborne myxomycetes and the temporal changes in the myxomycete composition of atmospheric particles (aerosols) were investigated with a polymerase chain reaction (PCR)-based method for Didymiaceae and Physaraceae. Twenty-one aerosol samples were collected on the roof of a three-story building located in Sapporo, Hokkaido Island, northern Japan. PCR analysis of DNA extracts from the aerosol samples indicated the presence of airborne myxomycetes in all the samples, except for the one collected during the snowfall season. Denaturing gradient gel electrophoresis (DGGE) analysis of the PCR products showed seasonally varying banding patterns. The detected DGGE bands were subjected to sequence analyses, and four out of nine obtained sequences were identical to those of fruiting body samples collected in Hokkaido Island. It appears that the difference in the fruiting period of each species was correlated with the seasonal changes in the myxomycete composition of the aerosols. Molecular evidence shows that newly formed spores are released and dispersed in the air, suggesting that wind-driven dispersal of spores is an important process in the life history of myxomycetes. This study is the first to detect airborne myxomycetes with the use of molecular ecological analyses and to characterize their seasonal distribution.     

Apportionment of TEQs from four major dioxin sources in Japan on the basis of five indicative congeners

The major sources of dioxins (polychlorinated dibenzo-p-dioxins (PCDDs), polychlorinated dibenzofurans (PCDFs), and dioxin-like polychlorinated biphenyls (DL-PCBs)) in the environment in Japan have been considered to be combustion by-products, pentachlorophenol (PCP) formulations, chlornitrofen (CNP, 4-nitrophenyl-2,4,6-trichlorophenyl ether) formulations, and PCB products. Data on PCDDs, PCDFs and DL-PCBs from the four sources were analyzed, and indicative congeners whose concentrations were highly correlated with WHO-2006 toxic equivalencies (TEQs) were identified for each source sample. The indicative congeners for combustion by-products, PCP formulations, and CNP formulations were 2,3,4,7,8-pentachlorodibenzofuran, 1,2,3,4,6,7,8-heptachlorodibenzo-p-dioxin, and 1,2,3,7,8-pentachlorodibenzo-p-dioxin, respectively; for PCB products, the indicative congeners were IUPAC Nos. #126- and #105-pentachlorobiphenyls. Moreover, using the data on PCDDs, PCDFs and DL-PCBs, we developed a set of equations for estimating the apportionment of TEQs from the four sources by using only the concentrations of the above-mentioned five indicative congeners. The equations were used along with the analysis results of different types of environmental samples collected from Japan, to determine the TEQ contributions of the four sources. The obtained values of TEQ contributions seemed to be reasonable. The estimation method was developed by using the data on major dioxin sources in Japan, and therefore, it is generally adaptable to environmental samples from any part of Japan. The method may be usable for regions outside Japan if source identification is carried out and the estimation equations are modified appropriately.     

Cetacean DNA fingerprinting using the oligonucleotide (GGAT)4 as a probe

Since the discovery in 1985 of hypervariable minisatellite regions in human DNA, DNA fingerprinting has been widely used in animals and plants. Although many different probes have been developed recently, most investigators still use 33.15 and 33.6 human polycore minisatellites for hybridization studies of cetaceans. This animal order shows considerably less variability than humans, and thus some limitations have to be taken into account when using these probes. The present study demonstrates that the short repetitive tandem oligonucleotide (GGAT)₄ hybridizes with cetacean (Globicephala macrorhynchus andGrampus griseus) DNA, yielding individual-specific patterns of bands or DNA fingerprints. Freedom of design and shorter hybridization times of oligonucleotides allow an increase in the number of usable probes used, helping to overcome some of the problems found when only human polycore minisatellites are used.     

In situ measurement of isoprene in the marine air and surface seawater from the western North Pacific

Isoprene (2-methyl-1,3-butadiene) was measured on board of R/V Mirai for eight air samples and 14 seawater samples collected in the western North Pacific during ACE-Asia campaign (from 18 to 26 May 2001). The measurements were conducted in situ using a cryo-focus/gas chromatography/mass spectrometry (Cryo/GC/MS). Concentrations of isoprene ranged from 7.2 to 110 parts-per-trillion (pptv) in the marine air, and ranged from below 12 to 94 pmol l⁻¹ in the seawater. Based on these results, sea-to-air fluxes of isoprene were calculated to be 184 and 300 nmol m⁻² day⁻¹ for two samples, and the upper limits of the fluxes were also calculated to be from 32 to 300 nmol m⁻² day⁻¹. Atmospheric isoprene concentrations cannot be explained only by the flux from the seawater. Thus, the concentrations of isoprene in the marine air in western North Pacific should be significantly affected by terrestrial vegetational emission and subsequent long-range atmospheric transport of isoprene.     

Germination test on Komatsuna (Brassica rapa var. peruviridis) seed using water extract from compost for evaluating compost maturity: evaluating criteria for germination and effects of cultivars on germination rate

Germination tests on the Komatsuna (Brassica rapa var. peruviridis) seed using water extract from compost has often been performed in Japan to evaluate compost maturity; however, most of the germination tests have been carried out without using any rationally defined experimental criteria to determine germination and to explain the influence of cultivars. Here, we performed a series of germination tests to examine the applicability of the experimental criteria for germination and the influence of cultivars on germination rate. Germination rate varied according to the criteria introduced in this paper, and two criteria, "seed size (3)" and "5?mm (2)", were selected for testing. In addition, two types of inhibitory influence, stop and slowness, were observed and compared with the criteria. The logistic regression curve of Logit, a function of germination rate to logarithmic value of the dilution ratio of the water extract was parameterized to compare the effects of the cultivars on germination rate. The statistical analysis of the parameters showed that dilution ratio greatly influenced germination rate, and the cultivar itself also influenced the rate. Consequently, the specific experimental criteria for germination and determining the influence of cultivars were proven to be indispensable for evaluating compost maturity using the germination test.     

Spatial variability in habitat associations of pre- and post-settlement stages of coral reef fishes at Ishigaki Island,Japan

Successful settlement of pelagic fish larvae into benthic juvenile habitats may be enhanced by a shortened settlement period, since it limits larval exposure to predation in the new habitat. Because the spatial distribution of marine fish larvae immediately prior to settlement versus during settlement was unknown, field experiments were conducted at Ishigaki Island (Japan) using light trap sampling and underwater visual belt transect surveys to investigate the spatial distribution patterns of selected pre- and post-settlement fishes (Acanthuridae, Pomacentridae, Chaetodonidae and Lethrinidae) among four habitats (seagrass bed, coral rubble, branching coral and tabular coral). The results highlighted two patterns: patterns 1, pre- and post-settlement individuals showing a ubiquitous distribution among the four habitats (Acanthuridae) and pattern 2, pre-settlement individuals distributed in all habitats, but post-settlement individuals restricted to coral (most species of Pomacentridae and Chaetodontidae) or seagrass habitats (Lethrinidae). The first pattern minimizes the transition time between the larval pelagic stage and acquisition of a benthic reef habitat, the latter leading immediately to a juvenile lifestyle. In contrast, the second pattern is characterized by high settlement habitat selectivity by larvae and/or differential mortality immediately after settlement.     

A simple and convenient empirical survey method with a soil electrical conductivity meter for incineration residue-derived soil contamination

To facilitate field surveys for identifying areas of incineration residue-derived soil contamination, a simple and convenient method with a soil electrical conductivity meter was examined. First, the leaching test specified by Notification No. 13 of the Ministry of the Environment, 1973, was conducted on 506 samples of 11 types of wastes and compost, and the relationship between the concentrations of toxic elements [total Hg (T-Hg), Cd, Pb, Cr⁶⁺, and As] and values of electrical conductivity (EC) was examined. The results showed that bottom ash and fly ash were wastes with high EC values and that these wastes indicated higher levels of toxic elements. Second, an estimation method for the soil EC value of contaminated soil (ECc) was proposed based on the EC values of noncontaminated soil, and its usefulness was examined. The results of field surveys conducted at sites whose soils were suspected of contamination by dioxins and other pollutants derived from incineration residues showed that the contaminated spots and areas were identified by using ECc values. Moreover, comparison of the elemental contents of soils in terms of Cr, Ni, Zn, Na, K, Ca, Fe, Mn, and others, in addition to the above-mentioned toxic elements (excluding Cr⁶⁺), with those of the potential sources of pollution was verified to be effective for identifying the source of soil contamination.     

Photoreduction of Cr(VI) in wastewater by anodic nanoporous Nb2O5 formed at high anodizing voltage and electrolyte temperature

Environmental Science and Pollution Research - In this study, nanoporous anodic film was produced by anodization of niobium, Nb in a fluoride ethylene glycol electrolyte. The effect of anodization...