Application of environmental DNA analysis to inform invasive fish eradication operations

Environmental DNA (eDNA) detection of non-native species has considerable potential to inform management decisions, including identifying the need for population control and/or eradication. An invasive species of European concern is the Asian cyprinid fish, topmouth gudgeon (Pseudorasbora parva). Here, eDNA analyses were applied at a commercial angling venue in southern England to inform operations aiming to eradicate P. parva, which had only ever been observed in one of the venue’s seven unconnected angling ponds. Eradication of P. parva was initially attempted by repeated depletion of the population using fish traps (crayfish traps fitted with 5 mm mesh netting) and the introduction of native predators over a 4-year period. The very low number of P. parva captured following these eradication efforts suggested a possible population crash. Conventional PCR analysis of water samples using species-specific primers was applied to all seven ponds to confirm that P. parva was present in only one pond, that the eradication attempt had indeed failed and that the species’ distribution in the pond appeared to be restricted to three bankside locations. The continued presence of P. parva at these locations was confirmed by subsequent trapping. Water samples from an adjacent, unconnected stream were also analysed using the eDNA methodology, but no DNA of P. parva was detected. The results suggest that further management action to eradicate P. parva be focused on the pond shown to contain the isolated P. parva population and thereby eliminate the risk of further dispersal. This study is the first to apply eDNA analysis to assess the efficacy of an eradication attempt and to provide evidence that the species was unlikely to be present in the other ponds, thus reducing the resources needed to control the species.     

Human maternal uniparental disomy for chromosome 16 and fetal development

Two severely growth-retarded fetuses found to have maternal uniparental disomy (UPD) for chromosome 16 and trisomy 16 placental mosaicism both had an unfavourable outcome. Antenatally, the first case was complicated by an unexplained raised maternal serum alpha-fetoprotein concentration, preterm premature rupture of the membranes, and growth retardation detectable at 21 weeks' gestation, whilst the other had an unexplained raised maternal serum human chorionic gonadotrophin level, a two-vessel cord on ultrasound, and cessation of growth at 25 weeks. At post-mortem, both babies had an imperforate anus. Fetal maternal UPD may explain the poor outcome that occurs in some cases of confined placental mosaicism for chromosome 16 and is also associated with specific fetal abnormalities.     

Divergence of carbon dioxide fluxes in different trophic areas of Taihu Lake,China

IntroductionCarbondioxide(CO2 )isaprincipalgreenhousegasandthereforetheirair waterexchangesareimportantproblemsinterrestrialecosystemsforclimatechangestudy(Frankignoulle ,1 998;Chimel,2 0 0 1 ) .ThedirectionofCO2 gasexchange(evasionorinvasion)isdependentonthedirectionoftheCO2concentrationgradientbetweentheairandthesurfacewater;themagnitudeoftheexchangedependsadditionallyonthegasexchangecoefficient,k.Alloflakesinland ,withitssmallareabutlargeatmosphericCO2 fluxrange ,playanimportantroleinev…     

Changes in body size, abundance, and energy allocation in rockfish assemblages of the northeast Pacific.

Fish body size, a key driver of many aspects of fish population biology and ecology, is affected by fisheries that deplete the largest individuals. Rockfish (genus Sebastes) are a diverse group that has been heavily fished on the U.S. West Coast in recent decades. We examined trawl survey data from 1980 to 2001 to determine spatial and temporal trends in body size and density of 16 shelf rockfish species, including six that are considered overfished. Mean individual mass and maximum observed mass declined in the majority of species in one or more zoogeographic regions between central California and Washington. Density changes were far more variable in time and space, but in all regions, density declines were most often associated with large-bodied rockfish. We next estimated the impact of size and density changes on energy consumption and fecundity in a five-species rockfish assemblage that includes bocaccio (S. paucispinis), a large-bodied, overfished species. Indexes of both consumption and fecundity by the assemblage increased in the southern portion of the study area between 1980 and 2001 but decreased in the northern portion. Allocation of energy and reproductive potential within the assemblage shifted dramatically: relative to bocaccio, total energy consumption and fecundity indexes for the other four species increased by orders of magnitude from 1980 to 2001. These changes in community structure may affect the ability of bocaccio and other large rockfish species to recover from overfishing, especially in light of long-term declines in zooplankton production that may also be affecting rockfish size and production. Addressing these issues may require a regional, multispecies management approach.     

A mixture of polychlorinated dibenzo-p-dioxins (PCDDs), dibenzofurans (PCDFs), and non-ortho polychlorinated biphenyls (PCBs) changed the lipid content of pregnant Long Evans rats

Pregnant Long Evans rats received 1.0 μg/kg of dioxin toxic equivalents (TEQ) by oral gavage on the 15th gestational day (GD 15), using a dosing mixture that contained two polychlorinated dioxins, four polychlorinated furans and three non-ortho polychlorinated biphenyls (PCBs). Rats were sacrificed on GD 16, GD 21 and postnatal day 4 (PND 4). The lipid content of fetus, pup, placenta and maternal liver, serum and adipose tissue were determined. Treated GD 16 and GD 21 fetuses had identical lipid content to the control group, yet the lipid content of treated pups on PND 4 was 32% higher than that of the control group. On the other hand, the lipid content of placenta, liver, and serum from the treated dams was 44–50%, 24%, and 38% lower than that of the control group, respectively. Thus, a low-dose mixture of dioxin-like compounds can cause changes in lipid content. The lipid content of offspring was not affected until they were exposed via lactation.     

Aerosol laser ablation mass spectrometry of suspended powders from PM sources and its implications to receptor modeling

Primary sources of particulate matter (PM) were analyzed by suspending powdered samples into an aerosol laser ablation mass spectrometer (LAMS). PM sources studied included vehicle exhaust particulates, dust from a non-ferrous smelter, cement powder, incinerator fly ash, two coal fly ash samples, and two soils. Marker peaks signified certain PM source sectors: construction particles could be distinguished by abundant Ca and Ca compounds, fuel combustion was marked by elemental carbon clusters, and nonferrous industrial particles showed inorganic As, Cu, Pb, Zn, and SOx. In addition to the distinction between particles from these different source sectors, mass spectral results also showed that for a single source, different particle types existed, and among different sources within a sector, similar spectra were present. The aerosol LAMS results show the difficulty in differentiating among separate fly ash sources as well as among different soil samples. A particle class balance receptor model that measures the amount of specific particle types rather than the amount of a chemical component is suggested as a means of source apportionment when particle spectra with overlapping source possibilities occur. The assumptions and limitations of receptor modeling aerosol LAMS data are also described. In particular, methods need to be developed to account for the contribution of secondary sources.     

Kinship and food availability influence cannibalism tendency in early-instar wolf spiders (Araneae: Lycosidae)

For potentially cannibalistic animals such as spiders, the ability to recognize and avoid kin and/or preferentially cannibalize non-relatives would permit exploiting conspecifics as prey while minimizing loss of inclusive fitness. We investigated the effects of relatedness and availability of alternative food on cannibalism tendency in pairs of juvenile Hogna helluo (Walckenaer), a North American wolf spider (Araneae: Lycosidae). For second-instar spiderlings (dispersing stage), cannibalism was more likely among pairs of non-sibs than pairs of sibs and, interestingly, was also more likely when other prey were available. We found no evidence of increased cannibalism in pairings involving broods of greatest average size disparity, indicating that size differences are unlikely to explain differences in cannibalism tendency. Additionally, the relative number of deaths from cannibalism or other causes did not increase with increasing risk of starvation. For third-instar spiderlings, which had lived independently of their mother and sibs following dispersal, cannibalism rates were very high in all treatments and there were no significant effects of relatedness or food availability. Our results suggest that spiders with predominantly solitary lifestyles may bias cannibalism toward non-kin during the juvenile associative period, and that this effect is lost in the subsequent instar. Results are discussed in the context of several potential mechanisms that might result in differential cannibalism.Communicated by M. Elgar     

MULTIVARIATE TREND TESTING OF LAKE WATER QUALITY1

ABSTRACT: Multivariate methods of trend analysis offer the potential for higher power in detecting gradual water quality changes as compared to multiple applications of univariate tests. Simulation experiments were used to investigate the power advantages of multivariate methods for both linear model and Mann-Kendall based approaches. The experiments focused on quarterly observations of three water quality variables with no serial correlation and with several different intervariable correlation structures. The multivariate methods were generally more powerful than the univariate methods, offering the greatest advantage in situations where water quality variables were positively correlated with trends in opposing directions. For illustration, both the univariate and multivariate versions of the Mann-Kendall based tests were applied to case study data from several lakes in Maine and New York which have been sampled as part of EPA's long term monitoring study of acid precipitation effects.     

THE ENVIRONMENTAL DISPLAY MANAGER: A TOOL FOR WATER QUALITY DATA INTEGRATION1

ABSTRACT: The Environmental Display Manager, EDM, is a development system on an IBM 3090 mainframe at the U.S. EPA National Computer Center in Research Triangle Park, North Carolina. EDM provides mapping, display, analysis support, and information management capabilities to workstations located across the United States, and connected to EPA through federal, state, academic, and private communications networks. Through interactive software, EDM can quickly support analyses, create maps and graphics, and generate reports that integrate millions of pieces of environmental data. The concept of EDM is to provide easy access to environmental information, to provide automated environmental analyses and reports, and then to provide data, graphics, images, text, and documents that can be used by numerous output devices, software packages, and computers. The mapping cumponent works with an electronic version of the 54,000 7.5 minute quad sheets of the U.S. Geological Survey. The software also works with a hydrographic data base of the surface waters of the United States. With the maps, a user can look at the rivers in any state, can zoom in on a small pond, and can overlay and identify particular features such as industrial waste dischargers and factories. The hydrography allows routing for modeling programs, identification of upstream and downstream components, and linkage of environmental features associated with surface waters. Alternatively, users can query data based on latitude/longitude, city name, EPA permit number, state agency and station code, river name or number, and river cataloging unit. The maps can be overlaid with roads and environmental sites such as: municipal and industrial dischargers, Superfund sites, public drinking water supplies, water quality monitoring stations, stream gages, and city locations. Retrievals from related systems can be performed for selected sites creating graphics showing water quality trends, discharge monitoring reports, and permit discharge limits.     

Anaerobic microbial degradation of poly (3-hydroxyalkanoates) with various terminal electron acceptors

The microbial degradation of poly (3-hydroxyalkanoates) (PHAs) under anaerobic conditions with various terminal electron acceptors was examined. Nitrate-reducing consortia were established using activated sludge, and PHAs were shown to be biodegradable under these conditions. A positive correlation between carbon dioxide production and nitrate reduction was demonstrated. Nitrous oxide accumulated as the main N-containing product of nitrate reduction. The amount of PHAs in activated sludge cultures decreased approximately 20% within 40 days of incubation. Attempts were made to establish iron- and sulfate-reducing consortia from spring water, yet it could not be demonstrated that the mixed cultures were capable of degrading PHAs. Pure cultures of iron- and sulfate-reducing bacteria could not utilize PHAs as sole carbon sources. Methanogenic environments sampled included pond sediment and rumen fluid. PHAs were fermented to methane and carbon dioxide after 10 weeks by a sediment consortium, with 43 to 57% of the substrate carbon transformed to methane. Although it could not be demonstrated that PHAs were biodegraded by a rumen fluid consortium, a facultative anaerobic bacterium, identified as aStaphylococcus sp., that could grow on PHAs was isolated from rumen fluid.