Evaluation of the water quality of the Hakata River based on diatoms

We investigated the epilithic diatom assemblage of samples collected from three sites of the Hakata River, Fukuoka, Japan, on November 26, 2008. Each taxon was photographed and identified. The 1747 diatom frustules collected were classified into 33 taxa belonging to 17 genera. Nitzschia fonticola was abundant at all sites. The DAIpo (the diatom assemblage index to organic water pollution) values for sites 1, 2, and 3 were 50.2, 44.1 and 48.0, respectively, indicating that the water quality of the Hakata River was at β-mesosaprobic level.     

Value of information analysis for adequate monitoring of carbon dioxide storage in geological reservoirs under uncertainty

As monitoring is essential for the proper management of geological storage of carbon dioxide (CO₂), the ability to value information from monitoring is indispensable to adequately design a monitoring program. It is necessary to judge whether the expected improvement in management is worth the cost of monitoring. The value of information (VOI) is closely related to the possible increase in expected utility gained by gathering the information, the concept of which can be applied to such judgement. Although VOI analysis has been extensively studied in the context of decision analysis, its application to the management of carbon dioxide capture and storage (CCS) operations is rare. This paper introduces and discusses the methodology of VOI analyses in the context of monitoring CO₂ storage. A motivating problem with discrete probabilities is used to illustrate the concept of VOI. It is demonstrated that information is not always of value; for information to be worthwhile, monitoring under uncertainty must satisfy certain conditions. This concept is then extended to continuous probability distributions. The effects of prior uncertainty and information reliability on the VOI are examined. It is shown that an excessive improvement in information accuracy yields little value and that the optimal level of reliability can be inferred. VOI analyses provide quantitative insights into the value of information-gathering activities and therefore can be an objective means to adequately design and impartially justify a monitoring program.     

Modeling Solute Transport in Volcanic Ash Soils with Cation Exchange and Anion Retardation

Groundwater under agricultural lands is often contaminated by nitrate. In southern Japan, aquifers are covered by volcanic ash soils that can leach nitrate to the groundwater. In this study, column experiments using two volcanic ash soils (Kuroboku and Akahoya) were carried out. A mixed solution of KNO₃ and K₂SO₄ was used in the leaching experiments. Based on the experiments, a reactive transport model was developed using the Constrained Interpolation Profile method for ion transport and used to calculate chemical equilibrium for the cation exchange reactions. Anion adsorption was modeled by retardation in the numerical model. The developed simulation model results were compared to results obtained by the reactive transport model PHAST. The developed model was shown to quite well reproduce general characteristics of the experimental results. Also, the developed model results agreed well with results from PHAST. Slight discrepancy between observed and calculated breakthrough curves was probably caused by ignoring the kinetic reaction in the model calculations.     

Prenatal diagnosis of triple X using fetal cells obtained by endocervical lavage

Prenatal diagnosis of aneuploidies currently relies on invasive procedures such as chorionic villous sampling and amniocentesis. These methods can provide an accurate diagnosis of the fetal karyotype but are relatively invasive. Here, we report a case of the prenatal detection of triple X using fetal cells obtained by lavage of the endocervical canal prior to amniocentesis, following ultrasound diagnosis of hydrops fetalis. Copyright © 2003 John Wiley & Sons, Ltd.     

Loss or major reduction of umami taste sensation in pinnipeds

Umami is one of basic tastes that humans and other vertebrates can perceive. This taste is elicited by L-amino acids and thus has a special role of detecting nutritious, protein-rich food. The T1R1 + T1R3 heterodimer acts as the principal umami receptor. The T1R1 protein is encoded by the Tas1r1 gene. We report multiple inactivating (pseudogenizing) mutations in exon 3 of this gene from four phocid and two otariid species (Pinnipedia). Jiang et al. (Proc Natl Acad Sci U S A 109:4956–4961, 2012) reported two inactivating mutations in exons 2 and 6 of this gene from another otariid species. These findings suggest lost or greatly reduced umami sensory capabilities in these species. The widespread occurrence of a nonfunctional Tas1r1 pseudogene in this clade of strictly carnivorous mammals is surprising. We hypothesize that factors underlying the pseudogenization of Tas1r1 in pinnipeds may be driven by the marine environment to which these carnivorans (Carnivora) have adapted and may include: the evolutionary change in diet from tetrapod prey to fish and cephalopods (because cephalopods and living fish contain little or no synergistic inosine 5′-monophosphate that greatly enhances umami taste), the feeding behavior of swallowing food whole without mastication (because the T1R1 + T1R3 receptor is distributed on the tongue and palate), and the saltiness of sea water (because a high concentration of sodium chloride masks umami taste).     

Field identification of ‘types’ A and B of the ascidian Ciona intestinalis in a region of sympatry

The ascidian species Ciona intestinalis is a major model chordate in developmental and evolutionary biology, and an important fouling organism and invasive species. However, genomic investigation has recently revealed the existence of two cryptic species, genetically distinct yet without obvious morphological differences, currently referred to as types A and B. Here, we show that they are externally distinctive in a zone of sympatry in the western English Channel. Examining genotyped specimens, we found that types A and B of C. intestinalis can generally be distinguished by body colour, pigmentation at the distal end of the siphons and the presence or absence of tubercles on the sides of the siphons. Detecting specimens of hybrid descent still requires detailed molecular analysis, but these visual characters in combination will identify living specimens of types A and B with high probability. These differences are shown to be inherited.     

Vertical zonation of endosymbiotic zooxanthellae within a population of the intertidal sea anemone,Anthopleura uchidai

Intertidal organisms commonly form zonation bands along the shore. Environmental stressors often determine the vertical position of each zonation band. These stressors may similarly affect the distribution pattern of endogenous species in their intertidal hosts. To evaluate this possibility, we investigated the distribution pattern of endosymbiotic zooxanthellae in the genus Symbiodinium in a population of the intertidal sea anemone Anthopleura uchidai. We used molecular genetics to identify the Symbiodinium clades and found that A. uchidai has two clades of Symbiodinium, clades A and F. These Symbiodinium clades were disproportionally distributed along the vertical gradient of the intertidal shore. Anemones on the upper shore exclusively possessed clade F Symbiodinium while clade A Symbiodinium became dominant in the sea anemones on the lower shore. Photosynthesis activity assays showed that these Symbiodinium clades had similar net productivities at 23.3 and 31.8 °C at all irradiance levels. At 35 °C, however, clade A Symbiodinium exhibited substantially lower net productivities than clade F Symbiodinium, demonstrating that these Symbiodinium clades have distinct tolerances to thermal stress. These results suggest that the thermal gradient across tidal height is a major factor shaping the zonation pattern of Symbiodinium clades in A. uchidai.     

Mass spectrometric study of secondary organic aerosol formed from the photo-oxidation of aromatic hydrocarbons

From measurements by an Aerodyne Aerosol Mass Spectrometer (AMS), secondary organic aerosol (SOA) formed in laboratory chambers is believed to be less oxidized than well-oxidized ambient organic aerosol (OA). However, the mass spectrum of SOA formed from the photo-oxidation of aromatic hydrocarbons has not been sufficiently studied by using AMS though these reactions are potential sources of urban SOA. In this study, we studied SOA formed from the photo-oxidation of seven aromatic hydrocarbons by using Time-of-Flight AMS. Strong mass signals from SOA were found at m/z 43 (m43) and 44 (m44) in all the experiments. The m44 to total organic aerosol mass ratio (m44/OA) increased with irradiation time. For example, the m44/OA ratio increased from 10.6% to 13.3% during irradiation for 11 h in an experiment with toluene. The average m44/OA ratios were determined to be 5.8–17.1% for all the experiments. The m44/OA decreased and the m43/OA increased with increasing number of alkyl substituents of precursor aromatic hydrocarbons. This is because low-reactive ketones are preferentially produced rather than aldehydes with increasing number of alkyl substituents. The m44/OA ratios of the benzene and monoalkylbenzene oxidation were 12.2–17.1% and were close to those of well-oxidized ambient OA. These findings are consistent with the hypothesis that the photo-oxidation of aromatic hydrocarbons is a potential source of urban SOA. In addition to oxygenated organic compounds, organic nitrogen oxides were also shown to be present in SOA by high-resolution mass spectra.     

Cryptic invasion of northeast Pacific estuaries by the Asian polychaete, Hediste diadroma (Nereididae)

The estuarine polychaete, Hediste diadroma (Nereididae), of eastern Asia was found at all six sites sampled in October 2009 in northeast Pacific estuaries, including the Columbia River, along a 300-km stretch of coastline in Washington and Oregon, USA. The immature worms were returned to the laboratory in Japan where 13 of them were cultured to sexual maturity after 5–7 months. These worms had the diagnostic, epitoke-specific spinigers that distinguish H. diadroma from all other Hediste species. Their egg sizes (140–170 μm), paragnath numbers on the proboscis, and chromosome number (2n = 28) were also consistent with those previously reported for the Japanese population of H. diadroma. The widespread distribution of H. diadroma indicates that it is a successful invader of the North American Pacific and it may have long escaped detection because of its morphological similarity to the native species, H. limnicola. The long pelagic life of H. diadroma larvae could have facilitated its successful trans-ocean dispersal with ballast water of ships.