Linking intra-seasonal variations in climate and tree-ring δC: A functional modelling approach

Stable carbon isotopic composition (δ¹³C) in tree rings is a widely recognized tool for climate reconstruction, and several works suggest that seasonal information can be extracted from intra-ring δ¹³C variations. In this study, we explored the link between climate and intra-seasonal oak ring δ¹³C using a process-based modelling approach. The ISOCASTANEA model was developed to compute the seasonal dynamics of tree-ring δ¹³C for deciduous species from half-hourly climatic data by accounting for photosynthetic discrimination and carbon translocation and allocation at the tree scale and in tree rings.The model was applied from March 2005 to December 2007 in a 150-year-old deciduous oak forest. Canopy photosynthesis and stomatal conductance were calibrated using H₂O and CO₂ fluxes measured by the eddy flux technique, and simulated δ¹³C values were compared to seasonal patterns of total organic matter δ¹³C measured in tree rings for 2006 and 2007 at the same site. With the inclusion of carbon translocation and with regard to ¹³C enrichment of starch compared to soluble sugars, the model can reasonably simulate the intra-seasonal and inter-annual variability of tree-ring δ¹³C using the same parameter values for 2006 and 2007. The amplitude of the seasonal carbon isotope pattern in tree rings was influenced by both photosynthetic and post-photosynthetic processes (starch enrichment and reserve use). The δ¹³C variations in the early part of the ring, i.e., mainly in the earlywood, were related mostly to carbohydrate metabolism, although diluted information about environmental conditions during the previous year could also be found. The last part of the ring, consisting mainly of latewood, was found to be a good recorder of current-year environmental conditions, in particular relative humidity, at a fine temporal resolution when the growth rate was high. The sensitivity of the δ¹³C in the early part of the ring to carbohydrate metabolism suggests that intra-ring δ¹³C could be used to explore the relationship between tree decline or mortality and carbohydrate deficiency.     

Choosing classes for size projection matrix models

Projection matrix models are intensely used in ecology to model the dynamics of structured populations. When dealing with size-structured populations, there is no satisfactory algorithm to partition size into discrete classes. We show that the Vandermeer-Moloney algorithm for choosing classes is inconsistent with the Usher model, and systematically selects the finest classes. Considering that the matrix model is a discrete approximation of a continuous model, we define an approximation error as the sum of a distribution error (the difference between the discrete distribution and its continuous counterpart), and a sample error. The optimal partition of size into classes is the one that minimizes the approximation error. This method for choosing classes also shows that the choice of the class width cannot be disconnected from the choice of the time step. When applied to 520 trees of Dicorynia guianensis in French Guiana, this algorithm identified 8 classes of 11.4 cm in width, which is in agreement with the empirical choice of foresters.     

Intra-sex vocal interactions in two hybridizing seabird species (Puffinus sp.)

Hybridization between two closely related species breeding in sympatry depends on the effectiveness of both inter-sex (sexual attraction) and intra-sex (competitors’ repulsion) components of communication. As birds primarily communicate acoustically, several studies have investigated interspecific vocal interactions between the sexes and their consequences on sympatric zones with a focus on songbird species. Here, we investigate these issues on intra-sex vocal interactions occurring during incubation in two non-songbird sister species, the Yelkouan Puffinus yelkouan and the Balearic Puffinus mauretanicus shearwaters. We compared the acoustical structure of calls and the behaviors obtained in response to same-sex Yelkouan and Balearic calls across allopatric parental populations from each species and a sympatric-hybridized population. Acoustic analyses showed that, for both sexes, calls have species-specific characteristics while hybrids have intermediate acoustic features compared to their parental species. Playback experiments showed that despite their vocal differences, both species interact and reply to each other. Remarkably, incubating Yelkouan and hybrid individuals resulted in equal intra-sex responses to either species while incubating Balearic birds led to lower territorial responses to Yelkouan than to conspecific calls. Moreover, incubating Balearic males less readily responded to same-sex Yelkouan calls than Balearic females. These results may have fitness consequences: Yelkouan birds, and especially males, would be more likely to win same-sex disputes against Balearic incubating birds than against Yelkouan incubating birds.     

Bird disturbance on conservation sites in Brittany (France): the standpoint of geographers

Bird disturbance by human activities is one of the impacts related to human presence at conservation sites in Brittany (France). This paper is an attempt at reviewing this relatively unknown problem through the results of an international bibliographical review and of a regional inquiry conducted in close collaboration with managers of the conservation areas in Brittany. These two approaches will help to demonstrate the extent and complexity of the human / fauna interactions, as well as to take stock of the state of research in this field and, last but not least, to highlight the difficulties managers of conservation sites are facing to deal with this new issue. For the managers, bird disturbance is indeed the most important impact related to human attendance on conservation sites in Brittany.     

Quantifying the dynamics of marine invertebrate metacommunities: What processes can maintain high diversity with low densities in the Mediterranean Sea?

The Mediterranean Sea hosts 5.6% of the world benthic invertebrate species on 0.82% of the ocean surface. Mediterranean ecosystems are also characterized by low densities (and biomasses) compared to other oceanic ecosystems, a feature often attributed to their oligotrophic environment. Oligotrophic conditions can induce lower growth rates and higher mortality rates, and a stronger competition for food between individuals. A theoretical model was developed in order to study the diversity vs. density patterns in coastal benthic invertebrate species. This model describes their minimal population dynamics including basic processes (growth, mortality, reproduction and effects of competitive interactions between individuals) and incorporating fluxes of larvae (finally recruited as juveniles) between a mosaic of local habitats. Populations are therefore structured in a metacommunity. The connectivity between local communities is ensured by passive pelagic larval dispersal. In the Mediterranean Sea, because of the microtidal regime, the connectivity between coastal habitats is lower and more variable than in macrotidal basins. Mathematical properties of the model revealed that competitive interactions (intra- and interspecific competitions) have a stabilizing effect on interacting organisms when gains by recruitment are higher than losses by mortality. In addition, low mortality rates and low connectivity which decreases negative local interactions maintains high regional species diversity with low local densities. This property suggested that oligotrophy cannot be the only factor leading to the high diversity–low density pattern observed in the Mediterranean Sea.     

A physical-microbial food web coupled model to study the evolution of the ecological functioning of a new reservoir after its flooding (Sep,Puy de Dôme)

The aim of this paper is to understand the temporal changes in planktonic populations and to highlight some important factors that control the biological functioning and evolution of a recently flooded reservoir, the Sep reservoir (Massif Central, France). To achieve this objective, a 1D vertical coupled physical–biological model was used and developed. It couples relevant physical processes (dispersion, advection and convection) with biological processes taking into account the complexity of interactions within the microbial food web, including the conventional grazing food chain with a microbial loop.     

Documenting lemming population change in the Arctic: Can we detect trends?

Lemmings are a key component of tundra food webs and changes in their dynamics can affect the whole ecosystem. We present a comprehensive overview of lemming monitoring and research activities, and assess recent trends in lemming abundance across the circumpolar Arctic. Since 2000, lemmings have been monitored at 49 sites of which 38 are still active. The sites were not evenly distributed with notably Russia and high Arctic Canada underrepresented. Abundance was monitored at all sites, but methods and levels of precision varied greatly. Other important attributes such as health, genetic diversity and potential drivers of population change, were often not monitored. There was no evidence that lemming populations were decreasing in general, although a negative trend was detected for low arctic populations sympatric with voles. To keep the pace of arctic change, we recommend maintaining long-term programmes while harmonizing methods, improving spatial coverage and integrating an ecosystem perspective.     

Assessing aboveground tropical forest biomass using Google Earth canopy images

Reducing Emissions from Deforestation and Forest Degradation (REDD) in efforts to combat climate change requires participating countries to periodically assess their forest resources on a national scale. Such a process is particularly challenging in the tropics because of technical difficulties related to large aboveground forest biomass stocks, restricted availability of affordable, appropriate remote-sensing images, and a lack of accurate forest inventory data. In this paper, we apply the Fourier-based FOTO method of canopy texture analysis to Google Earth's very-high-resolution images of the wet evergreen forests in the Western Ghats of India in order to (1) assess the predictive power of the method on aboveground biomass of tropical forests, (2) test the merits of free Google Earth images relative to their native commercial IKONOS counterparts and (3) highlight further research needs for affordable, accurate regional aboveground biomass estimations. We used the FOTO method to ordinate Fourier spectra of 1436 square canopy images (125 x 125 m) with respect to a canopy grain texture gradient (i.e., a combination of size distribution and spatial pattern of tree crowns), benchmarked against virtual canopy scenes simulated from a set of known forest structure parameters and a 3-D light interception model. We then used 15 1-ha ground plots to demonstrate that both texture gradients provided by Google Earth and IKONOS images strongly correlated with field-observed stand structure parameters such as the density of large trees, total basal area, and aboveground biomass estimated from a regional allometric model. Our results highlight the great potential of the FOTO method applied to Google Earth data for biomass retrieval because the texture-biomass relationship is only subject to 15% relative error, on average, and does not show obvious saturation trends at large biomass values. We also provide the first reliable map of tropical forest aboveground biomass predicted from free Google Earth images.     

Incompletely resolved phylogenetic trees inflate estimates of phylogenetic conservatism

The tendency for more closely related species to share similar traits and ecological strategies can be explained by their longer shared evolutionary histories and represents phylogenetic conservatism. How strongly species traits co-vary with phylogeny can significantly impact how we analyze cross-species data and can influence our interpretation of assembly rules in the rapidly expanding field of community phylogenetics. Phylogenetic conservatism is typically quantified by analyzing the distribution of species values on the phylogenetic tree that connects them. Many phylogenetic approaches, however, assume a completely sampled phylogeny: while we have good estimates of deeper phylogenetic relationships for many species-rich groups, such as birds and flowering plants, we often lack information on more recent interspecific relationships (i.e., within a genus). A common solution has been to represent these relationships as polytomies on trees using taxonomy as a guide. Here we show that such trees can dramatically inflate estimates of phylogenetic conservatism quantified using S. P. Blomberg et al.'s K statistic. Using simulations, we show that even randomly generated traits can appear to be phylogenetically conserved on poorly resolved trees. We provide a simple rarefaction-based solution that can reliably retrieve unbiased estimates of K, and we illustrate our method using data on first flowering times from Thoreau's woods (Concord, Massachusetts, USA).     

Bearded seal males perceive geographic variation in their trills

Geographic variation in animal vocalisations, ranging from micro- to macro-variations, has now been widely documented. These dialects can impair communication between separated groups or populations and thus may play a role in speciation processes. Although the existence of geographical variation has been already shown in some pinnipeds species, the extent to which individuals perceive it is poorly understood. Here, we studied this question in the bearded seal Erignatus barbatus, a species found across different arctic regions. As in other phocids, bearded seal males emit sophisticated acoustic displays while defending an aquatic territory during the breeding season. First, we used playbacks to demonstrate that the trill has a function in territorial defence. Second, we used synthetic trills from two distinct populations (Nunavut and Greenland), to show that bearded seal males perceived the geographic variation in the trills. Males from Greenland responded more strongly to trills from local males than those from a distant area (Nunavut). This study provides the first experimental evidence that phocid males can perceive geographic variation in their vocalisations. Acoustic analyses combined with playback experiments can help to identify distinct populations in bearded seals. This may then provide information on both strength and scale of breeding site fidelity in this and potentially other species.