Modelling Replicated Weed Growth Data using Spatially-varying Growth Curves

Weed growth in agricultural fields constitutes a major deterrent to the growth of crops, often resulting in low productivity and huge losses for the farmers. Therefore, proper understanding of patterns in weed growth is vital to agricultural research. Recent advances in Geographical Information Systems (GIS) now allow geocoding of agricultural data, which enable more sophisticated spatial analysis. Our current application concerns the development of statistical models for conducting spatial analysis of growth patterns in weeds. Our data comes from an experiment conducted in Waseca, Minnesota, that recorded growth of the weed Setariaspp. We capture the spatial variation in Setaria spp. growth using spatially-varying growth curves. An added challenge is that these designs are spatially replicated, with each plot being a lattice of sub-plots. Therefore, spatial variation may exist at different resolutions – a macro level variation between the plots and micro level variation between the sub-plots nested within each plot. We develop a Bayesian hierarchical framework for this setting. Flexible classes of models result which are fitted using simulation-based methods.     

Temperature and salinity adaptation in the purple shore crab Hemigrapsus nudus: An in vitro physiological study with excised gills

The alkali-soluble polysaccharides of the cell wall from 7 different marine diatoms were shown to contain the monosaccharides rhamnose, fucose, galactose, mannose and xylose. The relative amounts of rhamnose and fucose varied widely from one species to another, from the very rhamnose-rich Chaetoceros affinis to Thalassiosira gravida, where no rhamnose was found. All Chaetoceros species were found to have a high content of rhamnose. Also the proportion of mannose to galactose varied widely from species to species. The observed change in monomer composition from the logarithmic to the stationary growth phase is explained by assuming the alkali-soluble fraction to be a mixture of polysaccharides. The soluble, extracellular polysaccharides from 4 of the diatoms were also investigated. The products from C. affinis and C. curvisetus were homogeneous and composed of only 3 monomers: rhamnose, fucose and galactose. The extracellular polysaccharide composition in all species investigated was quite different from the composition of the cellular alkali-soluble fraction. The ecological aspects of these soluble polysaccharides may prove of considerable interest.     

Skeletal Sr content and density in Porites spp. in relation to environmental factors

The coral genus Porites was investigated to evaluate the use of skeletal strontium content as a recorder of seasonal and annual temperature oscillations. In the Hawaiian archipelago, the mean annual water temperature fluctuates by ±0.5C°, with seasonal temperature ranges of 4 to 8C°; the resolution of the Sr thermometer appears to be ±1.5C°. Of this error term, ±0.7C° is analytical, the remainder is biological. Corals from some locations yield temperatures which are consistently offset from the Sr vs temperature calibration line, suggesting genetic population differences. Analysis of cores collected in 1980 from Hawaiian Porites spp. showed no discernible long-term trends over a 100 yr period. Although absolute temperatures are poorly resolved, subannual oscillations in skeletal Sr values accurately reflect recorded seasonal temperature variations. The most useful application of the Sr thermometer is in deciphering the skeletal density band pattern. Subannual oscillations in Sr-temperature values when correlated with density values showed a consistent pattern. When the sections chosen for x-radiography closely followed the growth axis, an abrupt shift from minimum to maximum skeletal density was evident in September/October each year, followed by a gradual decrease in density. The density pattern, shown by microdensitometry, is independent of latitude or temperature range over the Hawaiian archipelago. The annual density shift coincides with high but declining water temperature and solar insolation. If low-density growth represents optimum calcification conditions, the density shift in Hawaiian Porites spp. reflects a change in conditions from optimal to suboptimal. Analyses of samples from other Indo-Pacific locations confirm the generality of this density pattern and suggest a complex relationship between density and environmental light and temperature.Hawaii Institute of Geophysics Contribution No. 1209; Hawaii Institute of Marine Biology Contribution No. 618     

Geese and dietary allelochemicals — food palatability and geophagy

Summary The palatability of plants was studied in young, immature and adult geese of three species,Anser anser, Anser indicus andBranta canadensis, with respect to secondary plant metabolites. In their first 1–4 weeks of life, hand-reared goslings feed on a wide variety of plants, more or less irrespective of their allelochemical contents. Older birds become more selective, but still consume plants which are normally considered to be unpalatable or even toxic for other animals. Choice experiments were performed with pure secondary metabolites which were offered on otherwise highly palatable food items, such as leaves ofTaraxacum officinale. These experiments revealed a similar trend, in that very young goslings discriminate their food much less than older goslings or adult geese. In general, food contaminated with essential oils was rejected, whereas alkaloids, glycosides, amines and sulfur compounds were tolerated to a remarkable degree. In consequence, especially young, but also adult geese must have a high capacity to tolerate and/or to detoxify dietary allelochemicals. Another detoxification mechanism became evident during the experiments: geese ingest soil and mud quite regularly. It could be shown experimentally that the respective soil had a high capacity to bind alkaloids. We assume that geophagy is a means (besides a presumed active detoxification in the liver) to adsorb and thus reduce the contents of dietary allelochemicals.     

Prenatal diagnosis of turner syndrome using cells cultured from cystic hygromas in two pregnancies with normal maternal serum alpha-fetoprotein

In two cases of prenatally detected cystic hygroma with oligohydraminos, successful cytogenetic diagnosis of Turner syndrome was achieved using cells obtained from direct aspiration of the cystic hygroma. Exceptionally high levels of alpha-fetoprotein were found in the cystic hygroma fluid, as might be expected. However, the maternal serum alpha-fetoprotein levels were within normal limits. Elevated alpha-fetoprotein levels in ‘amniotic fluid’ noted previously in the literature may have resulted because of inadvertent tapping of the cystic hygroma. It is clear from our cases that maternal serum levels of alpha-fetoprotein will not necessarily be elevated and will not serve as a screening mechanism for cystic hygromas.