Detection of Torque Teno Sus Virus in Pork Bile and Liver Sausages

Torque teno viruses (TTV) are small DNA viruses widespread among humans and pigs. The clinical significance of TTV infections in either humans or pigs is uncertain. In fact, TTV viremia is highly prevalent in patients with different pathologies, but it can also be frequently observed in healthy subjects. Virus infection in pigs is considered a putative cofactor in several diseases; despite being detected frequently in healthy animals, its role still remains unknown. The present study aimed to investigate the presence of Torque teno sus virus (TTSuV) in 62 bile samples collected from pigs at slaughterhouse and in 36 fresh pork liver sausages bought at point of sale. Quantitative Real-Time PCR, confirmed that 19.4 and 58.3 % of bile and sausage samples tested positive for TTSuV, respectively. The mean viral load was established as 5.6 × 10⁴ GE/µl for bile and 7.16 × 10³ GE/g for sausages. TTSuV nucleotide sequence analysis confirmed a wide heterogeneity among the circulating TTSuV strains, which included both TTSuV1 and TTSuV2.     

Monitoring tricyclazole residues in rice paddy watersheds

Pesticide application to rice paddies may affect the quality of environmental resources such as groundwater and surface water. The distribution of residues of tricyclazole, an environmentally persistent fungicide used widely in Italy, was monitored in the network of surface water bodies surrounding the main rice production area in Italy. The location of monitoring sites was based on the potential risk for contamination with tricyclazole. This was determined as a function of the area of rice grown, the geographical distribution of rice crops susceptible to the pest, and sales of tricyclazole. Monitoring sites were also located to represent different spatial scales (farm, catchment and basin). For water samples taken shortly after application in July and August, the highest concentrations of tricyclazole were measured at the farm sites. However, residues were also detected at the catchment and basin scale. The 95% of the measured residue levels was below 9.80, 1.20 and 1.15 microg l(-1), at the farm, catchment and basin scales, respectively. In sediment, tricyclazole residues were detected in 12 out 176 samples collected with the 95% of the measured residue levels below the concentration of 0.03 mg kg(-1). Residues were sporadically detected in samples taken after the crop was harvested in November and December. Variables such as the scale of sampling, the season and the year, were significant in determining pesticide residue distribution. The type of water body was less significant.     

An improved index for monitoring metal pollutants in surface sediments

An approach for defining the quality of surface sediments of limited areas in terms of heavy metal contents is proposed. Sediments were taken on a bi‐dimensional mapping, for checking possible different sources of pollution in the case study, a harbour zone. Non residual metals were determined by ICP‐AES in cold diluted hydrochloric acid leachates of sediments. An “enrichment factor”;, r, can be computed for each metal: metals with r values exceeding unity can be considered as indicators of metal pollution. A “total enrichment factor”;, R, was proposed in order to assess the degree of pollution of sediments for each site. R is an adimensional value that accounts for the presence of metals that exceed threshold values determined by background concentrations.     

Atmospheric pollution by PAHs, PCDD/Fs and PCBs simultaneously collected at a regional background site in central Italy and at an urban site in Rome

Concentrations of PAHs and PCDD/Fs were measured throughout one year, and PCBs during the second semester, at a rural site in a natural park representative of background pollution in central Italy; results were compared with simultaneous measurements performed at an urban site in Rome 60km away. Twenty-four daily samples were collected at each site by a high-volume PM(10) sampler from February 2000 to January 2001. After ultrasonic extraction and clean-up by TLC, samples were analysed by GC-MS. Mean concentrations of benzo[a]pyrene (BaP, as a marker of carcinogenic PAHs), summation operatorPCDD/Fs and summation operator64 PCBs in Rome were, respectively: 1.1ngm(-3), 65fgWHO-TEQm(-3), 553pgm(-3). The background concentrations were, respectively: 0.016ngm(-3), 3fgWHO-TEQm(-3), and 94pgm(-3). Hence, BaP, and the other PAHs, showed the highest urban-background gradient (two orders of magnitude) and PCBs the lowest. The background pollution levels of BaP and PCDD/Fs were in agreement with the few available background/remote measurements in Europe. In Rome PAHs and PCBs, but not PCDD/Fs, were clearly seasonal; the PCDD/F TEQ was moderately correlated with BaP (P<0.001). At the background site, the seasonality of PAHs was less marked, while it could not be assessed for PCDD/Fs and PCBs. The PCB TEQ accounted for 4% and 15% of total (PCDD/Fs+PCBs) TEQ at the urban and background site, respectively. Mean PM(10) concentration was 54microgm(-3) in Rome and 15microgm(-3) at the background site.     

Isolation and Genomic Sequence of Hepatitis A Virus from Mixed Frozen Berries in Italy

Hepatitis A virus (HAV) was detected in two samples of mixed frozen berries linked to Italian hepatitis A outbreak in April and September 2013. Both viruses were fully sequenced by next-generation sequencing and the genomes clustered with HAV complete genomes of sub-genotype IA with nucleotide identities of 95–97 %.     

Heavy metals in agricultural soils from Piedmont,Italy. Distribution,speciation and chemometric data treatment

The distribution and speciation of heavy metals in five agricultural soils of Piedmont Region (north-western Italy) were investigated. Ten metals, namely Al, Cd, Cr, Cu, Fe, Mn, Ni, Pb, Ti and Zn were considered. Analytical determinations were performed by atomic emission or atomic absorption spectroscopy after microwave sample dissolution in acid solution. Total metal concentrations fit in the typical concentration ranges for unpolluted soils, with the exception of cadmium and lead content in some horizons. The effect of sampling depth on concentrations was discussed. Speciation studies were carried out by applying Tessier's procedure, which allows to subdivide the total metal content into five fractions, representing portions bound to different components of the soil. Moreover, the element labilities in two soils were evaluated by extraction with EDTA. Correlations among the variables and/or similarities among the sampling points were identified by principal component analysis and hierarchical cluster analysis.     

Bioavailability and degradation of phenanthrene in compost amended soils

Bioavailability in soil of organic xenobiotics such as phenanthrene is limited by mechanisms of diffusion of the xenobiotics within soil micropores and organic matter. The agricultural utilization of compost may reduce the risk connected to organic xenobiotic contamination by means of: (i) a reduction of the bioavailable fraction through an increased adsorption and (ii) an enhanced degradation of the remaining bioavailable fraction through an inoculum of degrading microorganisms. Aim of this work is to test this hypothesis by assessing the effects of compost amendment on the bioavailability and degradation of phenanthrene in soil. Experiments were carried out in both sterilized and non-sterilized conditions, and chemical and microbiological analyses were carried out in order to determine the extent of degradation and bioavailability and to monitor the evolution of the soil micro flora in time. Bioavailability was assessed in sterilized microcosms, in order to assess the physical effects of compost on aging processes without the influence of microbial degradation. Results showed that bioavailability is significantly reduced in soils amended with compost, although no differences were found at the 2 doses of compost studied. In non-sterilized soils the amount of phenanthrene degraded was always higher in the amended soils than in the non-amended one. Microbiological analyses confirmed the presence of a higher number of phenanthrene degraders in the amended soils and in samples of compost alone. These results suggest that compost induces the degradation in soils of easily degradable compounds such as phenanthrene, when the proper bacteria are in the compost; more resistant xenobiotics may instead be trapped by the compost organic matter, thus becoming less available.