Evaluation of the methyl ester O-methyl acetate derivative of muramic acid for the determination of peptidoglycan in environmental samples by ion-trap GC-MS-MS

Muramic acid (MA) is a unique amino sugar that is a constituent of the peptidoglycan (PG) present in prokaryotic cell walls. MA can serve as a marker for quantifying bacterial load, e.g. in indoor environments, by using gas chromatography-tandem mass spectrometry (GC-MS-MS). We demonstrated recently that the methyl ester O-methyl acetate (MMA) derivative can be used to detect MA in house dust by ion-trap GC-MS-MS. However, since the MMA derivative is not formed from free MA quantification was not optimal. Here we report 1) significant improvements in sample preparation of the MMA derivative and 2) an evaluation of the performance of derivative, using for comparison the alditol acetate derivative, the gold standard in quantitative trace analysis of MA in complex matrices. The MMA derivative was analysed using an MS instrument with internal ionization and the alditol acetate derivative was analysed using an instrument with external ionization. 13C-labelled cyanobacteria, containing MA in their PG, were used as the internal standard. A linear relationship was found between the two methods in studies on 27 parallel samples of airborne dust from school classes collected on filters. Although the analytical sensitivity of the MMA derivatives was somewhat slightly lower than of the alditol acetate derivative, this may be due to differences in yield of derivative, sample clean-up efficiency, or different performance of the GC columns or MS instruments. However preparation of the MMA derivative is quick and compatible with preparation of methyl esters of 3-hydroxy fatty acids (used as markers of Gram negative endotoxin) allowing the levels of both markers to be determined in the same dust sample. In conclusion, the MMA procedure can be used to determine MA in environmental samples with good reproducibility provided the concentration of the 13C-labelled MA internal standard in the cyanobacteria is first determined with an alternative method.     

Localizing Climate Change: Nordic Homeowners’ Interpretations of Visual Representations for Climate Adaptation

In recent years, effort has been put into developing various forms of climate visualization to create opportunities for people to explore and learn about local climate change risks and adaptation options. However, how target audiences make sense of such climate visualization has rarely been studied from a communication perspective. This paper analyses how Nordic homeowners made sense of a specific climate visualization tool, the VisAdapt? tool. Involving 35 homeowners from three cities in 15 group test sessions, this study analyses the interpretive strategies participants applied to make sense of and assess the relevance of the visualized data. The study demonstrates that participants employed a set of interpretive strategies relating to personal experience and well-known places to make sense of the information presented, and that critical negotiation of content played an important role in how participants interpreted the content.     

Status and trends in Arctic vegetation: Evidence from experimental warming and long-term monitoring

Changes in Arctic vegetation can have important implications for trophic interactions and ecosystem functioning leading to climate feedbacks. Plot-based vegetation surveys provide detailed insight into vegetation changes at sites around the Arctic and improve our ability to predict the impacts of environmental change on tundra ecosystems. Here, we review studies of changes in plant community composition and phenology from both long-term monitoring and warming experiments in Arctic environments. We find that Arctic plant communities and species are generally sensitive to warming, but trends over a period of time are heterogeneous and complex and do not always mirror expectations based on responses to experimental manipulations. Our findings highlight the need for more geographically widespread, integrated, and comprehensive monitoring efforts that can better resolve the interacting effects of warming and other local and regional ecological factors.     

Marsh surface sediment deposition and the role of tidal creeks: Implications for created and managed coastal marshes

The need to understand the processes contributing to marsh sedimentation has become more urgent with the recent recognition of the role of tidal marshes as sea defences, as well as the many restoration efforts currently under way. This study was designed to build upon previous sedimentation work at Scolt Head Island by Combining techniques for measuring short-term sedimentation, with detailed assessment of hydroperiod, previously used only in comparison with longer-term accretion measurements or in micro-tidal systems. Measurements of water level, sediment deposition (at various distances from the creek margin) and suspended sediment concentration (SSC) (creek margin and an interior site) were made at Hut Marsh over three sequential over-marsh tides during May 1994. Sediment trap data show a significant trend of declining sediment deposition away from the creek when data from all three tides are combined. All tides show higher SSC on the flood tide than on the ebb tide at the creek margin location. There is little difference in flood and ebb SSCs at the interior site. An order of magnitude decrease in sediment deposition within 20 m on the creek shows the rapidity with which sediment is deposited on these marshes. Higher tides influence both the magnitude and pattern of marsh surface sediment deposition. Increased creek velocities on higher tides provide more potential for resuspension within the creek and increase the supply of sediment to the marsh surface. This study suggests that the design of tidal creeks may be essential for the development of sustainable coastal marshes in restoration projects.     

An estimating function approach to the inference of catch-effort models

A class of catch-effort models, which allows for heterogeneous removal probabilities, is proposed for closed populations. The model includes three types of removal probabilities: multiplicative, Poisson and logistic. The usual removal and generalized removal models then become special cases. The equivalence of the proposed model and a special type of capture-recapture model is discussed. A unified estimating function approach is used to estimate the initial population size. For the homogeneous model, the resulting population size estimator based on optimal estimating functions is asymptotically equivalent to the maximum likelihood estimator. One advantage for our approach is that it can be extended to handle the heterogeneous populations in which the maximum likelihood estimators do not exist. The bootstrap method is applied to construct variance estimators and confidence intervals. We illustrate the method by two real data examples. Results of a simulation study investigating the performance of the proposed estimation procedure are presented.     

Monitoring the Elimination of Persistent Toxic Substances from the Great Lakes; Chemical and Physiological Evidence from Adult Herring Gulls

To assess progress towards virtual elimination of PCBs, DDE, dieldrin and Mirex and their associated physiological effects, we compared their concentrations in pooled livers of adult herring gulls (Larus argentatus) repeatedly sampled at 8 Great Lakes colonies and a reference colony on the Atlantic coast between 1974 and 1993. We measured the relative thyroid mass and concentrations of highly carboxylated porphyrins and retinyl palmitate in the liver of each individual. PCBs, dieldrin and mirex declined in 7 of 8 colonies while DDE decreased in six. The greatest decreases occurred pre-1985. PCBs and DDE did not decrease in gulls from Middle Island in western L. Erie. Middle Island and Saginaw Bay had the highest concentrations of PCBs of 11 Great Lakes colonies in the 1990s. Thyroids of gulls from Great Lakes colonies were slightly enlarged but the degree of enlargement has decreased over time. In 1991, gulls from Great Lakes colonies had slight to moderately elevated concentrations of highly carboxylated porphyrins. In the early 1990s, hepatic stores of retinyl palmitate were very seriously depleted in gulls from the Detroit River, western basin of Lake Erie, and Lake Ontario, reflecting decreased availability and altered storage. We conclude that PCBs and/or other persistent toxic substances in the food of herring gulls have not been virtually eliminated.     

Caveats to quantifying ecosystem services: fruit abortion blurs benefits from crop pollination.

The recent trend to place monetary values on ecosystem services has led to studies on the economic importance of pollinators for agricultural crops. Several recent studies indicate regional, long-term pollinator declines, and economic consequences have been derived from declining pollination efficiencies. However, use of pollinator services as economic incentives for conservation must consider environmental factors such as drought, pests, and diseases, which can also limit yields. Moreover, "flower excess" is a well-known reproductive strategy of plants as insurance against unpredictable, external factors that limit reproduction. With three case studies on the importance of pollination levels for amounts of harvested fruits of three tropical crops (passion fruit in Brazil, coffee in Ecuador, and cacao in Indonesia) we illustrate how reproductive strategies and environmental stress can obscure initial benefits from improved pollination. By interpreting these results with findings from evolutionary sciences, agronomy, and studies on wild-plant populations, we argue that studies on economic benefits from pollinators should include the total of ecosystem processes that (1) lead to successful pollination and (2) mobilize nutrients and improve plant quality to the extent that crop yields indeed benefit from enhanced pollinator services. Conservation incentives that use quantifications of nature's services to human welfare will benefit from approaches at the ecosystem level that take into account the broad spectrum of biological processes that limit or deliver the service.     

Foraging in a variable environment: weather patterns and the behavioral ecology of baboons

We investigated the long-standing premise in behavioral ecology that the environment affects behavior and demography. We did this by evaluating the extent to which year-to-year variability in the behavioral ecology of a nonhuman primate population could be modeled from meteorological patterns. Data on activity profiles and home range use for baboons (Papio cynocephalus) in Amboseli, Kenya, were obtained over a 10-year period for three social groups: two completely wild-foraging ones, and a third that supplemented its diet with refuse from a nearby tourist lodge. The relationships across years among activity budgeting, travel distance, group size, and measures of temperature and rainfall patterns differed among the social groups. Although meteorological variation generally correlated with behavioral variation in the completely wild-foraging groups, different weather variables and direction of relationships resulted for each group. In addition, different relationships among variables were found before and after home-range shifts. The food-enhanced group spent half as much time foraging as did the other groups and therefore could be used to evaluate the relative extent to which foraging time was a limiting factor for resting and social time. Under their relaxed ecological conditions, the food-enhanced animals increased resting time much more than social time. These findings, combined with supplementary information on the population, lead us to suggest that baboons use a suite of interrelated responses to ecological variability that includes not only changes in activity budgets, but also home-range shifts, changes in the length of the active period, and changes in group size through fissions. Moreover, our results imply that group differences as well as interpopulational and interspecific differences in behavioral ecology provide significant sources of variability. Therefore, social groups rather than populations may be the appropriate unit of analysis for understanding the behavioral ecology of baboons and other highly social primates. The different patterns we observed among groups may have fitness consequences for the individuals in those groups and thereby affect population structure over time. Received: 18 February 1995/Accepted after revision: 6 January 1996     

Trends in sediment metal concentrations in the River Avoca, South-East Ireland

Variation in sediment metal concentrations in the River Avoca, which is severely polluted by acid mine drainage (AMD) discharged from the abandoned sulphur and copper mines in Avoca, is reported. A survey of surface and subsurface sediments was repeated after seven years during exceptionally low flow conditions in 2001. The present study found that the reference (up-stream) site used in the original 1994 study was itself impacted by AMD, showing sediment metal enrichment by AMD to be greater than originally thought. The new reference site contained elevated Pb (570 µg g^–1) in the subsurface sediment due to abandoned Pb-Zn mines 25 km further upstream. Concentrations of Cu (43 µg g^–1), Zn (349 µg g^–1) and Fe (4.0%) were normal for uncontaminated rivers. All the downstream sites showed sediment metal enrichment arising from the AMD (Cu and Zn p < 0.001; Fe p < 0.01). Subsurface concentrations of metals immediately below the mixing zone were Cu 904 µg g–1 (sd 335), Zn 723 µg g–1 (sd 93), Fe 6.3% (sd 1.5) and Pb 463 µg g^–1 (sd 279). Monthly variation in metal concentrations at sites was not significantly different (p > 0.05). Although surface sediment metal concentrations were more variable, they followed similar trends to subsurface sediment. There were no significant differences in the subsurface sediment concentrations for either Cu or Zn over the period 1994 and 2001 immediately below the mines, although at the lowest site Zn had decreased by 35% over the period (p < 0.01). However there was a significant (p < 0.01) decrease over the period in the Fe concentration at all the impacted sites. This corresponds to a reduction in Fe concentration in the AMD and indicates that some remediation has occurred in the river since 1994.