Model selection criteria for overdispersed data and their application to the characterization of a host-parasite relationship

In the statistical modeling of a biological or ecological phenomenon, selecting an optimal model among a collection of candidates is a critical issue. To identify an optimal candidate model, a number of model selection criteria have been developed and investigated based on estimating Kullback’s (Information theory and statistics. Dover, Mineola, 1968) directed or symmetric divergence. Criteria that target the directed divergence include the Akaike (2nd international symposium on information theory. Akadémia Kiadó, Budapest, Hungary, pp 267–281, 1973, IEEE Trans Autom Control AC 19:716–723, 1974) information criterion, AIC, and the “corrected” Akaike information criterion (Hurvich and Tsai in Biometrika 76:297–307, 1989), AICc; criteria that target the symmetric divergence include the Kullback information criterion, KIC, and the “corrected” Kullback information criterion, KICc (Cavanaugh in Stat Probab Lett 42:333–343, 1999; Aust N Z J Stat 46:257–274, 2004). For overdispersed count data, simple modifications of AIC and AICc have been increasingly utilized: specifically, the quasi Akaike information criterion, QAIC, and its corrected version, QAICc (Lebreton et al. in Ecol Monogr 62(1):67–118 1992). In this paper, we propose analogues of QAIC and QAICc based on estimating the symmetric as opposed to the directed divergence: QKIC and QKICc. We evaluate the selection performance of AIC, AICc, QAIC, QAICc, KIC, KICc, QKIC, and QKICc in a simulation study, and illustrate their practical utility in an ecological application. In our application, we use the criteria to formulate statistical models of the tick (Dermacentor variabilis) load on a white-footed mouse (Peromyscus leucopus) in northern Missouri.     

The Effect of Aqueous Urea on the Processing, Structure and Properties of CGM

Corn gluten meal (CGM) is potentially a cost-effective raw material for producing a bioderivable thermoplastic. However, CGM disintegrates to a powder subsequent to processing with polar plasticisers, such as water. The hypothesis of this study was that aqueous urea could be used to denature protein within CGM and therefore encourage protein?Cprotein interactions leading to consolidated bioplastics when using water as a plasticiser. To assess this, the effects of aqueous urea on structure and properties of CGM with particular focus on storage were assessed. Processing of CGM with aqueous urea produced consolidated materials. FTIR analysis showed secondary structure was modified during processing, leading to increased amounts of ??-helices and random coils and reduction of the amount of intermolecular ??-sheets and turns. Above 6?wt% free water, the plasticising efficiency of water in processed CGM increased as the amount of denatured proteins increased. Below 6?wt% free water, protein secondary structure did not have a significant influence on thermal and flexural properties. It was found that storage environment and urea concentration influenced the rate of drying, however, the final water content was constant relative to CGM, and not urea. The materials were resistant to cracking at urea concentrations above 8?M, provided the mass loss during storage did not exceed 15?wt%.     

Evaluation of the potential methane yield of industrial wastewaters used in bioreactor landfills

To increase the moisture content of waste disposed in a bioreactor landfill, it is critical to secure the moisture source. In this study, industrial wastewater was evaluated as a potential moisture source for a bioreactor landfill with respect to the impact on methane generation. Industrial wastewater samples were collected from fishery, brewery and dairy industries. These samples were tested for basic water chemistry parameters, heavy metals, and methane generation using the regular and modified biochemical methane potential (BMP) assays. Despite high sodium and total phosphate concentrations in the fishery wastewater, a significant methane yield was observed (0.313?m³ CH₄/kg COD). However, a relatively large amount of fishery wastewater added at the phase of methane generation acceleration adversely affected microbial activity. Samples from the brewery and dairy wastewater did not indicate significant inhibitory effects on methane generation in either the regular or the modified BMP assay. This study demonstrates the utility of wastewater as an alternative to traditional moisture sources when used to enhance methane production in a bioreactor landfill.     

Arsenic species in the well water and sediments of the blackfoot disease area in Taiwan

The blackfoot disease (BFD) observed in southwestern Taiwan is due to drinking high arsenic concentrations in well water. This paper presents some results concerning the distributions of arsenic species in water and sediments collected in the BFD (well, river and coastal) area and the background (lake and ocean) area for comparison. The results show that the concentrations of arsenate (870 ± 26 ug/L) and arsenite (70.2 ± 2.6 ug/ L) in well waters, and the contents of arsenic (1640 ug/g) with high percentage of easily reducible (Fe and Mn oxides, 91.7%) and exchangeable and carbonate (4.6%) phases in well sediments were much higher than those in river, lake and coastal samples. Low arsenic (3.46–31.8 ug/g) with high percentages (73.8–97.3%) of detritus and minerals phase with low percentages (0.4–9.8%) of total carbonate and exchangeable phases were found in the river and coastal samples in the BFD area as well as the lake and ocean samples in background area. It might suggest that the higher concentrations of toxic As(III) in well water and arsenic with higher values of easily reducible, carbonate and exchangeable phases in the well sediments, combined with the higher values of dissolved organic carbon, humic and fulvic acids and aromatic carbon as well as the higher fluorescence indensity in the well water are the key factors to cause the BFD in Taiwan.     

In-hive patterns of temporal polyethism in strains of honey bees (Apis mellifera) with distinct genetic backgrounds

Honey bee workers exhibit an age-based division of labor (temporal polyethism, DOL). Younger bees transition through sets of tasks within the nest; older bees forage outside. Components of temporal polyethism remain unrevealed. Here, we investigate the timing and pattern of pre-foraging behavior in distinct strains of bees to (1) determine if a general pattern of temporal DOL exists in honey bees, (2) to demonstrate a direct genetic impact on temporal pacing, and (3) to further elucidate the mechanisms controlling foraging initiation. Honey bees selected for differences in stored pollen demonstrate consistent differences in foraging initiation age. Those selected for increased pollen storage (high pollen hoarding strain, HSBs) initiate foraging earlier in life than those selected for decreased pollen storage (low pollen hoarding strain, LSBs). We found that HSBs both initiate and terminate individual pre-foraging tasks earlier than LSBs when housed in a common hive environment. Unselected commercial bees (wild type) generally demonstrated intermediate behavioral timing. There were few differences between genotypes for the proportion of pre-foraging effort dedicated to individual tasks, though total pre-foraging effort differences differed dramatically. This demonstrates that behavioral pacing can be accelerated or slowed, but the pattern of behavior is not fundamentally altered, suggesting a general pattern of temporal behavior in honey bees. This also demonstrates direct genetic control of temporal pacing. Finally, our results suggest that earlier HSB protein (pollen) consumption termination compared to LSBs may contribute to an earlier decline in hemolymph vitellogenin protein titers, which would explain their earlier onset of foraging.     

Dynamic changes in radial oxygen loss and iron plaque formation and their effects on Cd and As accumulation in rice (Oryza sativa L.)

Temporal variations and correlations between radial oxygen loss (ROL), iron (Fe) plaque formation, cadmium (Cd) and arsenic (As) accumulation were investigated in two rice cultivars at four different growth stages based upon soil pot and deoxygenated solution experiments. The results showed that there were significant differences in ROL (1.1–16 μmol O₂ plant^?1 h^?1), Fe plaque formation (4,097–36,056 mg kg^?1), Cd and As in root tissues (Cd 77–162 mg kg^?1; As 49–199 mg kg^?1) and Fe plaque (Cd 0.4–24 mg kg^?1; As 185–1,396 mg kg^?1) between these growth stages. ROL and Fe plaque increased dramatically from tillering to ear emergence stages and then were much reduced at the grain-filling stage. Furthermore, significantly positive correlations were detected between ROL and concentrations of Fe, Cd and As in Fe plaque. Our study indicates that increased Fe plaque forms on rice roots at the ear emergence stage due to the increased ROL. This stage could therefore be an important period to limit the transfer and distribution of Cd and As in rice plants when growing in soils contaminated with these toxic elements.     

Efficacy of rapeseed residue and eggshell waste on enzyme activity and soil quality in rice paddy

Addition of plant residue into soils improves soil physiochemical properties and its fertility. Rapeseed residue is an emerging N source to paddy soils via rice-rape double-cropping practice. The objective of this study was to evaluate the effects of rapeseed residue and eggshell waste on chemical changes and enzyme activity in the rice paddy soil. The powdered eggshells at 0, 1, 3, and 5% were applied once to 7.0 kg paddy repacked soils in each pot treated with the rapeseed residue or the conventional N, P, and K fertilisers. Eight rice seedlings (Oriza sativa L. cv. Ilmibyeo) (40 days after sowing) were transplanted to the treated each pot. The contents of total C (TC) and N (TN), and organic matter (OM) were significantly increased in soils treated with the rapeseed residue compared to the N, P, and K fertilisers. With the addition of eggshell containing ～92% CaCO₃, a considerable increase of soil pH was observed in soils treated with the rapeseed residue and the N, P, and K fertilisers, compared to the untreated soil. Activities of β-glucosidase, urease, and arylsulfatase enzymes were higher in soils treated with the rapeseed residue than soils treated with the N, P, and K fertilisers. The eggshell additions at 1, 3, and 5% into soils treated with the rapeseed residue increased enzyme activity mainly resulting from N mineralisation, whereas no change in enzyme activity was observed in the soils treated with the NPK fertiliser. The combined use of the rapeseed residue and the eggshells can be beneficial to improve soil environment.     

Relationships Between Copper Species and Forms,Hydrographic and Biomass Parameters in the Taiwan Erhjin Chi Coastal Area

The first incident of green oysters (Crassostrea gigas) was reported in Taiwan in the Charting coastal area in January, 1986 and mortality was reported three months later. the cause of the greened oysters was identified as copper pollution. the copper content of the green oysters was extremely high - 2100 ppm, 2225 ppm, and 4400 ppm dry weight, in January, 1986, February 1987, and January 1989, respectively. in this paper we summarize the seasonal and regional distributions of copper species (complexed by inorganic and organic ligands, labile and non-labile, polar and non-polar) and forms (dissolved and particulate) and the hydrographic and biomass parameters (mainly particulate organic carbon, chloropyll -α, adenosine triphosphate and primary production) in sea water in the Erhjin Chi coastal area. in general, high concentrations of particulate material (0.24 to 724 ppb) and non-labile organic copper (0.03 to 21.5 ppb) were observed. Low values of polar organic copper (<0.02 to 16.5 ppb) indicated that non-polar organic complexes (0.3 to 20.4 ppb) from man-made organic pollutants were the major complexes in the area studied. On the basis of this data, the cause of greening and mortality in oysters is evaluated in relation to the bioavailable copper (sum of particulate and labile copper) and copper assimilative capacity (detoxicant). Finally, the correlations between the species and forms of copper, hydrographic and biomass parameters are also discussed.     

Relationship between total concentration and dilute HCl extraction of heavy metals in sediments of harbors and coastal areas in Korea

Total concentrations of Cr, Ni, Cu, Zn, Cd and Pb in surface sediments were determined to investigate the regional trends of heavy metal contamination in 11 coastal areas in Korea. Enrichment factor (EF) of heavy metals was calculated by comparing the level of their regional background. The averages of EF values in study areas were 0.99 for Cr, 1.05 for Ni, 4.23 for Cu, 1.80 for Zn, 3.92 for Cd and 1.54 for Pb, respectively. Dilute HCl extractions were useful to deduce the anthropogenic sources of heavy metals and the 1 M HCl extractable fractions of each metal varied from 0.3 to 37.3% for Cr, 1.9 to 66.3% for Ni, 4.2 to 92.9% for Cu, 7.1 to 99.7% for Zn, 10.9 to 98.9% for Cd and 15.0 to 99.1% for Pb. Comparing 1 M HCl extractable fraction to total concentration, large portions of Cu, Zn, Cd and Pb were present as potentially bioavailable fractions from anthropogenic input and were significantly correlated with their EF values showing r > 0.68.     

Size-dependent behavior of tuna in an array of fish aggregating devices (FADs)

Several lines of evidence indicate that aggregations of yellowfin tuna associated with floating objects are more frequently composed of small animals than larger ones. Also, the diet of small yellowfin tuna caught at anchored fish aggregating devices (FADs) around Oahu, Hawaii, was found to shift quite rapidly when these fish reached approximately 50 cm FL. In order to test for ontogenetic changes in aggregation behavior, we tagged and released two distinct size classes of yellowfin tuna in an array of anchored FADs around Oahu, Hawaii. Twenty-four yellowfin tuna 30–39 cm FL and 16 yellowfin tuna 63–83 cm FL were tagged with acoustic transmitters and released near anchored FADs equipped with automated acoustic receivers. Fish in the smaller size class stayed about 2.5 times longer at individual FADs than the larger fish (mean 4.05 days vs. 1.65 days) and displayed larger horizontal movements within the array. However, the durations of unassociated phases, residence times in the entire FAD array, percentage of time spent associated with FADs and numbers of movements between FADs did not show any difference between the two size groups. The observed size-dependent behavior is discussed in terms of physiological abilities, diet segregation and anti-predator behavior.