Evaluation of interference to conventional and real-time PCR for detection and quantification of fungi in dust

Advances in polymerase chain reaction (PCR) have permitted accurate, rapid and quantitative identification of microorganisms in pure cultures regardless of viability or culturability. In this study, a simple sample processing method was investigated for rapid identification and quantification of fungal spores from dust samples using both conventional and real-time PCR. The proposed method was evaluated for susceptibility to interference from environmental dust samples. Stachybotrys chartarum and Aspergillus fumigatus were used as test organisms. The sensitivity of detection in pure culture was 0.1 spore DNA equivalents per PCR reaction corresponding to 20 spores ml(-1) in the sample. However, 1 spore DNA equivalent per PCR reaction corresponding to 200 spores ml(-1) in the sample was the lowest amount of spores tested without interference in dust samples spiked with spores of either fungal species. The extent of inhibition was calculated using conventional and real-time PCR reactions containing fungal spores, specific primers, specific probes (for real-time PCR) and various amounts of dust. The results indicate that the extent of inhibition by dust on PCR varies with the type and amount of dust, and number of spores. No interference in the analysis of spiked samples was detected from 0.2 mg ml(-1) of four real-life dust samples at p-value >0.05 using 2 x 10(4) spores for conventional PCR and 2 x 10(5) spores for real-time PCR. However, samples containing >0.2 mg ml(-1) real-life dust compromised the PCR assay. These results suggest the potential usefulness of a simple sample processing method in conjunction with PCR for monitoring the fungal content of aerosols collected from indoor environments.     

Precipitation, pH and metal load in AMD river basins: an application of fuzzy clustering algorithms to the process characterization

In the present work, Acid Mine Drainage (AMD) processes in the Chorrito Stream, which flows into the Cobica River (Iberian Pyrite Belt, Southwest Spain) are characterized by means of clustering techniques based on fuzzy logic. Also, pH behavior in contrast to precipitation is clearly explained, proving that the influence of rainfall inputs on the acidity and, as a result, on the metal load of a riverbed undergoing AMD processes highly depends on the moment when it occurs. In general, the riverbed dynamic behavior is the response to the sum of instant stimuli produced by isolated rainfall, the seasonal memory depending on the moment of the target hydrological year and, finally, the own inertia of the river basin, as a result of an accumulation process caused by age-long mining activity.     

The sensitivity of mussel-watch programmes to detect temporal trends in the bio-availability of metals. A case study of the Saronicos Gulf of Greece

Statistical power analysis has been used to determine the sensitivity of the mussel-watch programme in Hellenic seas, with particular focus placed on the data obtained for metal content in mussels from the Saronicos Gulf during the period 1985-1997. Sample collection was carried out quarterly. Soft tissues of 60-100 similarly sized mussels (Mytilus galloprovincialis) were pooled into six composite samples and analysed by Atomic Absorption Spectroscopy (AAS). The study concludes that the resolution of monitoring programmes employed thus far is sufficiently high to detect temporal trends related to changes in contaminant levels caused either by drastic environmental control (such as those imposed on point-source pollutants) or by sudden increases in contaminant load. However, the detection of more subtle trends, which may be expected in the near future as a result of global pollution-control policies, is likely to require the adoption of much more sensitive programmes. In addition, the review of up-to-date knowledge on metal biology in mussels suggests that factors related to growth and reproduction should be taken into account to remarkably increase the resolution of mussel-watch programmes. Indicative maximum values for components of error to be complied with during routine monitoring are suggested.     

Exposure and inhalation risk assessment in an aluminium cast-house

To date the exposure, absorption and respiratory health effects of cast-house workers have not been described since most studies performed in the aluminium industry are focused on exposure and health effects of potroom personnel. In the present study, we assessed the external exposure and the absorbed dose of metals in personnel from the aluminium cast house. This was combined with an evaluation of respiratory complaints and the lung function of the personnel. 30 workers from an aluminium casting plant participated and 17 individuals of the packaging and distribution departments were selected as controls. The exposure was assessed by the quantification of total inhalable fume with metal fraction and by the determination of urinary aluminium, chromium, beryllium, manganese and lead concentration. Carbon monoxide (CO), carbon dioxide (CO2), aldehydes and polyaromatic hydrocarbons and man-made mineral fibres concentration were assessed as well. In order to evaluate their respiratory status each participant filled out a questionnaire and their lung function was tested by forced spirometry. Total inhalable fume exposure was maximum 4.37 mg m(-3). Exposure to the combustion gases, man-made mineral fibres and metal fume was well below the exposure limits. Beryllium could not be detected in the urine. The values of aluminium, manganese and lead in the urine were all under the respective reference value. One individual had a urinary chromium excretion above the ACGIH defined biological exposure index (BEI) of 30 microg g(-1) creatinine. There was no significant difference in any of the categories of the respiratory questionnaire and in the results of the spirometry between cast house personnel and referents (Chi-square, all p > 0.05). Exposure in cast houses seem to be acceptable under these conditions. However, peak exposure to fumes cannot be excluded and the potential risk of chromium and beryllium exposure due to the recycling of aluminium requires further attention.     

Assessing land use impacts on flood processes in complex terrain by using GIS and modeling approach

A distributed hydrologic modeling and GIS approach is applied for the assessment of land use impact in the Steinsel sub-basin, Alzette, Grand-Duchy of Luxembourg. The assessment focuses on the runoff contributions from different land use classes and the potential impact of land use changes on runoff generation. The results show that the direct runoff from urban areas is dominant for a flood event compared with runoff from other land use areas in this catchment, and tends to increase for small floods and for the dry season floods, whereas the interflow from forested, pasture and agricultural field areas contributes to the recession flow. Significant variations in flood volume, peak discharge, time to the peak, etc., are found from the model simulation based on the three hypothetical land use change scenarios.     

Distribution of Iron, Manganese, Zinc and Atrazine in Groundwater in Parts of Palar and Cheyyar River Basins, South India

A study was carried out in a part of Palar and Cheyyar river basin to evaluate the current status of iron, manganese, zinc and atrazine concentrations, their origin and distribution in groundwater. Groundwater samples were collected during post-monsoon (March 1998 and February 1999) and pre-monsoon (June 1999) periods from 41 sampling wells distributed throughout the study area. The groundwater samples were analyzed for trace metals using AAS and atrazine using HPLC. The concentration of the trace elements in groundwater is predominant during pre-monsoon period. Distribution pattern indicates that the concentration of these elements increases from west to northeast and towards Palar river. Lower concentrations in the central part may be due to recharge of fresh water from the lakes located here. During most of the months, as there is no flow in Palar river, the concentrations of trace elements in groundwater are high. Drinking water standards indicate that Mn and Zn cross the permissible limit recommended by EPA during the pre-monsoon period. A comparison of groundwater data with trace element chemistry of rock samples shows the abundance of trace elements both in the rock and water in the order of Fe > Mn > Zn and Fe > Zn > Mn. This indicates that iron in groundwater is derived from lithogenic origin. Further, Fe, Mn and Zn have good correlation in rock samples, while it is reverse in the case of water samples, indicating the non-lithogenic origin of Mn and Zn. Atrazine (a herbicide) was not detected in any of the groundwater samples in the study area, perhaps due to low-application rate and adsorption in the soil materials.     

氨改性中孔活性炭对Pb(Ⅱ)的吸附

为讨论表面改性对活性炭吸附特性的影响,用氨改性活性炭对Pb(Ⅱ)的吸附性能进行了研究。通过高温氨气吹扫对活性炭进行表面改性处理,观察了改性后活性炭物化性质的变化,研究了氨改性活性炭对Pb(Ⅱ)的吸附等温关系与动力学,并对吸附前后氨改性活性炭的形貌进行了分析。结果表明,氨改性后活性炭比表面积和总孔孔容均略有增大,活性炭中N元素含量明显增高,含氧官能团数量减少,零电荷点增大。氨改性后活性炭对Pb(Ⅱ)的吸附效果明显提高,吸附过程数据可用等温吸附方程描述,改性后活性炭对Pb(Ⅱ)的吸附符合拟二级动力学。Pb(Ⅱ)在氨改性活性炭表面上的附着明显可见。通过红外光谱分析,活性炭表面含氮官能团与Pb(Ⅱ)发生缔合作用。     

Long-term effects on nitrogen and benthic fauna of extreme weather events: Examples from two Swedish headwater streams

Climate change is expected to cause an increased frequency of extreme events such as heavy floods and major storms. Such stochastic events have an immediate impact on surface water quality, but the long-term effects are largely unknown. In this study, we assess long-term monitoring data from two Swedish headwater catchments affected by extreme weather events. At one site, where nitrogen effects in soil water, groundwater, and stream water were studied after storm-felling and subsequent forest dieback from bark beetle attack, long-term (>5 years) but relatively modest (generally <1 mg L^?1) increases in ammonium (NH₄-N) and nitrate (NO₃-N) concentrations were observed in the various aqueous media. At the other site, where effects on benthic fauna were studied in a stream impacted by extreme geophysical disturbances caused by rainstorm-induced flashflood, only short-term (1 year) effects were revealed both regarding diversity and composition of species.     

An exploratory study of air emissions associated with shale gas development and production in the Barnett Shale

Information regarding air emissions from shale gas extraction and production is critically important given production is occurring in highly urbanized areas across the United States. Objectives of this exploratory study were to collect ambient air samples in residential areas within 61 m (200 feet) of shale gas extraction/production and determine whether a “fingerprint” of chemicals can be associated with shale gas activity. Statistical analyses correlating fingerprint chemicals with methane, equipment, and processes of extraction/production were performed. Ambient air sampling in residential areas of shale gas extraction and production was conducted at six counties in the Dallas/Fort Worth (DFW) Metroplex from 2008 to 2010. The 39 locations tested were identified by clients that requested monitoring. Seven sites were sampled on 2 days (typically months later in another season), and two sites were sampled on 3 days, resulting in 50 sets of monitoring data. Twenty-four-hour passive samples were collected using summa canisters. Gas chromatography/mass spectrometer analysis was used to identify organic compounds present. Methane was present in concentrations above laboratory detection limits in 49 out of 50 sampling data sets. Most of the areas investigated had atmospheric methane concentrations considerably higher than reported urban background concentrations (1.8–2.0 ppm_v). Other chemical constituents were found to be correlated with presence of methane. A principal components analysis (PCA) identified multivariate patterns of concentrations that potentially constitute signatures of emissions from different phases of operation at natural gas sites. The first factor identified through the PCA proved most informative. Extreme negative values were strongly and statistically associated with the presence of compressors at sample sites. The seven chemicals strongly associated with this factor (o-xylene, ethylbenzene, 1,2,4-trimethylbenzene, m- and p-xylene, 1,3,5-trimethylbenzene, toluene, and benzene) thus constitute a potential fingerprint of emissions associated with compression.

Implications: Information regarding air emissions from shale gas development and production is critically important given production is now occurring in highly urbanized areas across the United States. Methane, the primary shale gas constituent, contributes substantially to climate change; other natural gas constituents are known to have adverse health effects. This study goes beyond previous Barnett Shale field studies by encompassing a wider variety of production equipment (wells, tanks, compressors, and separators) and a wider geographical region. The principal components analysis, unique to this study, provides valuable information regarding the ability to anticipate associated shale gas chemical constituents.     

Annual and weekly patterns of ozone and particulate matter in Jeddah,Saudi Arabia

Air pollution has been an increasing concern within the Kingdom of Saudi Arabia and other Middle Eastern countries. In this work the authors present an analysis of daily ozone (O₃), nitrogen oxide (NO_x), and particulate matter (<10 μm aerodynamic diameter; PM₁₀) concentrations for two years (2010 and 2011) at sites in and around the coastal city of Jeddah, as well as a remote background site for comparison. Monthly and weekly variations, along with their implications and consequences, were also examined. O₃ within Jeddah was remarkably low, and exhibited the so-called weekend effect—elevated O₃ levels on the weekends, despite reduced emissions of O₃ precursors on those days. Weekend O₃ increases averaged between 12% and 14% in the city, suggesting that NO_x/volatile organic compound (VOC) ratios within cities such as Jeddah may be exceptionally high. Sites upwind or far removed from Jeddah did not display this weekend effect. Based on these results, emission control strategies in and around Jeddah must carefully address NO_x/VOC ratios so as to reduce O₃ at downwind locations without increasing it within urban locations themselves. PM₁₀ concentrations within Jeddah were elevated compared with North American cites of similar climatology, though comparable to other large cities within the Middle East.

Implications:Daily concentrations of O₃, PM₁₀, and NO_x in and around the city of Jeddah, Saudi Arabia, are analyzed and compared with those of other reference cities. Extremely low O₃ levels, along with a significant urban weekend effect (higher weekend O₃, despite reduced NO_x concentrations), is apparent, along with high levels of PM₁₀ within the city. Urban O₃ in Jeddah was found to be lower than that of other comparable cities, but the strong weekend effect suggests that care must be taken to reduce downwind O₃ levels without increasing them within the city itself. Further research into the emissions and chemistry contributing to the reduced O₃ levels within the city is warranted.