Three-dimensional hydrodynamic modeling of the Chicago River, Illinois

We present and describe results from a three-dimensional model applied to the Chicago River under a wet weather condition. Chicago River is an integral part of Chicago, the third largest city in United States, for recreational, commercial and industrial purposes. Although the flow in the Chicago River is supposed to be from north to south, the flow acquires a three-dimensional nature at various points in the river. The reasons for the three dimensionality of the flow can be attributed to the dynamic boundary conditions generated by combined sewer overflow (CSO) events during wet weather conditions, as well as the presence of confluences of various branches of the river with creeks and slips. This work presents the hydrodynamic application and validation of a three dimensional numerical model, which was used to simulate the flow in the Chicago River for a period of 8?days in September of 2008, during which the torrential rains in the city of Chicago led to intense CSO events. The numerical model used for the aforementioned exercise is the Environmental Fluid Dynamics Code (EFDC) which solves the three dimensional vertically hydrostatic, free surface, turbulence averaged equations of motions for a variable density fluid. The results obtained by the numerical model were validated with the help of stage values obtained from the USGS gauging station [Station No. 05536123] present inside the domain of interest. It was estimated that during the storm September 2008, several billion gallons of water were discharged into Lake Michigan from the Chicago River Controlling Works to prevent city flooding. The 3D model also provides a tool for the management of the waterways, in particular for future analysis of different alternatives being considered to reverse the Chicago River once again with the goal of preventing the passage of invasive species (e.g. Asian carp) towards the Great Lakes.     

Time and space: genetic structure of the cohorts of the common sea urchin <Emphasis Type="Italic">Paracentrotus</Emphasis><Emphasis Type="Italic">lividus</Emphasis> in Western Mediterranean

Spatio-temporal variability in settlement and recruitment, high mortality during the first life-history stages, and selection may determine the genetic structure of cohorts of long-lived marine invertebrates at small scales. We conducted a spatial and temporal analysis of the common Mediterranean Sea urchin Paracentrotus lividus to determine the genetic structure of cohorts at different scales. In Tossa de Mar (NW Mediterranean), recruitment was followed over 5 consecutive springs (2006–2010). In spring 2008, recruits and two-year-old individuals were collected at 6 locations along East and South Iberian coasts separated from 200 to over 1,100 km. All cohorts presented a high genetic diversity based on a fragment of mtCOI. Our results showed a marked genetic homogeneity in the temporal monitoring and a low degree of spatial structure in 2006. In 2008, coupled with an abnormality in the usual circulation patterns in the area, the genetic structure of the southern populations studied changed markedly, with arrival of many private haplotypes. This fact highlights the importance of point events in renewing the genetic makeup of populations, which can only be detected through analysis of the cohort structure coupling temporal and spatial perspectives.     

Heterologous overexpression of Populus euphratica BAK1;1 gene enhanced resistance to Pst DC3000 in tobacco北大核心CSCD

BRI1-ASSOCIATED RECEPTORKINASE1(BAK1), a leucine-rich repeat (LRR) receptor protein kinase, plays a significant role in brassinosteroid (BR) signaling. Furthermore, it combines with other LRR-RLKs protein to initiate immune response in plants. The objective of this study was to (1) investigate the function of the Populus euphratica BAK1;1 gene in the resistance of transgenic tobacco to Pseudomonas syringae pv. tomato DC3000 (Pst DC3000) and (2) discuss the regulation pathway of PeBAK1;1 involved in the resistance to plant pathogen. We cloned the cDNA sequence of the P. euphratica PeBAK1;1 gene, constructed the pBI121-35S::PeBAK1;1 over-expression vector, and then transformed it into wild-type tobacco by Agrobacterium-mediated transformation to obtain PeBA K 1;1-overexpressing transgenic tobacco plants. The bioinformatic analysis showed that the PeBAK1;1 protein contained all the structural features of the plant SERK family. The phylogenetic tree showed that PeBAK1;1 has the highest sequence homology with PtBAK1. The gene expression profile results indicated that the expression of PeBAK1;1 in the root was higher than that in the leaf and stem. The wild-type tobacco plants showed an obvious susceptibility to Pst DC3000, whereas the transgenic plants exhibited enhanced resistance to Pst DC3000. Compared with that of the wild-type (WT), the real-time PCR and quantitative real-time PCR analysis revealed that the expression of pathogenesis-related genes (including PR1, PR3, PR4, and PR5), BAK1-interacting receptor kinase 1 gene, and BONZAI1 gene was upregulated in 35S::PeBAK1;1 transgenic tobacco plants. In conclusion, the PeBAK1;1 gene plays a positive regulatory role in 35S::PeBAK1;1 transgenic tobacco against Pst DC3000, which can enhance the resistance of plants to pathogen. © 2018 Science Press. All rights reserved.     

Tolerance of the black soldier fly,Hermetia illucens (Diptera: Stratiomyidae) to pH value,pungency, and NaCl in foodstuffs北大核心CSCD

The black soldier fly (BSF), Hermetia illucens, has been considered impressive as a saprophagous insect, for its high ability to convert organic waste to insect protein and oil. Hence, it has been regarded by the municipal administration that BSF might be used as a medium to deal with food waste. However, food waste in China has been characterized as having a high salt content, oily, and very spicy, which usually renders them unsuitable for animal feeding. In order to assess the technological reliability for BSF conversion of food waste, the tolerance of BSF for pH values, pungency, and NaCl in food were investigated in this case. Results indicated that strong acidity (pH = 3) was not good for the development of BSF, demonstrating less body weight and eclosion failure. In contrast, strong basicity (pH = 11) seemed to be beneficial for larval development with high biomass, and there is no difference in pupation, eclosion, larval biomass, and livability for BSF for pH values between 5 and 11. With regards to salinity, liner correlations were observed; the salinity strength increased along with the extension of the larval phase, but body weight, pupation rate, emerging rate, and livability were still consistent under 6% density of salinity. Influence of pungency on BSF larvae has not yet been found. In conclusion, BSF showed a high tolerance to pH value, pungency, and salinity in foodstuffs. Hence, it is expected that food waste from common environments might have a lesser possibility to cause negative effects on BSF development, which could be good news for BSF conversion technology. As for the process design, the conclusion suggested that food waste optimum for BSF is expected to be alkaline and low-salt, which would be helpful to improve the efficiency and harvest. © 2018 Science Press. All rights reserved.     

Mycelial culture of wild Inonotus hispidus parasitizing the jujube tree and the cultivation conditions of its fruit body on rice medium北大核心CSCD

Inonotus hispidus is a kind of rare medicinal fungus, and its natural resources are very scarce. Currently, the artificial cultivation technology of I. hispidus is not completely developed, and this reflects on its extremely low biological conversion rate and long cultivation period. In order to improve the bioconversion rate and shorten the production cycle of I. hispidus, we first analyzed the mycelia culture conditions of the collected I. hispidus, and then we further explore the method of domesticated cultivation of its fruiting body in rice medium. During the process of mycelial culture, the suitable temperature, pH, carbon source, and nitrogen source for mycelial growth were selected using the mycelial growth rate as index. During the domesticated cultivation of the fruiting body, the suitable culture medium for its growth was selected using the bioconversion rate as index. Screening results of mycelial culture conditions showed that the optimal culture conditions for the growth of mycelium of the wild I. hispidus were: temperature of 25 °C, initial pH of 6.0, glucose as the carbon source, and yeast extract powder as the source of nitrogen. The results of the domesticated cultivation showed that the biotransformation rate of I. hispidus was higher when using rice as the main medium substrate. The optimal cultivation conditions were: a 0.2% yeast extract content in the nutrient solution, a 1:1.6 ratio of rice to nutrient solution, and a 4 mL inoculum of the liquid strain. Under these conditions, it took about 4 days for the mycelium to grow over the cultivation medium. The time required for the differentiation of the primordium to form fruit bodies was about 20 days, and the bioconversion rate reached 28.70% ± 5.05%. The results of this study indicate the feasibility of using rice as the main substrate for the cultivation of I. hispidus, and it also provide new insights for the finding of new cultivation substrates for other rare medicinal fungi. © 2018 Science Press. All rights reserved.     

Changes in CO2 flux for different recovery processes of desertification in the alpine meadows of Northwest Sichuan北大核心CSCD

Desertification has emerged as a serious threat to the alpine meadows of Northwest Sichuan in recent decades. Artificial vegetation had certain effects on desertification recovery, while how the CO2 flux changed and its reasons are still unclear. During the growing season in 2016 (i.e., from July to September), we selected the desertified alpine meadows with different recovery degrees, including the early stage of restoration, the middle stage of restoration, the late stage of restoration, and control (the unrecovered desertification meadow) as four transects. CO2 flux was measured by the instrument LI-8100, and the microenvironment factors that affected CO2 flux changes were analyzed. The results showed that the carbon sequestration function of desertified alpine meadows gradually increased with the degree of recovery. Net ecosystem exchange (NEE) were -1.61, -3.55, and -4.38 μmol m-2 s-1 in the early, mid-term, and late transects, respectively, and the most dramatic changes occurred from the early stage to mid-term stage, increasing by 120.50%. Both ecosystem respiration (ER) and soil respiration (SR) were enhanced significantly with restoration (P < 0.05). In mid or late July, NEE, ER, and SR reached their maximum values, and thereafter, the indicators varied to near zero (P < 0.05). During the whole growing season, the daily dynamic in CO2 flux for the control alpine meadow was mild and retained the trend of continuous release all day, but that in the desertified alpine meadow was a single peak pattern. Moreover, with restoration process, the peak of CO2 flux increased and reached a peak in the late stage of the recovery process. The regression analysis showed that there was a significant positive correlation between CO2 flux and vegetation coverage, aboveground biomass, and soil moisture (0-5 cm) (P < 0.01), and a weak correlation with 0-5-cm soil temperature (P < 0.01). This indicates that topsoil moisture (5 cm) is a more significant factor for CO2 flux than topsoil temperature during the growing season in the restoration of desertified alpine meadows in Northwest Sichuan. In general, the vegetation recovery significantly improved the carbon-sequestration ability of the desertified alpine meadows during the growing season in Northwest Sichuan, and at the middle stage of restoration, the carbon-sequestration ability improved significantly due to vegetation restoration and increase in topsoil (0-5 cm) moisture. © 2018 Science Press. All rights reserved.     

Community structure and biotic integrity of aquatic plants along the North Canal in Beijing北大核心CSCD

Aquatic plants along the North Canal in Beijing were studied to identify the community structure of aquatic plants and vegetation index of biotic integrity (VIBI), and to provide scientific basis for the management and protection of urban rivers. Aquatic plants from 49 sampling sites along the North Canal were investigated during June 2015. Based on the field data, distributing range analysis, discriminatory power analysis, and correlation analysis were used stepwise to select core metrics from candidate metrics to establish the VIBI assessment system. The VIBI value of each sampling site was calculated as the average of the scaled values of all core metrics. Thirty-six aquatic plant species, including 14 hygrophytes, 13 emergent species, 6 submergent species, 2 floating-leaved species, and 1 floating species were collected. Species diversity was low in the North Canal, and no aquatic plants were recorded in 28 sampling sites, of which 9 sampling sites were dried up. Five sites were in excellent condition (VIBI > 0.60), 5 were good (0.60 > VIBI > 0.38), 7 were fair (0.38 > VIBI > 0.23), and 4 were poor (VIBI < 0.23). Based on the distribution of VIBI, Shahe River and Wenyu River upstream, and Fenghe River located in suburbs had a higher VIBI. Downstream tributaries, such as Qinghe River, Bahe River, and Liangshui River, had a lower VIBI. Correlation analysis showed that habitat quality, habitat complexity, and vegetation diversity along riparian zones were the important factors affecting VIBI along the North Canal, Beijing. Aquatic plants along the North Canal showed low species diversity owing to human disturbance. VIBI along tributaries with limited disturbance from human activities was higher; however, VIBI along tributaries disturbed by frequent human activities was lower. © 2018 Science Press. All rights reserved.     

Dancing to different tunes: heterospecific deciphering of the honeybee waggle dance

Although the structure of the dance language is very similar among species of honeybees, communication of the distance component of the message varies both intraspecifically and interspecifically. However, it is not known whether different honeybee species would attend interspecific waggle dances and, if so, whether they can decipher such dances. Using mixed-species colonies of Apis cerana and Apis mellifera, we show that, despite internal differences in the structure of the waggle dances of foragers, both species attend, and act on the information encoded in each other’s waggle dances but with limited accuracy. These observations indicate that direction and distance communication pre-date speciation in honeybees.