Novel operations research methods for efficiently determining irreplaceable sites for conservation

We examine the irreplaceability of sites in the context of the species set covering problem and the maximal covering species problem. We show that a succession of 0-1 programming problems can be solved to quickly determine the set of irreplaceable sites. For the widely available Oregon data set, we find a general lack of trend in the number of irreplaceable sites with the number of sites available for selection used. Moreover, we observe that irreplaceability at one level of resource may not be a predictor of irreplaceability at a higher or a lower level of resource. Finally, we investigate the economic value of irreplaceable sites by trial removals of those sites. This paper is dedicated to the memory of Dr. Charles S. ReVelle.     

Experts under the microscope: the Wivenhoe Dam case

Prosecution of experts in the wake of disasters has emerged as common in the context of increasing social intolerance of risk. This paper examines expert blame using as a case study the decisions of engineers who operated Wivenhoe Dam during the Queensland floods in January 2011 and the criticisms of those decisions by the subsequent Commission of Inquiry. Our analysis draws on the literature on organisational safety, organisational learning and expertise to examine the relevance of the criteria against which the engineers were judged, the relevant competence of those who made this assessment and the broader implications of such exercises. Our analysis shows that lay judgements of expert practice can be misleading, as evidenced by the Commission of Inquiry’s misguided focus on procedural adherence. We argue that such inquiries—where the focus is on assigning blame—detract from opportunities to learn from incidents and can negatively impact on professional practices. If the aim is to make future disasters less likely, then inquiries that take this approach may be failing in this endeavour, or at least not maximising their contribution.     

Bioacoustic distances between the begging calls of brood parasites and their host species: a comparison of metrics and techniques

A variety of bioacoustics distance metrics have been used to assess similarities in the vocalizations of different individuals. Here, we provide a detailed analysis of several acoustic similarity indices, some of which have been developed with the specific aim of characterizing the sensory coding of auditory stimuli. We compare different approaches through the analysis of begging calls of several passerine species and specialist brood parasitic cuckoos that putatively evolved to mimic their hosts. The different bioacoustics distances did not provide consistently correlated similarity patterns, implying that they are sensitive to different sound features. However, the encoded spectrogram alignment method was correlated with all other acoustic distance metrics, suggesting that this method provides a consistent approach to use when the perceptually salient sound parameters are unknown for a particular species. Our analyses confirm that statistical similarity of begging calls can be detected in a New Zealand pair of host and specialist parasite species. We also show detectable similarity in two other Australasian host–parasite pairs and another New Zealand system, but to a more limited extent. By examining phylogenetic patterns in the begging call diversity, we also confirm that specialist cuckoos have evolved to mimic the begging calls of their hosts but host species have not co-evolved to modify their calls in response to begging call similarity by the parasite. Our results illustrate that understanding the function and mechanism of behavioral copying and mimicry requires statistically consistent measures of similarity that are related to both the physical aspects of the particular display and the sensory basis of its perception.     

Predator detection and dilution as benefits of associations between yellow mongooses and Cape ground squirrels

Associations among organisms are thought to form because the benefits, such as increased foraging efficiency or decreased risk of predation, outweigh any costs, such as resource competition. Though many interspecific associations have been described for closely related mammals, few studies have examined the associations between mammals in different orders. The yellow mongoose (Cynictus pencillata), a carnivore, and the Cape ground squirrel (Xerus inauris), a rodent, co-occur in arid and semi-arid South Africa where they share sleeping burrows, predators, a similar body size, and the capability to emit alarm calls in response to predators. To investigate enhanced predator avoidance as a potential benefit explaining the persistence of this association, we assessed individual mongoose vigilance alone and with squirrels or other mongooses, and with varying interspecific group size, using field observations. We also tested for responses to conspecific and heterospecific alarm calls in both study species using playback experiments. The proportion of time mongoose individuals spent vigilant decreased in the presence of squirrels or other mongooses and was negatively correlated with interspecific group size; a similar pattern was previously shown for conspecific groups of Cape ground squirrels. These results are predicted by both the dilution and collective detection hypotheses. In addition, hetero- and conspecific alarm calls elicited vigilance responses in both species. These results suggest that both species can benefit from the collective detection and dilution arising from their interspecific association and that this interspecific association could be mutualistic.     

Floodplain restoration enhances denitrification and reach-scale nitrogen removal in an agricultural stream

Streams of the agricultural Midwest, USA, export large quantities of nitrogen, which impairs downstream water quality, most notably in the Gulf of Mexico. The two-stage ditch is a novel restoration practice, in which floodplains are constructed alongside channelized ditches. During high flows, water flows across the floodplains, increasing benthic surface area and stream water residence time, as well as the potential for nitrogen removal via denitrification. To determine two-stage ditch nitrogen removal efficacy, we measured denitrification rates in the channel and on the floodplains of a two-stage ditch in north-central Indiana for one year before and two years after restoration. We found that instream rates were similar before and after the restoration, and they were influenced by surface water NO3- concentration and sediment organic matter content. Denitrification rates were lower on the constructed floodplains and were predicted by soil exchangeable NO3- concentration. Using storm flow simulations, we found that two-stage ditch restoration contributed significantly to NO3- removal during storm events, but because of the high NO3- loads at our study site, < 10% of the NO3- load was removed under all storm flow scenarios. The highest percentage of NO3- removal occurred at the lowest loads; therefore, the two-stage ditch's effectiveness at reducing downstream N loading will be maximized when the practice is coupled with efforts to reduce N inputs from adjacent fields.     

Variable effects of a generalist parasitoid on a biocontrol seed predator and its target weed

Biological control (the importation of enemies from an invader's native range) is often considered our best chance of controlling the most widespread invaders. Ideally, the agent reduces invader abundance to some acceptably low level, and the two coexist at low density with the agent providing continuous control over the long-term. But the outcome may be complicated when the agent is attacked by native predators and parasites. We used a spatially explicit, discrete-time, individual-based, coupled plant-seed predator-parasitoid model to estimate the impact of the biocontrol agent Eustenopus villosus (a seed predator) on the invasive, annual weed Centaurea solstitialis, both with and without the generalist parasitoid Pyemotes tritici. We estimated the agent's ability to reduce plant density, spread rate, and population growth rate over 50 years. We used long-term demographic data from two sites in central California, USA, to parameterize the model and assess how populations in different climatic zones might respond differently to the agent and the parasitoid. We found that the biocontrol agent reduced plant density (relative to predictions for an uncontrolled invasion), but its impact on the invader's spread rate was modest and inconsistent. The agent had no long-term impact on population growth rate (lambda). Parasitism caused a trophic cascade, the strength of which varied between sites. At our coastal site, the parasitoid entirely eliminated the impact of the agent on the plant. At our Central Valley site, even when parasitized, the agent significantly reduced plant density and spread rate over several decades (although to a lesser degree than when it was not parasitized), but not invader lambda. Surprisingly, we also found that the length of time the invader was allowed to spread across the landscape prior to introducing the agent (5, 25, or 50 years) had little influence over its ability to control the weed in the long-term. This is encouraging news for land managers attempting to control invasive plants that have already established widespread, high-density populations. Unfortunately, our results also show that attack by the native generalist parasitoid had a larger influence over how effectively the agent reduced invader performance.     

Risk-based optimization of the design of on-shore pipeline shutdown systems

Crude oil and other liquid materials are transported in large quantities through pipelines. Pipelines are an efficient and safe transport way as compared to both rail and road transportation, both from the economical and environmental points of view. Nevertheless, loss of containment accidents can occur due to external action –a mechanical impact, for example– or to corrosion, aging, etc. Even though the frequency of such events is certainly very low, the effects and consequences on environment can be very important.The consequences of accidents in pipelines can be efficiently reduced through a suitable design of the whole system. One of the points which must be decided in the design is the installation of blocking valves at appropriate distances, so that emergency shutdowns can interrupt the flow of substance and isolate the section where the loss of containment has taken place. In the case of pipe rupture the amount released is therefore limited to the content between two consecutive valves, usually placed according to heuristic criteria. However, if too many valves are used, the capital cost of equipment increases excessively, and if too few are used, the risk of serious accidents increases.In this paper we consider the possibility of improving the design of such systems by applying risk-based optimization criteria. We propose an optimization methodology to solve this conflict by means of an objective function that analyzes the variations in overall costs, including the cost of the investment (with specific reference to blocking valves) and the cost of accidents. The result is an optimum situation in which costs are kept to a minimum. As an example, we apply the methodology to the transportation of gasoline by pipeline.     

Effects of habitat fragmentation on the genetic structure and connectivity of the black-lipped pearl oyster Pinctada margaritifera populations in French Polynesia

Habitat destruction leading to increased fragmentation is detrimental to species by reducing population size and genetic diversity and by restraining population connectivity. However, little is known about the effects of naturally fragmented habitats on wild populations, especially when it comes to marine benthic invertebrates with long pelagic larval duration. In this framework, we investigated the connectivity and genetic diversity variation among nine wild populations of the black-lipped pearl oyster, Pinctada margaritifera, throughout French Polynesia using ten microsatellite DNA markers. Despite the naturally fragmented habitat (South Pacific oceanic islands), we found high values of genetic diversity and population admixture, indicating connectivity at small and large spatial scales within sampled sites of the Tuamotu, and between the Society and Tuamotu Archipelagos. In the meantime, habitat geomorphology increased genetic drift in populations occurring in small, closed lagoons. Significant genetic structure not correlated to geographic distance was detected mainly between closed and open lagoons. The Marquesas Islands hosted the most divergent populations, likely a result of vicariance. Our results also highlight that migration patterns among lagoons are not symmetrical. Altogether, the general pattern of gene flow, nonsymmetrical migration rates among populations, absence of isolation by distance and absence of recent extinction events found in our study strongly suggest that P. margaritifera populations of French Polynesia follow an asymmetrical island model of dispersal.