Single-step nested multiplex PCR to differentiate between various bivalve larvae

A nested multiplex polymerase chain reaction (PCR) assay has been developed that allows the discrimination between six bivalve larvae common to Danish coastal waters (Cerastoderma edule, Macoma balthica, Mytilus edulis, Spisula subtruncata, Ensis americanus and members of the order Myoida). This assay involves the simultaneous use of a pair of general universally targeted 18S rRNA gene primers, five specific 18S rRNA gene targeted oligonucleotide primers internal (nested) to the universal primer pair and one species-specific primer that is not nested (Mya). The specificity of each primer was evaluated in silico, empirically, and verified further by sequencing of amplification products from single larvae collected from plankton samples. Identification of individually isolated bivalve larvae from plankton samples was based on the size of the PCR product produced by the specific primers after visualisation by agarose gel electrophoresis. Preliminary studies indicated that this method was suitable for use with freshly collected and preserved larvae, and is therefore suitable for field application.Communicated by M. Kühl, Helsingør     

Influence of hydrological and geochemical processes on the transport of chelated metals and chromate in fractured shale bedrock

Field-scale processes governing the transport of chelated radionuclides in groundwater remain conceptually unclear for highly structured, heterogeneous environments. The objectives of this research were to provide an improved understanding and predictive capability of the hydrological and geochemical mechanisms that control the transport behavior of chelated radionuclides and metals in anoxic subsurface environments that are complicated by fracture flow and matrix diffusion. Our approach involved a long-term, steady-state natural gradient field experiment where nonreactive Br- and reactive 57Co(II)EDTA2- 109CdEDTA2-, and 51Cr(VI) were injected into a fracture zone of a contaminated fractured shale bedrock. The spatial and temporal distribution of the tracer and solutes was monitored for 500 days using an array of groundwater sampling wells instrumented within the fast-flowing fracture regime and a slower flowing matrix regime. The tracers were preferentially transported along strike-parallel fractures coupled with the slow diffusion of significant tracer mass into the bedrock matrix. The chelated radionuclides and metals were significantly retarded by the solid phase with the mechanisms of retardation largely due to redox reactions and sorption coupled with mineral-induced chelate-radionuclide dissociation. The formation of significant Fe(III)EDTA byproduct that accompanied the dissociation of the radionuclide-chelate complexes was believed to be the result of surface interactions with biotite which was the only Fe(III)-bearing mineral phase present in these Fe-reducing environments. These results counter current conceptual models that suggest chelated contaminants move conservatively through Fe-reducing environments since they are devoid of Fe-oxyhydroxides that are known to aggressively compete for chelates in oxic regimes. Modeling results further demonstrated that chelate-radionuclide dissociation reactions were most prevalent along fractures where accelerated weathering processes are expected to expose more primary minerals than the surrounding rock matrix. The findings of this study suggest that physical retardation mechanisms (i.e. diffusion) are dominant within the matrix regime, whereas geochemical retardation mechanisms are dominant within the fracture regime.     

Tissue distribution, excretion, and metabolism of 1,2,7,8-tetrachlorodibenzo-p-dioxin in the rat

A tissue distribution, excretion, and metabolism study was conducted using a relatively non-toxic dioxin congener, i.e., 1,2,7,8-tetrachlorodibenzo-p-dioxin (1278-TCDD), to gain a better understanding of mammalian metabolism of dioxins. Conventional, bile duct cannulated, and germ free male rats were administered mg/kg quantities as a single oral dose. Elimination of 1278-TCDD was largely complete by 72 h. Distribution of [¹⁴C]1278-TCDD was low in all tissues examined. Metabolites were identified in urine, bile, and feces by negative ion FAB-MS and ¹H-NMR, or GC/MS. The major fecal metabolite was a NIH-shifted hydroxylated TCDD. The bile contained a glucuronide conjugate of this hydroxy TCDD, and a diglucuronide conjugate of a dihydroxy-triCDD. The major metabolites in urine were glucuronide and sulfate conjugates of 4,5-dichlorocatechol.     

Increased lipid accumulation but not reduced metabolism explains improved starvation tolerance in cold-acclimated arthropod predators

Predatory arthropods are used for biological control in greenhouses, but there is increasing interest to extend their use to the outdoor environment where temperatures are typically lower. Acclimation at low temperature increases the ability of ectotherms to cope with subsequent more extreme cold, but may involve costs or benefits to other performance traits. A recent study in mesostigmatid mites (Gaeolaelaps aculeifer) showed that starvation tolerance was improved following a period of cold exposure. However, the physiological mechanisms that underlie improved starvation tolerance following cold exposure were not investigated. To examine whether cold acclimation would also improve starvation tolerance in an insect, we repeated the starvation study in another arthropod predator, the pirate bug Orius majusculus, as well as in G. aculeifer. Before tests, the two species were acclimated at 10, 15, or 20 °C for 7 (G. aculeifer) or 16 (O. majusculus) days. We then analyzed the effects of thermal exposure on body composition, consumption, and basal metabolic rate in both species. Our results confirmed that exposure to low temperature improves starvation tolerance in these arthropod predators. Body composition analyses revealed that both species had accumulated larger lipid stores during exposure to colder temperature, which at least in part can explain the larger starvation tolerance following cold exposure. In contrast, consumption and basal metabolic rate were not changed by thermal acclimation. Our study indicates that predatory arthropods exposed to cold increase their physiological robustness and ability to endure environmental challenges, including low temperature and low prey availability.     

MODELING THE EFFECTS OF VARIABLE ANNUAL FLOW ON RIVER CHANNEL MEANDER MIGRATION PATTERNS,SACRAMENTO RIVER,CALIFORNIA, USA1

ABSTRACT: Flow regulation impacts the ecology of major rivers in various ways, including altering river channel migration patterns. Many current meander migration models employ a constant annual flow or dominant discharge value. To assess how flow regulation alters river function, variable annual flows ‐ based on an empirical relationship between bank erosion rates and cumulative effective stream power ‐ were added into an existing migration model. This enhanced model was used to evaluate the potential geomorphic and ecological consequences of four regulated flow scenarios (i.e., different hydrographs) currently being proposed on the Sacramento River in California. The observed rate of land reworked correlated significantly with observed cumulative effective stream power during seven time increments from 1956 to 1975 (r²= 0.74, p = 0.02). The river was observed to rework 3.0 ha/yr of land (a mean channel migration rate of 7.7 m/yr) with rates ranging from 0.8 ha/yr to 5.1 ha/yr (2.0 to 13.3 m/yr), during the analyzed time periods. Modeled rates of land reworked correlated significantly with observed rates of land reworked for the variable flow model (r²= 0.78, p = 0.009). The meander migration scenario modeling predicted a difference of 1 to 8 percent between the four flow management scenarios and the base scenario.     

Experience with the use of LCA-modelling (EASEWASTE) in waste management.

Life-cycle assessment (LCA) models are becoming the principal decision support tools of waste management systems. This paper describes our experience with the use of EASEWASTE (Environmental Assessment of Solid Waste Systems and Technologies), a new computerized LCA-based model for integrated waste management. Our findings provide a quantitative understanding of waste management systems and may reveal consistent approaches to improve their environmental performances. EASEWASTE provides a versatile system modelling facility combined with a complete life-cycle impact assessment and in addition to the traditional impact categories addresses toxicity-related categories. New categories dealing with stored ecotoxicity and spoiled groundwater resources have been introduced. EASEWASTE has been applied in several studies, including full-scale assessments of waste management in Danish municipalities. These studies led to numerous modelling issues: the need of combining process-specific and input-specific emissions, the choice of a meaningful time horizon, the way of accounting for biological carbon emissions, the problem of stored ecotoxicity and aspects of crediting the waste management system with the savings inherent in avoided production of energy and materials. Interpretation of results showed that waste management systems can be designed in an environmentally sustainable manner where energy recovery processes lead to substantial avoidance of emissions and savings of resources.     

Multispecies transport of metal–EDTA complexes and chromate through undisturbed columns of weathered fractured saprolite

Laboratory-scale tracer experiments were conducted to investigate the geochemical and hydrological processes that govern the fate and transport of organically chelated radionuclides and toxic metals in undisturbed saturated columns of weathered, fractured shale saprolite. Three long-term, reactive contaminant injections were pulsed onto three separate soil columns, with the following influent mixtures: (1) ¹⁰⁹CdEDTA²⁻, (2) ¹⁰⁹CdEDTA²⁻ and ^57,58Co(II)EDTA²⁻, and (3) ¹⁰⁹CdEDTA²⁻, ⁵⁷Co(III)EDTA⁻, and H⁵¹CrO₄⁻. Both single and multiple species experiments were conducted to determine the importance of interaction between the contaminants and competition for surface sites. Flow interruption was used to identify physical and chemical non-equilibrium (PNE and CNE) which were caused by multiple pore-region flow and rate-limited chemical reactions, respectively. Reactive contaminant transport through the fractured, weathered shale was affected by sorption, redox, and dissociation reactions, which were mediated by soil organic matter and surficial oxides of Fe, Mn, and Al. The transport of CdEDTA²⁻ was significantly influenced by ligand-promoted dissolution of subsurface Fe and Al sources, resulting in the liberation of Cd²⁺, Al(III)EDTA⁻ and Fe(III)EDTA⁻. Flow interruption confirmed that the surface-mediated dissociation reaction was time-dependent, with the stability of the CdEDTA²⁻ complex dependent on its residence time within the soil. The migration of Co(II)EDTA²⁻ was dominated by oxidization to the highly stable Co(III)EDTA⁻ species, and elevated effluent Mn²⁺ suggested that surficial Mn(IV) oxides likely catalyzed the redox reaction, though Fe-oxides may have also contributed to the reaction. Dissociation (12%) of the Co(II)EDTA²⁻ complex was first observed during flow interruption, indicating that rate-limited dissociation of the complex by Fe-oxides may be significant under equilibrium conditions. The transport of HCrO₄⁻ was significantly altered by the reduction of mobile Cr(VI) to irreversibly bound Cr(III). The reduction reaction was catalyzed by surface-bound natural organic matter and flow interruption confirmed that the reaction was time-dependent. There was little evidence of competitive effects between the various contaminants in the multispecies experiments, since each was influenced by a different geochemical process during transport through the soil. The results of this study further support research findings that suggest anionic toxic metals and radionuclide–organic complexes can be significantly influenced by soil geochemical processes that can both enhance and impede the subsurface migration of these contaminants.     

Choosing an Aerometric Data System

The air quality of an urban area depends to a great extent upon the quantity and type of fuel consumed. Thus, a marked change in energy demand from 1960 to 2000 A.D. will affect the air quality of all of our urban centers. Interwoven with this potential effect is the anticipated influence of the change in type and quality of fuels, e.g., nuclear fuels, high sulfur coals, and a major modification in energy derived motive power, i.e., fuel cells, and the subsequent depletion of natural gas as an energy raw material. The current trend is to greater urban population densities, and it is estimated that by the year 2000 A.D., 85 percent of America’s population will live on only 10 percent of the land mass. To assess the potential impact of the energy demands for the next half century on air quality, particularly of America’s urban centers, a review of current practices of combustion of coal, petroleum, and natural gas, and the potential effect on community air quality will be developed. To meet the impact of the interrelated changing patterns of population growth, urban developments, energy requirements and available sources, research needs on both a short and long term basis will be explored.     

Lake Temperature and Ice Cover Regimes in the Alaskan Subarctic and Arctic: Integrated Monitoring,Remote Sensing,and Modeling1

Arp, C.D., B.M. Jones, M. Whitman, A. Larsen, and F.E. Urban, 2010. Lake Temperature and Ice Cover Regimes in the Alaskan Subarctic and Arctic: Integrated Monitoring, Remote Sensing, and Modeling. Journal of the American Water Resources Association (JAWRA) 46(4): 777-791. DOI: 10.1111/j.1752-1688.2010.00451.x Abstract: Lake surface regimes are fundamental attributes of lake ecosystems and their interaction with the land and atmosphere. High latitudes may be particularly sensitive to climate change, however, adequate baselines for these lakes are often lacking. In this study, we couple monitoring, remote sensing, and modeling techniques to generate baseline datasets of lake surface temperature and ice cover in the Alaskan Subarctic and Arctic. No detectable trends were observed during this study period, but a number of interesting patterns were noted among lakes and between regions. The largest Arctic lake was relatively unresponsive to air temperature, while the largest Subarctic lake was very responsive likely because it is fed by glacial runoff. Mean late summer water temperatures were higher than air temperatures with differences ranging from 1.7 to 5.4°C in Subarctic lakes and from 2.4 to 3.2°C in Arctic lakes. The warmest mean summer water temperature in both regions was in 2004, with the exception of Subarctic glacially fed lake that was highest in 2005. Ice-out timing had high coherence within regions and years, typically occurring in late May in Subarctic and in early-July in Arctic lakes. Ice-on timing was more dependent on lake size and depth, often varying among lakes within a region. Such analyses provide an important baseline of lake surface regimes at a time when there is increasing interest in high-latitude water ecosystems and resources during an uncertain climate future.     

Metrics for integrating sustainability evaluations into remediation projects

The US Sustainable Remediation Forum (SURF) created a compilation of metrics (Metrics Toolbox) in response to a need for a broad set of metrics that could be used to assess and monitor the effectiveness of remedies in achieving sustainability goals. Metrics are the key impacts, outcomes, or burdens that are to be assessed or balanced to determine the influences and impacts of a remedial action. Metrics can reflect any of the three aspects of sustainability (i.e., environmental, social, or economic) or a combination of these aspects. Regardless, metrics represent the most critical sustainable outcomes from the perspective of the key stakeholders. The Metrics Toolbox is hosted online at www.sustainableremediation.org/library/guidance‐tools‐and‐other‐resources . By selecting metrics from the Metrics Toolbox as a starting point and considering a potentially wider suite of metrics in remedial program decisions, appropriate assessments can be made. Qualitative and quantitative metrics are tabulated for each remedial phase: remedial investigation, remedy selection, remedial design, remedial construction, operation and maintenance, and closure. Attributes for each metric are described so that remediation practitioners and key stakeholders can view the universe of metrics available and select the most relevant, site‐specific metrics for a particular site. For this reason, SURF recommends that remediation practitioners consider the metrics compiled in the Metrics Toolbox as a companion to the sustainable remediation framework published elsewhere in this journal and other sustainability evaluations. © 2011 Wiley Periodicals, Inc.