Bayesian nonparametric inference for the overlap of daily animal activity patterns

The study of the interaction among species is an active area of research in Ecology. In particular, it is of interest to evaluate the overlap of their ecological niches. Temporal activity is one of the niche’s axes most commonly used to explore ecological segregation among animal species, and many contributions focus on the overlap of this variable. Once the information of the temporal activity is obtained in the wild, the data is treated as a random sample. There exist different methods to estimate the overlap. Specifically, in the case of two species, one possibility is to estimate the density of the temporal activity of each species and then evaluate the overlap between these density functions. This leads naturally to the analysis of circular data. Most of the procedures currently in use impose some rather restrictive assumptions on the probabilistic models used to describe the phenomena, and only provide approximate measures of the uncertainty involved in the process. In this article, we propose a Bayesian nonparametric approach which incorporates a well-defined noninformative prior. We take advantage of the data structure to define such a prior in terms of the predictive distribution. To the best of our knowledge, this is a novel approach. Our procedure is compared with a well-known method using simulated data, and applied to the analysis of real camera-trap data concerning two mammalian species from the El Triunfo biosphere reserve (Chiapas, Mexico).     

Recent shoreline evolution and beach erosion along the central Adriatic coast of Italy: the case of Molise region

A study on the modern dynamics and shoreline changes from 1954 to 2014 of the Molise coast (central Adriatic Sea) has been carried out. Short to long-term shoreline changes and associated surface area variations have been assessed in GIS environment for the study coast, subdivided in nine coastal segments (S1-S9), by using 100-m regularly spaced transects. In addition, the possible influence of natural and anthropogenic factors, especially of climatic variability and engineered shoreline defense structures, has been investigated. The Molise coast has experienced notable long-term erosion (period 1054-2014) that caused an overall coastal land loss of approximately 940,000 m². Erosion was, yet, limited to coastal segments S1 and S7, nearest to the mouths of major rivers, namely Trigno and Biferno, while the major part of the study coast has remained essentially stable or even advanced. Increased shoreline protection by defense structures has generally favoured shoreline stability and frequently generated shoreline advance, except for segments S1 and S7. Observed differences in shoreline change rates over time at the decadal to interannual scale, have not find a response in the analysis of available data on meteo-marine conditions of the Molise coast and climate variability indices, pointing out the need to improve knowledge on meteomarine conditions and on climatic variability forcing of the study area. From 2004 to 2014, the Molise shoreline remained essentially stable. Nonetheless, most recent shoreline changes (period 2011-2014) and modern shoreline dynamics indicate that erosion has become more widespread, involving at least part of segments S2-S3 and S8-S9, located south of the river mouth segments. The localized long-term shoreline retreat and most recent shoreline erosion appear to be primarily related to channel adjustments of the Biferno and Trigno rivers that occurred since the 1950s under the control of human interventions on the rivers, especially the construction respectively of a dam and a check dam along their lower courses, that trap of most of their solid load, affecting so adversely the sediment budget of the river mouths areas and adjacent beaches. Overall data acquired on the recent shoreline evolution and modern shoreline dynamics of the Molise coast and on related causal factors provide a good basic knowledge for regional coastal management purposes, and for further scientific purposes. Particularly, they suggest the opportunity to deepen a number of aspects such as the relationship between the coast and river catchments feeding it, the possible influences on the Molise shoreline dynamics of the neighbouring coasts, the efficiency/obsolescence of defense structures and the present-day vulnerability to coastal erosion of the Molise coast.     

The assessment of the coastal vulnerability and exposure degree of Gran Canaria Island (Spain) with a focus on the coastal risk of Las Canteras Beach in Las Palmas de Gran Canaria

The Coastal Vulnerability and Exposure Degree (CVED) of the Gran Canaria Island and the coastal risk of Playa de Las Canteras (Las Palmas de G.C.) have been assessed by means of a GIS analysis. The evaluation of coastal vulnerability (H) has been performed by using two different levels of analysis: the first one regarding the entire Island (Coastal Vulnerability Index method - CVI), the second one regarding specifically Las Canteras Beach, selected for its socio-economic importance (Coastal Vulnerability Assessment method - CVA). The application of the CVI method, based on geologic-geomorphologic and meteomarine data easily available, has allowed the regional scale assessment of coastal vulnerability (H) along the Gran Canaria coastline and, therefore, the individuation of more critical coast stretches deserving further analysis. The application of the CVA method, based on more specific morphologic-sedimentary beach features that allow to consider both the beach retreat due to storm surge and the coastal inundation due to run-up on the beach, has provided a large scale detail on the coastal vulnerability of Las Canteras Beach. Socio-economic and damage indexes have been determined for the 15 coastal municipalities included in the study area and, by means of the resulting matrix product, the degree of exposure (E_x) along the Gran Canaria coast has been assessed. Finally, the combination of coastal vulnerability and exposure levels has allowed to obtain the Coastal Vulnerability and Exposure Degree (CVED) for the entire Island and the risk levels that characterize specifically Las Canteras Beach. Major results in terms of CVED highlight prevailing low vulnerability and exposure levels along the western coast, and overall high vulnerability and exposure levels along the eastern coast, from Las Palmas de G.C. to San Bartolomé de Tirajana. The focus made on Playa de Las Canteras has allowed to identify the areas characterized by medium and high risk levels that represent approximately one third (940 m) of the entire beach and are located in its central part. The used two-level analysis approach has proved its efficiency by highlighting the degree of coastal vulnerability along the study coast and, especially, more critical coast stretches (CVI method) such as the Playa de Las Canteras that can be successfully analysed with the CVA approach allowing for a large-scale assessment of risk aspects, essential for a correct definition of priority management strategies. Results obtained with the present study, along with the awareness of the increasing phenomena of coastal erosion and marine flooding arising on the mid-long term due to the effects of global climate change, highlight the need for the competent public administrations of Gran Canaria to develop a strategic approach to coastal management and sustainable development that considers as a whole socio-economic values and natural resources, coastal vulnerability and exposure degree, and risk aspects.     

Exploring the conservation status of an endangered coastal plant over the last nine years: a case study in Andalusia,Spain

Human pressure has been exponentially growing during recent decades in coastal areas, which have led to drastic losses of biodiversity in coastal ecosystems. The current conservation status of many coastal plant species is directly related to a lack of environmental criteria in the urban planning of coastal areas over recent decades. This study aimed to evaluate the evolution, over the last 9 years, of the conservation status of various populations of the endangered plant Glaucium flavum, exploring the extent to which human pressure and different management strategies practiced in the coastal areas where the populations are established have affected the conservation status of the species. The populations analysed have evolved in a different manner over the last 9 years, as have their threat factors, and a relationship was evident between their conservation status and the evolution of these different threat factors. Our results indicate that an appropriate planning of local management actions, such as the installation of walkways or the successful eradication of invasive species, may be determinant factors for successful conservation of the coastal vegetation. The presence of species that are sensitive to slight changes in the ecosystem, and the main factors that govern the plant performance of these species, must be given full consideration in decision-making processes of coastal planning and management.     

Effects of nanoparticles on Daphnia magna population dynamics

Spherical TiO₂ nanoparticles (npTiO₂) were prepared by controlled hydrolysis of tetraethoxy orthotitanate under a nitrogen atmosphere. ZnO nanoparticles (npZnO) were prepared using hydrothermal methods. The crystal structure, chemical, thermal and morphological properties of npZnO and npTiO₂ were characterised using Fourier Transform Infrared Spectrometer, enery-dispersive X-ray spectroscopy, X-ray diffraction, and scanning electron microscope techniques. The short- and long-term experiments were started with neonates taken from the same culture and laboratory condition. In the acute experiments, npTiO₂, npZnO, and cocktail concentrations were applied. 96h-LC₅₀ values were 1.8, 0.7, and 0.1?mg?L^?1, respectively (p?<?.05). For the chronic experiments, different npTiO₂ concentrations were performed. 21d-LC₅₀ value was 1.0?mgL^?1 (p?<?.05). Morphometry became progressively worse in concentrations of more than 1?mgL^?1 npTiO₂. Neonate and young individuals were more sensitive to death because of their low tolerance. This result was affected by population progeny and growth rates (p?<?.05). While control and 0.5?mgL^?1 npTiO₂ groups were determined as growing population, 1.5 and 2?mgL^?1 npTiO₂ groups had decreased population size as R₀ values. Consequently, the relationships between nanoparticle accumulation within Daphnia magna and its population structure and body morphometry for each concentration were important indicators. Its tolerance level to nanoparticles under laboratory conditions reflected its replacement and behaviour in the ecosystem.     

Unexpected behavior of Zn,Cd, Cu,and Pb in soils contaminated by ore processing after 70 years of burial

Environmental Chemistry Letters - Heavy metals in contaminated ore processing areas present a risk of contamination of waters and life. Therefore, the most mobile fractions of metals, which can be...     

The use of physiological characteristics for comparison of organic compounds phytotoxicity

The influence of intact (FLT) and photomodified (phFLT) fluoranthene (0.05, 0.5 and 5 μmol l⁻¹) and herbicide Basagran (5, 20, 35 and 50 nmol l⁻¹) on the germination, growth of seedlings and photosynthetic processes in pea plants (Pisum sativum L., cv. Garde) was investigated. The germination was significantly inhibited already by the lowest concentration (0.05 μmol l⁻¹) of FLT and phFLT, while Basagran caused inhibition only in higher concentrations (35 and 50 nmol l⁻¹). The growth of roots was significantly inhibited by higher concentration 5 μmol l⁻¹ of both FLT and phFLT and the shoot of seedlings was significantly influenced only by photomodified form. The length of root and shoot was inhibited already by concentration 5 nmol l⁻¹ of Basagran. Organic compounds applied on chloroplasts suspension influenced primary photochemical processes of photosynthesis. In chlorophyll fluorescence parameters, the significant increase of F₀ values and the decrease of F_V/F_M and Φ_II values by application of FLT (0.5 and 5 μmol l⁻¹) and phFLT (0.05, 0.5 and 5 μmol l⁻¹) was recorded. The maximum capacity of PSII (F_V/F_M) was influenced by the highest (50 nmol l⁻¹) and the effective quantum yield of PSII (Φ_II) already by the lowest (5 nmol l⁻¹) concentration of Basagran. Hill reaction activity decreased and was significantly inhibited by higher concentration (0.5 and 5 μmol l⁻¹) of FLT and phFLT and already by the lowest concentration (5 nmol l⁻¹) of Basagran.     

Inverse modeling of multicomponent reactive transport through single and dual porosity media

Compacted bentonite is foreseen as buffer material for high-level radioactive waste in deep geological repositories because it provides hydraulic isolation, chemical stability, and radionuclide sorption. A wide range of laboratory tests were performed within the framework of FEBEX (Full-scale Engineered Barrier EXperiment) project to characterize buffer properties and develop numerical models for FEBEX bentonite. Here we present inverse single and dual-continuum multicomponent reactive transport models of a long-term permeation test performed on a 2.5 cm long sample of FEBEX bentonite. Initial saline bentonite porewater was flushed with 5.5 pore volumes of fresh granitic water. Water flux and chemical composition of effluent waters were monitored during almost 4 years. The model accounts for solute advection and diffusion and geochemical reactions such as aqueous complexation, acid-base, cation exchange, protonation/deprotonation by surface complexation and dissolution/precipitation of calcite, chalcedony and gypsum. All of these processes are assumed at local equilibrium. Similar to previous studies of bentonite porewater chemistry on batch systems which attest the relevance of protonation/deprotonation on buffering pH, our results confirm that protonation/deprotonation is a key process in maintaining a stable pH under dynamic transport conditions. Breakthrough curves of reactive species are more sensitive to initial porewater concentration than to effective diffusion coefficient. Optimum estimates of initial porewater chemistry of saturated compacted FEBEX bentonite are obtained by solving the inverse problem of multicomponent reactive transport. While the single-continuum model reproduces the trends of measured data for most chemical species, it fails to match properly the long tails of most breakthrough curves. Such limitation is overcome by resorting to a dual-continuum reactive transport model.     

Spatial trends of polyfluorinated compounds in guillemot (Uria aalge) eggs from North-Western Europe

Polyfluorinated alkyl compounds (PFCs) are a group of chemicals of growing concern that have been detected in biological and abiotic samples worldwide. This study reports the concentrations of a suite of PFCs: perfluorooctyl sulfonate (PFOS), perfluorooctyl sulfonamide (PFOSA) and perfluorinated carboxylic acids (PFCAs) in guillemot (Uria aalge) eggs, collected in North-Western Europe, from Iceland, the Faroe Islands, Sweden and two locations in Norway. The highest concentrations of PFOS were found in samples from Sweden (mean 400 ng g(-1) wet weight (w.w.)), which were almost five times higher than concentrations found in Norwegian samples (mean 85 ng g(-1)w.w. from both sample sites). The concentrations found in Icelandic and Faroe samples were lowest (mean 16 and 15 ng g(-1)w.w., respectively). Only Swedish samples differed significantly from the other locations. In general, PFCAs show a different spatial trend than PFOS. Perfluorooctanoic acid (PFOA) was not detected in any sample and perfluorononanoic acid (PFNA) was only detected in samples from Sweden. The most abundant PFCA was perfluoroundecanoic acid (PFUA) with highest concentrations in samples from Sweden (mean 82 ng g(-1)w.w.), samples from the Faroe Islands had the second highest concentration (mean 57 ng g(-1)w.w.) and samples from Iceland and Norway had concentrations ranging between 18 and 30 ng g(-1)w.w. The original hypothesis was based on the idea that PFC concentrations are the highest close to more densely populated and industrialized areas and lower levels in remote areas. However, the geographic pattern is more complicated than predicted and varies among different PFCs.