Breeding skylarks (Alauda arvensis) on organic and conventional arable farms in The Netherlands

The aim of this study was to analyse the effects of differences in cropping pattern between organic and conventional arable farms on the breeding activity of skylarks and to assess the effects of arable crop management on skylark nest survival. Skylark nest density was seven times higher on organic farms than on conventional farms (0.63 vs. 0.09 nest per 10 ha). Skylarks showed a strong preference for spring cereals, lucerne and grass leys, all of which were mainly or exclusively grown on organic farms. On organic farms nests were initiated during the entire breeding season, but on conventional farms no nesting activity was found during the peak of the season (early May to early June). On organic farms 27% of all nests was successful. Increasing the availability of suitable breeding habitat during the peak of the breeding season on conventional farms might provide one means of enhancing breeding skylark populations. On organic farms, crop management should focus on reducing nest loss due to farming operations.     

Life-cycle inventory for hydroelectric generation: a Brazilian case study

Representative Life-Cycle Inventories (LCIs) are essential for Life-Cycle Assessments (LCAs) quality and readiness. Because energy is such an important element of LCAs, appropriate LCIs on energy are crucial, and due to the prevalence of hydropower on Brazilian electricity mix, the frequently used LCIs are not representative of the Brazilian conditions. The present study developed a LCI of the Itaipu Hydropower Plant, the major hydropower plant in the world, responsible for producing 23.8% of Brazil's electricity consumption. Focused on the capital investments to construct and operate the dam, the LCI was designed to serve as a database for the LCAs of Brazilian hydroelectricity production. The life-cycle boundaries encompass the construction and operation of the dam, as well as the life-cycles of the most important material and energy consumptions (cement, steel, copper, diesel oil, lubricant oil), as well as construction site operation, emissions from reservoir flooding, material and workers transportation, and earthworks. As a result, besides the presented inventory, it was possible to determine the following processes, and respective environmental burdens as the most important life-cycle hotspots: reservoir filling (CO₂ and CH₄ emission; land use); steel life-cycle (water and energy consumption; CO, particulates, SO_x and NO_x emissions); cement life-cycle (water and energy consumption; CO₂ and particulate emissions); and operation of civil construction machines (diesel consumption; NO_x emissions). Compared with another hydropower studies, the LCI showed magnitude adequacy, with better results than small hydropower, which reveals a scale economy for material and energy exchanges in the case of Itaipu Power Plant.     

Assessment of Water Quality in a Border Region Between the Atlantic Forest and an Urbanised Area in Rio de Janeiro,Brazil

The preservation of water resources is one of the goals of the designation of parks that act as natural reservoirs. In order to assess the impact of the presence of humans in an environmental preservation area bordering urban areas, the presence of four pathogenic enteric viruses [group A rotavirus (RV-A), norovirus (NoV), human adenoviruses (HAdV), and hepatitis A virus (HAV)], as well as the physico-chemical parameters, and Escherichia coli levels were assessed in riverine water samples. From June 2008 to May 2009, monthly monitoring was performed along the Engenho Novo River. RV-A, NoV, and HAdV were observed in 29 % (31/108) of the water samples, with concentrations of up to 10³ genome copies/liter. The natural occurrence of infectious HAdV was demonstrated by Integrated Cell Culture-PCR (ICC-PCR). This study confirms the suitability of using the detection of fecal-oral transmitted viruses as a marker of human fecal contamination in water matrices and indicates the spread of pathogenic viruses occurring in an alleged area of environmental protection.     

All-in-one whole exome sequencing strategy with simultaneous copy number variant,single nucleotide variant and absence-of-heterozygosity analysis in fetuses with structural ultrasound anomalies: A 1-year experience

Objective

We performed a 1-year evaluation of a novel strategy of simultaneously analyzing single nucleotide variants (SNVs), copy number variants (CNVs) and copy-number-neutral Absence-of-Heterozygosity from Whole Exome Sequencing (WES) data for prenatal diagnosis of fetuses with ultrasound (US) anomalies and a non-causative QF-PCR result.

Methods

After invasive diagnostics, whole exome parent-offspring trio-sequencing with exome-wide CNV analysis was performed in pregnancies with fetal US anomalies and a non-causative QF-PCR result (WES-CNV). On request, additional SNV-analysis, restricted to (the) requested gene panel(s) only (with the option of whole exome SNV-analysis afterward) was performed simultaneously (WES-CNV/SNV) or as rapid SNV-re-analysis, following a normal CNV analysis.

Results

In total, 415 prenatal samples were included. Following a non-causative QF-PCR result, WES-CNV analysis was initially requested for 74.3% of the chorionic villus (CV) samples and 45% of the amniotic fluid (AF) samples. In case WES-CNV analysis did not reveal a causative aberration, SNV-re-analysis was requested in 41.7% of the CV samples and 17.5% of the AF samples. All initial analyses could be finished within 2 weeks after sampling. For SNV-re-analysis during pregnancy, turn-around-times (TATs) varied between one and 8 days.

Conclusion

We show a highly efficient all-in-one WES-based strategy, with short TATs, and the option of rapid SNV-re-analysis after a normal CNV result.     

Portrait of an Asian stalk-eyed fly

Diopsid flies have eyes set on stalks which are in some cases so long that the distance between the eyes exceeds the body length. These conspicuous structures have given rise to much speculation about their adaptive value, but there are very few actual observations by which to judge these hypotheses.Cyrtodiopsis whitei Curran lives in the tropical rainforest of Malaysia. We describe a number of aspects of its morphology and biology, some functional properties of the eye, and the ritualized fights between males, by which harems are acquired. The evolutionary significance of the eyestalks is discussed: they represent structures subjected to a double selection pressure; they are an adaptation by which a sensory system is better matched to the special problems encountered in a densely structured habitat (in that the field of view is extended and the ability to estimate distance and size and to identify objects at a large distance is improved), also they act as key stimulus for species recognition and as releaser for intraspecific behaviour.     

Model evaluation of different mechanisms driving freeze–thaw N2O emissions

N₂O emissions from soil contribute significantly to global warming. Pulse emissions of N₂O from soils during freeze-thawing were recently recognized as important atmospheric sources. In this modelling study we explore three different hypotheses for explaining freeze–thaw related N₂O emissions: (1) soil frost or snow cover may reduce gas diffusion and create anaerobic conditions that stimulate N₂O production via denitrification, (2) microbes that die of frost deliver easy decomposable organic carbon and nitrogen to the soil, which stimulates microbial growth and vigorous N₂O production during freeze–thaw, and (3) the enzyme nitrous oxide reductase, which is responsible for the reduction of N₂O to N₂ during denitrification, is more sensitive to low temperatures than other enzymes, so that N₂O becomes the dominating end-product of denitrification at low temperatures. These hypotheses were tested with a biogeochemical model that combines hydrology and physics calculations with a newly developed, parameter-poor biochemistry module. The model was first calibrated with field datasets on soil–atmosphere fluxes of N₂O, NO and CO₂ and soil NO₃ and NH₄ concentrations that were measured in a spruce forest in Southeast Germany in the years 1994–1997. Subsequently, additional model mechanisms were implemented that allow the model to describe the outlined mechanisms potentially driving freeze–thaw N₂O fluxes. After each implementation the model was recalibrated. We were able to mimic dimension and timing of high N₂O emissions when either one of the first two hypotheses were assumed, but found no confirmation for the third. The best model fit was achieved by combining hypothesis one and two, indicating that freeze–thaw N₂O emissions are not mono-causal.     

ARX modeling approach to leak detection and diagnosis

This work presents a time series strategy for detection, location and quantification of leaks in large pipeline systems. The technology has two active components, which operate sequentially: the Detector and the Localizer. The Detector continuously screens real-time data, searching for any anomalies such as leaks, which are detected (or not) depending on their size and position. The Detector is based on auto-regressive multi-input/multi-output (MIMO) ARX predictors with one input filter. Subsequent to successful leak detection, the Localizer is launched to diagnose the leak via estimation of its parameters – diameter and location – using recorded data on a Search Time Window that includes information in the neighborhood of the instant of detection. The Localizer is also an ARX predictor, but with two input processors, the first is a filter for dynamic plant inputs and the second filter processes “parameter signals” of active leaks. The Localizer is developed beforehand via model identification with plant data under the action of known, artificially simulated, leaks. It is, therefore, able to recognize an active pattern of leak parameters, by maximizing the adherence of its predictions to data in the Search Time Window. The proposed detection and location methods were successfully tested in simulated leak scenarios for an industrial naphtha pipeline.     

Eco-industrial park initiatives in the USA and the Netherlands: first lessons

Since the introduction of the industrial ecology concept by Frosch and Gallopoulos in 1989, and the apparent success of the Kalundborg Industrial Symbiosis project, attention to planned eco-industrial park (EIP) development projects has grown all over the world. This article includes data from six of these EIP development projects. Three of the projects discussed are located in the Netherlands and three in the US. This article compares the differences in project approach and results on a national level. The approach suggested is derived from the available EIP development literature.Initial research indicates that the Dutch EIP projects are more successful than their US counterparts. This difference in success can be, mostly, attributed to the fact that the US projects are initiated by local and regional governments that see the project as a way to improve the local/regional economy with access to substantial government funds. Because of this heavy government involvement, US companies are, in general, not interested in the project. The more successful Dutch projects, on the other hand, are mostly initiated by the companies themselves with financial and advisory support from the local and regional government.     

A unique strategy of host colony exploitation in a parasitic ant: workers of<Emphasis Type="Italic"> Polyrhachis lama</Emphasis> rear their brood in neighbouring host nests

The formicine ant Polyrhachis lama is a social parasite, exploiting its ponerine host ant species Diacamma sp. In most social parasitic associations, the parasitic species are closely related to their host species group, evolving directly from independent ancestors of the host species. However, in the Polyrhachis lama–Diacamma sp. association, the associated species belong to different ant subfamilies. Based on preliminary field surveys, we had presumed that P. lama might have given up its reproductive division of labour, i.e. workers would be able to produce males as well as workers and females parthenogenetically. In this study, this hypothesis was disproved: Polyrhachis lama workers cannot be fertilized and are only able to produce males. In the host–parasite association originating from nests possessing a P. lama queen, workers penetrate surrounding Diacamma sp. nests, carrying brood for rearing within these satellite nests. In this peculiar way, a single P. lama colony is able to exploit several Diacamma sp. colonies simultaneously.