Connectivity or demography: Defining sources and sinks in coral reef fish metapopulations

The identity of an individual patch as a source or a sink within a metapopulation is a function of its ability to produce individuals and to disperse them to other patches. In marine systems patch identity is very often defined by dispersal ability alone—upstream patches are sources—while issues of variable habitat quality (which affects local production) are ignored. This can have important ramifications for the science of marine reserve siting. This study develops a spatially explicit source–sink metapopulation model for reef fish and uses it to evaluate the relative importance of connectivity versus demography and how this depends upon the level of local larval retention and the strength of density-dependent recruitment. Elasticity analyses indicated that patch contribution (source or sink) was more sensitive to demographic parameters (particularly survival) than connectivity and this effect was conserved even under strong levels of density-dependence and was generally strengthened as local retention increased. Variability in the relationship between parameter elasticity and local retention was shown to be dependent upon the magnitude of connectivity for an individual patch relative to a critical connectivity value. The proportion of larvae lost due to transport processes was an important parameter which directly affected the magnitude of this critical connectivity value. Patches with connectivity values less than the critical value contributed to the metapopulation largely via production (i.e., local demographics most important). As local retention increased, so did the importance of demographic parameters in these patches. Patches with connectivity values greater than the critical value contributed largely via dispersal of larvae and thus the importance of local demographics decreased as local retention increased.     

Gastroenteric Viruses Detection in a Drinking Water Distribution-to-Consumption System in a Low-Income Community in Rio de Janeiro

Food and Environmental Virology - The availability of drinking water is one of the main determinants of quality of life, disease prevention and the promotion of health. Viruses are important agents...     

Depositional history of sedimentary linear alkylbenzenes (LABs) in a large South American industrial coastal area (Santos Estuary, Southeastern Brazil)

This paper reports the reconstruction of the contamination history of a large South American industrial coastal area (Santos Estuary, Brazil) using linear alkylbenzenes (LABs). Three sediment cores were dated by ¹³⁷Cs. Concentrations in surficial layers were comparable to the midrange concentrations reported for coastal sediments worldwide. LAB concentrations increased towards the surface, indicating increased waste discharges into the estuary in recent decades. The highest concentration values occurred in the early 1970s, a time of intense industrial activity and marked population growth. The decreased LAB concentration, in the late 1970s was assumed to be the result of the world oil crisis. Treatment of industrial effluents, which began in 1984, was represented by decreased LAB levels. Microbial degradation of LABs may be more intense in the industrial area sediments. The results show that industrial and domestic waste discharges are a historical problem in the area.     

Mapping and evaluating sugarcane expansion in Brazil’s savanna using MODIS and intensity analysis: a case-study from the state of Tocantins

In Brazil, the main biofuel crop is sugarcane, and with its rapid expansion, there is much debate about what land uses and land covers it is replacing, and what are the associated environmental and social impacts. Some argue sugarcane is mainly replacing cattle pasture, thus having minimal impacts on native vegetation and small-scale family farming. In contrast, others claim sugarcane is replacing cropland traditionally under soybeans, rice, beans, and corn. Thus, food security is negatively affected and small-scale family farming livelihoods and culture are threatened. This is a proof-of-concept paper illustrating methods contributing toward the resolution of such debates. First we map land use and cover change in areas undergoing sugarcane expansion using satellite data from MODIS (Moderate Resolution Imaging Spectroradiometer); second, we test the hypothesis that sugarcane is replacing traditional annual crops using intensity analysis, via a case study of land change in the municipality of Pedro Afonso, Tocantins in northern Brazil between the 2008–2013 crop years. Maps matched reference data with overall agreements between 87–91%. Intensity analysis confirmed sugarcane is replacing annual crops much more than cattle pasture and other land uses and covers, pointing to particular economic and social processes driving land change.     

Ecological success of the cladoceran <Emphasis Type="Italic">Penilia avirostris</Emphasis> in the marine environment: feeding performance,gross growth efficiencies and life history

Marine cladocerans are important contributors to the zooplankton community of tropical and temperate coastal ecosystems during the warmer months, when they show explosive population growth. Despite this fact, little information is available on their ecology compared with the extensive studies on their freshwater relatives. The main objective of this study was to determine the in situ feeding and growth rates, and life history parameters of Penilia avirostris in São Sebastião Bay (Brazil) during austral summer 2004, as a premise to understand the advantages of this cladoceran in oligotrophic waters. Culture development experiments, monitored for a period of 12 days, showed that maximum juvenile release occurred after 2 days, and that the development duration of a complete cohort was around 9 days. From bottle incubation grazing experiments, significant ingestion rates upon flagellates, ciliates, dinoflagellates and diatoms were detected. Flagellates were the most important contributors to P. avirostris diet (ca. 80%). P. avirostris ingested between 28 and 97% of its own carbon biomass per day (daily ration) and individual growth rates of this marine cladoceran (0.10–0.24 d^?1) increased with prey availability. The combination of ingestion rates of natural prey and growth rates provided gross growth efficiencies (GGE) of 15–53%, on a carbon basis. Our results suggest that P. avirostris has similar GGE to copepods, although at low food conditions the values for the marine cladocerans seems slightly higher. However, this characteristic alone does not explain the explosive growth and community dominance shown by P. avirostris. Therefore, other traits related to the reproductive biology of the species, such as short generation time, parthenogenetic reproduction, and continuous somatic growth, seems to be mostly responsible for the success of P. avirostris in many marine ecosystems during their seasonal occurrence.     

Spatial modeling of factor analysis scores

The use of mosses as biomonitors operates as an indicator of their concentration in the environment, becoming a methodology which provides a significant interpretation in terms of environmental quality. The different types of pollution are variables that can not be measured directly in the environment - latent variables. Therefore, we propose the use of factor analysis to estimate these variables in order to use them for spatial modelling. On the contrary, the main aim of the commonly used principal components analysis method is to explain the variability of observed variables and it does not permit to explicitly identify the different types of environmental contamination. We propose to model the concentration of each heavy metal as a linear combination of its main sources of pollution, similar to the case of multiple regression where these latent variables are identified as covariates, though these not being observed. Moreover, through the use of geostatistical methodologies, we suggest to obtain maps of predicted values for the different sources of pollution. With this, we summarize the information acquired from the concentration measurements of the various heavy metals, and make possible to easily determine the locations that suffer from a particular source of pollution.     

Distribution of trace metals in moss biomonitors and assessment of contamination sources in Portugal

A biomonitoring survey using the moss species [Hypnum cupressiforme Hedw. and Scelopodium touretii (Brid.) L. Kock] was performed in the whole territory of Portugal, in order to evaluate the atmospheric deposition of the following elements: Cd. Cr, Cu, Fe, Mn, Ni, Pb and Zn. The concentrations of the same elements were also obtained in two types of soil samples, collected under the moss and in nearby plots without any plant coverage, and relationships between moss and soil concentrations was investigated using the multivariate statistical method of Co-inertia Analysis. Also, relationships between concentrations in moss and several anthropogenic, geologic, pedologic and environmental parameters were screened using the same method of Co-inertia Analysis. Higher concentrations of Cu, Pb and Zn were found in areas of higher population density, with higher gasoline consumption, while higher values of Fe and Cr occur in the driest region, with lower plant coverage, indicating strong contamination by resuspended soil particles. Results also show good agreement between moss and soil contents, even for elements with high contribution of anthropogenic sources. The spatial pattern in Portugal of element contents in mosses were also detected and discussed in relation to local contamination sources.     

Intensity of land use changes in a sugarcane expansion region,Brazil

In the last decades, Brazil has been consolidated as one of the world’s largest producers of food, with emphasis on soybeans, sugarcane and beef production. With the opening of new markets and the increase in demand, a competitive scenario was developed among farming activities, resulting in changes in land use and cover. Thus, this study aimed to verify the spatial and temporal land use changes, through intensity analysis, in the microregion of Presidente Prudente, São Paulo state, in two time intervals, 2004–2007 and 2007–2015, in addition to determining the relevance of pasture in this context. The identification of land uses occurred through the analysis of the spectrum-temporal pattern of the Normalized Difference Vegetation Index (NDVI) from Moderate-Resolution Imaging Spectroradiometer (MODIS), in such a way that six classes were identified, annual crop, water, sugarcane, forest, pasture and urban area. The categories annual crop and sugarcane had more intense variations of losses and gains in the studied time intervals. The category pasture was the primary supplying source of the area, showing a reduction of approximately 180,000 hectares in the analyzed period, losing area with greater intensity for the categories of annual crop and sugarcane.