Cloning and expression analysis of geosmin synthase gene from Aphanizomenon gracile北大核心CSCD

Geosmin is a secondary metabolite responsible for earthy odors. The occurrence of geosmin has great impact on the quality of water environment. The gene essential for geosmin biosynthesis have been identified in several species. But little is known about the mechanism of geosmin synthesis in Aphanizomenon gracile. This study attempted to clone the gene involved in geosmin biosynthesis of Aphanizomenon gracile a nd a nalyze t he geosmin production u nder d ifferent e nvironments. T he high-efficiency thermal asymmetric interlaced PCR (hiTAIL-PCR) was used to amplify the full-length of geosmin synthase gene from Aphanizomenon gracile (WH-1). Real time PCR (RT-PCR) was applied to quantify the geosmin production in different light and temperature. As a result, geo, a geosmin synthase gene from Aphanizomenon gracile (WH-1) was cloned by hiTAIL-PCR. The full-length open reading frame (ORF) of geo was 2 262 bp, coding for a protein of 753 amino acids. Meanwhile, WH-1 was treated with different environment conditions and mRNA expression levels of geo were quantified by RT-PCR. It was found that low temperature (15 °C), high light intensity (35 μmol m-2 s-1) and continuous light illumination were beneficial to the expression of geo. The successful amplification of geosmin synthase gene verified that hiTAIL-PCR is an effective and simple procedure of low cost. The result provides fundamental knowledge on the monitoring and prevention for odorants.     

Adsorption of basic dye from aqueous solution onto fly ash

The fly ash treated by H₂SO₄ was used as a low-cost adsorbent for the removal of a typical dye, methylene blue, from aqueous solution. An increase in the specific surface area and dye-adsorption capacity was observed after the acid treatment. The adsorption isotherm and kinetics of the treated fly ash were studied. The experimental results were fitted using Langmuir and Freundlich isotherms. It shows that the Freundlich isotherm is better in describing the adsorption process. Two kinetic models, pseudo-first order and pseudo-second order, were employed to analyze the kinetic data. It was found that the pseudo-second-order model is the better choice to describe the adsorption behavior. The thermodynamic study reveals that the enthalpy (ΔH⁰) value is positive (5.63 kJ/mol), suggesting an endothermic nature of the adsorption.     

Fungal bioconversion of 2,4-dichlorophenoxyacetic acid (2,4-D) and 2,4-dichlorophenol (2,4-DCP)

Ninety strains of fungi from the collection of our mycology laboratory were tested in Galzy and Slonimski (GS) synthetic liquid medium for their ability to degrade the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D) and its by-product, 2,4-dichlorophenol (2,4-DCP) at 100 mg l(-1), each. Evolution of the amounts of each chemical in the culture media was monitored by HPLC. After 5 days of cultivation, the best results were obtained with Aspergillus penicilloides and Mortierella isabellina for 2,4-D and with Chrysosporium pannorum and Mucor genevensis for 2,4-DCP. The data collected seemed to prove, on one hand, that the strains responses varied with the taxonomic groups and the chemicals tested, and, on the other hand, that 2,4-D was less accessible to fungal degradation than 2,4-DCP. In each case, kinetics studies with the two most efficient strains revealed that there was a lag phase of 1 day before the onset of 2,4-D degradation, whereas there was none during 2,4-DCP degradation. Moreover, 2,4-DCP was detected transiently during 2,4-D degradation. Finally, M. isabellina improved its degradation potential in Tartaric Acid (TA) medium relative to GS and Malt Extract (ME) media.     

Assessment of global industrial-age anthropogenic arsenic contamination

Arsenic, a carcinogenic trace element, threatens not only the health of millions of humans and other living organisms, but also global sustainability. We present here, for the first time, the global industrial-age cumulative anthropogenic arsenic production and its potential accumulation and risks in the environment. In 2000, the world cumulative industrial-age anthropogenic arsenic production was 4.53 million tonnes. The world-wide coal and petroleum industries accounted for 46% of global annual gross arsenic production, and their overall contribution to industrial-age gross arsenic production was 27% in 2000. Global industrial-age anthropogenic As sources (as As cumulative production) follow the order: As mining production >As generated from coal >As generated from petroleum. The potential industrial-age anthropogenic arsenic input in world arable surface in 2000 was 2.18 mg arsenic kg^–1, which is 1.2 times that in the lithosphere. The development of substitute materials for arsenic applications in the agricultural and forestry industries and controls of arsenic emissions from the coal industry may be possible strategies to significantly decrease arsenic pollution sources and dissipation rates into the environment.     

An automated (novel) algorithm for estimating green vegetation cover fraction from digital image: UIP-MGMEP

Green vegetation cover fraction (VCF) is an important indicator of vegetation status in ecology and agronomy. Digital image analysis (DIA) has been widely accepted as a new VCF measurement technique. In this study, we present a novel fully automatic threshold segmentation algorithm for VCF measurements, which is named as upper inflection point plus mean gradient magnitude of edge pixels (UIP-MGMEP). The algorithm performs VCF estimation upon the vegetation index Excess Green (EXG). UIP-MGMEP optimizes the EXG threshold by searching the upper inflection point (UIP) of the M-Et curve (mean gradient magnitude of edge pixels (MGMEP) vs. EXG threshold), based on the assumption that EXG variance of the boundary pixels between vegetation and background is larger than the variance of the background. Five typical sample images are used to illustrate how ground complexity reduces the distinctness of the UIP. Three controlled experiments are illustrated to test the robustness of UIP-MGMEP to resolution, exposure, and ground complexity. The results show that UIP-MGMEP is a promising algorithm for automatic VCF estimation upon digital images. Compared to broad-leaved grass, narrow-leaved grass is more sensitive to resolution and exposure. To reduce ground complexity, smaller footprint size while more images to cover the same area may be better than one image with large footprint size. UIP-MGMEP is fully automatic, making it promising for batch processing of VCF measurements that is very difficult in any wide-range field survey in the past. UIP-MGMEP algorithm can only extract green vegetation and is not suitable for non-green (even grayish-green) vegetation, due to the limits of vegetation index EXG. In addition, UIP-MGMEP is not recommended for images with VCF less than 0.5% or greater than 99.5%.     

Assessing relative vulnerability to sea-level rise in the western part of the Mekong River Delta in Vietnam

The Mekong River Delta in Vietnam plays a crucial role for the region in terms of food security and socioeconomic development; however, it is one of the most low-lying and densely populated areas in the world. It is vulnerable to seawater incursion, flood risk, and shoreline change, exacerbated as a consequence of sea-level rise (SLR) related to climate change. This study examined the Kien Giang coast in the western part of the delta, comprising seven coastal districts (namely Ha Tien, Kien Luong, Hon Dat, Rach Gia, Chau Thanh, An Bien, and An Minh), the economy of which is important in terms of agriculture and aquaculture. The analytical hierarchical process (AHP) method of multi-criteria decision making was integrated directly into geographic information systems (GIS) to derive a composite vulnerability index that indicated areas most likely to be vulnerable to SLR. The hierarchical structure comprised three key components: exposure (E), sensitivity (S), and adaptive capacity (A), at level 1. At the next level, 8 sub-components were mapped: seawater incursion, flood risk, shoreline change, population characteristics, land use/land cover, and socioeconomic, infrastructure, and technological capability, beyond which a further 22 variables (level 3) and 24 sub-variables (level 4) related to vulnerability were also mapped. Variables were assigned weights for incorporation into AHP pairwise comparisons after discussion with stakeholders. Maps were generated to visualise areas where the relative vulnerability was very low, low, moderate, high, and very high. Societal data were generally only available at district level; however, several regional patterns emerged. Relatively high exposure to flooding and inundation, salinity, and moderate loss of mangroves occurred along the coastal fringe of each district. This western section of the delta, which is low-lying and remote from the distributaries that carry sediment to the coast, appears to be particularly vulnerable. The most sensitive areas tended to be ethnic households engaged in rice cultivation and with moderate population density. The least adaptable areas consisted of high numbers of poor households, with low income, and moderate densities of transport, irrigation and drainage systems. Most coastal districts were determined to be moderately to relatively highly vulnerable, with scattered hotspots along the coast.     

Changes in CO2 flux for different recovery processes of desertification in the alpine meadows of Northwest Sichuan北大核心CSCD

Desertification has emerged as a serious threat to the alpine meadows of Northwest Sichuan in recent decades. Artificial vegetation had certain effects on desertification recovery, while how the CO2 flux changed and its reasons are still unclear. During the growing season in 2016 (i.e., from July to September), we selected the desertified alpine meadows with different recovery degrees, including the early stage of restoration, the middle stage of restoration, the late stage of restoration, and control (the unrecovered desertification meadow) as four transects. CO2 flux was measured by the instrument LI-8100, and the microenvironment factors that affected CO2 flux changes were analyzed. The results showed that the carbon sequestration function of desertified alpine meadows gradually increased with the degree of recovery. Net ecosystem exchange (NEE) were -1.61, -3.55, and -4.38 μmol m-2 s-1 in the early, mid-term, and late transects, respectively, and the most dramatic changes occurred from the early stage to mid-term stage, increasing by 120.50%. Both ecosystem respiration (ER) and soil respiration (SR) were enhanced significantly with restoration (P < 0.05). In mid or late July, NEE, ER, and SR reached their maximum values, and thereafter, the indicators varied to near zero (P < 0.05). During the whole growing season, the daily dynamic in CO2 flux for the control alpine meadow was mild and retained the trend of continuous release all day, but that in the desertified alpine meadow was a single peak pattern. Moreover, with restoration process, the peak of CO2 flux increased and reached a peak in the late stage of the recovery process. The regression analysis showed that there was a significant positive correlation between CO2 flux and vegetation coverage, aboveground biomass, and soil moisture (0-5 cm) (P < 0.01), and a weak correlation with 0-5-cm soil temperature (P < 0.01). This indicates that topsoil moisture (5 cm) is a more significant factor for CO2 flux than topsoil temperature during the growing season in the restoration of desertified alpine meadows in Northwest Sichuan. In general, the vegetation recovery significantly improved the carbon-sequestration ability of the desertified alpine meadows during the growing season in Northwest Sichuan, and at the middle stage of restoration, the carbon-sequestration ability improved significantly due to vegetation restoration and increase in topsoil (0-5 cm) moisture. © 2018 Science Press. All rights reserved.     

Organochlorine and butyltin residues in walleye pollock (Theragra chalcogramma) from Bering Sea, Gulf of Alaska and Japan Sea

Persistent organochlorine (OC) and toxic butyltin compounds (BTs) were determined in walleye pollock (Theragra chalcogramma) collected from Gulf of Alaska, Bering Sea and Japan Sea, during 1991 and 1992. Polychlorinated biphenyls (PCBs) and dichlorodiphenyltrichloroethane (DDTs) and its metabolites were the most abundant compounds ranging up to 3200 and 2500 ng/g on lipid weight, respectively, followed by chlordane compounds (CHLs), hexachlorocyclohexane isomers (HCHs) and hexachlorobenzene (HCB) in the liver of walleye pollock. Concentrations of HCHs and HCB in walleye pollock from these remote areas were higher than those in fishes from the western North Pacific and Japanese coastal waters, indicating atmospheric transport of these compounds to higher latitude regions such as Bering Sea and Gulf of Alaska and/or local input around northern Japan Sea. The concentrations of other OCs were generally comparable to those in fishes from North Pacific Ocean and Japanese waters but significantly lower than in cod-like fishes from North Atlantic and European countries. Among sampling locations, walleye pollock from Japan Sea showed higher concentrations of DDTs and HCHs compared to fishes from Bering Sea and Gulf of Alaska, suggesting greater input of these compounds around Japan Sea. Slower declining trend of DDTs and CHLs and an increasing pattern of PCBs concentrations were found in walleye pollock from Bering Sea during 1982-1992. This may imply a continuous input of these compounds by long-range transport and/or long-term persistency in these cold regions. Compared to the fishes from Japan Sea, walleye pollock from Bering Sea and Gulf of Alaska showed higher proportions of alpha-HCH and p,p'-DDE in the composition of HCH isomers and DDT compounds, respectively. This suggests selective transportability of these compounds during long-range transport to higher latitude remote areas. Concentrations of tributyltin (TBT) in the muscle of walleye pollock ranged from 1.1 to 5.5 ng/g on wet weight. Concentrations of TBT in deep-sea walleye pollock from Gulf of Alaska and Bering Sea were lower than those in Japan Sea.     

White spruce response to co-composted hydrocarbon-contaminated drilling waste: effects of compost age and nitrogen fertilization

There are growing interests to use co-composted drilling wastes contaminated with hydrocarbons as growth media for planting in land reclamation. However, such use of the compost may have potential problems such as inherent toxicity of residual hydrocarbon and microbial N immobilization due to high compost C to N ratios. We investigated the growth, biomass production, N uptake, and foliar delta13C of white spruce (Picea glauca [Moench] Voss) seedlings in a pot experiment using 1-, 2-, 3-, and 4-yr-old composts (with different hydrocarbon concentrations and C to N ratios) and a local noncontaminated soil with (200 kg N ha(-1)) or without N fertilization. Growth and N content of seedlings (particularly N content in roots) were lower when grown in the compost media as compared with those grown in the soil. Within the compost treatments seedling growth was affected by compost age, but the magnitude of growth reduction was not linearly proportional to hydrocarbon concentrations. Plant N uptake increased with compost age, which corresponds with an increase in indigenous mineral N concentration. Effects of N fertilization on N uptake were curtailed by the presence of indigenous mineral N (e.g., in the 4-yr-old compost) and by fertilization-induced stimulation of microbial activities (e.g., in the 1-yr-old compost). The differences in foliar delta13C values between seedlings grown in compost and soil (P < 0.05) suggest that limitations on water uptake caused by the residual hydrocarbon might have been the predominant factor limiting seedling growth in the compost media. This study suggests that water stress caused by residual hydrocarbons may be a critical factor for the successful use of co-composted drilling wastes as a growth medium.     

Influences of chemical activators on incinerator bottom ash

This research has applied different chemical activators to mechanically and thermally treated fine fraction (<14 mm) of incinerator bottom ash (IBA), in order to investigate the influences of chemical activators on this new pozzolanic material. IBA has been milled and thermally treated at 800 degrees C (TIBA). The TIBA produced was blended with Ca(OH)(2) and evaluated for setting time, reactivity and compressive strength after the addition of 0.0565 mole of Na(2)SO(4), K(2)SO(4), Na(2)CO(3), K(2)CO(3), NaOH, KOH and CaCl(2) into 100g of binder (TIBA+Ca(OH)(2)). The microstructures of activated IBA and hydrated samples have been characterized by X-ray diffraction (XRD) and thermogravimetry (TG) analysis. Thermal treatment is found to produce gehlenite (Ca(2)Al(2)SiO(7)), wollastonite (CaSiO(3)) and mayenite (Ca(12)Al(14)O(33)) phases. The thermally treated IBA samples are significantly more reactive than the milled IBA. The addition of Na(2)CO(3) can increase the compressive strength and calcium hydroxide consumption at 28-day curing ages. However, the addition of Na(2)SO(4), K(2)SO(4), K(2)CO(3), NaOH and KOH reduces the strength and hydration reaction. Moreover, these chemicals produce more porous samples due to increased generation of hydrogen gas. The addition of CaCl(2) has a negative effect on the hydration of TIBA samples. Calcium aluminium oxide carbonate sulphide hydrate (Ca(4)Al(2)O(6)(CO(3))(0.67)(SO(3))(0.33)(H(2)O)(11)) is the main hydration product in the samples with activated IBA, except for the sample containing CaCl(2).