Persistence models for mark-recapture

The stable of models available for analyzing mark-recapture data (Otis et al. Wild Momogr 66:135, 1978) includes those having behavioral characteristics, time variation, heterogeneity, along with combinations of those characteristics. This paper proposes use of a series of models based on the persistence model of Ramsey and Usner (Biometrics 59:331–339, 2003). We show that persistence can be modeled in combination with behavior and with time variation. We apply the persistence model to situations in which capture occasions are not equally-spaced in time. Two case studies illustrate the use of these extended persistence models.     

Digit ratio (2D:4D) and dominance rank in female rhesus macaques (Macaca mulatta)

Female rhesus macaques exhibit matrilineal dominance structures, and high dominance rank confers fitness benefits across a lifetime and across generations. Rank effects are “inherited” through social processes that are well understood; however, biological mechanisms that might impact these processes are not well known. Recently, it has been shown that prenatal androgens appear to be implicated in supporting dominance rank hierarchies in some mammals. In humans, interindividual differences in the second (index) to fourth (ring) digit ratio (2D:4D) have been linked indirectly to variation in prenatal androgens, with low 2D:4D in both sexes associated with higher inferred prenatal androgen effects. 2D:4D has also been related to dominant social behavior and has been shown to co-vary with social systems across nonhuman primate species. Here, we investigate how 2D:4D co-varies with socially inherited dominance rank in female rhesus macaques. Low 2D:4D was associated with higher-ranking females, while higher 2D:4D was associated with lower-ranking females. Similar relationships were also shown between ranked families within matrilines. This is the first study to show such a relationship between 2D:4D and dominance rank in a nonhuman primate and suggests that prenatal androgen effects could be involved in the maintenance of dominance rank in female cercopithecine primates.     

Estimation of age at maturation and growth of Atlantic green turtles (Chelonia mydas) using skeletochronology

Despite the vast amount of research on threatened and endangered green turtle populations, some uncertainty regarding stage durations, growth rates, and age at maturation remains. We used skeletochronology to address this gap in knowledge for green turtle populations in the North Atlantic Ocean that use coastal waters along the southeastern U.S. as developmental habitat. Oceanic stage duration was estimated at 1–7 years ( [`(\textX)] \overline{\text{X}}  = 3 years). Several growth models, including von Bertalanffy, logistic, Gompertz, and power functions were evaluated for describing sex-specific length-at-age data. Ages at maturation estimated using mean size at nesting for females from each genetic sub-population contributing juveniles to this neritic foraging area were 44 years (Florida), 42.5 years (Costa Rica), and 42 years (Mexico), which were higher than previously reported ages. This implies that nesting populations comprising primarily individuals utilizing foraging grounds in the southeastern U.S. may take longer to recover than previously estimated.     

Interaction of ocean acidification and temperature; the high cost of survival in the brittlestar Ophiura ophiura

This study has demonstrated an interaction between the effect of increased ocean acidity and temperature (40 days exposure) on a number of key physiological parameters in the ophiuroid brittlestar, Ophiura ophiura. Metabolic upregulation is seen in the low pH treatments when combined with low temperature. However, this is far outweighed by the response to elevated temperature (+4.5°C). In the high temperature/low pH treatments treatments (where calcite is undersaturated) there appears to be an energetic trade-off likely in order to maintain net calcification where dissolution of calcium carbonate may occur. This energy deficit results in a ~30% reduction in the rate of arm regeneration at pH 7.3 which is predicted to be reached by the year 2300. This understanding of how O. ophiura responds to ocean acidification, taking into account an interactive effect of temperature, suggests that fitness and survival may indirectly be reduced through slower recovery from arm damage.     

Female chacma baboons form strong, equitable, and enduring social bonds

Analyses of the pattern of associations, social interactions, coalitions, and aggression among chacma baboons (Papio hamadryas ursinus) in the Okavango Delta of Botswana over a 16-year period indicate that adult females form close, equitable, supportive, and enduring social relationships. They show strong and stable preferences for close kin, particularly their own mothers and daughters. Females also form strong attachments to unrelated females who are close to their own age and who are likely to be paternal half-sisters. Although absolute rates of aggression among kin are as high as rates of aggression among nonkin, females are more tolerant of close relatives than they are of others with whom they have comparable amounts of contact. These findings complement previous work which indicates that the strength of social bonds enhances the fitness of females in this population and support findings about the structure and function of social bonds in other primate groups.     

Hydrodynamic and ecological assessment of nearshore restoration: A modeling study

Along the Pacific Northwest coast, much of the estuarine habitat has been lost over the last century to agricultural land use, residential and commercial development, and transportation corridors. As a result, many of the ecological processes and functions have been disrupted. To protect and improve these coastal habitats that are vital to aquatic species, many projects are currently underway to restore estuarine and coastal ecosystems through dike breaches, setbacks, and removals. Understanding site-specific information on physical processes is critical for improving the success of such restoration actions. In this study, a three-dimensional hydrodynamic model was developed to simulate estuarine processes in the Stillaguamish River estuary, where restoration of a 160-acre parcel through dike setback has been proposed. The model was calibrated to observed tide, current, and salinity data for existing conditions and applied to simulate the hydrodynamic responses to two restoration alternatives. Model results were then combined with biophysical data to predict habitat responses within the restoration footprint. Results showed that the proposed dike removal would result in desired tidal flushing and conditions that would support four habitat types on the restoration footprint. At the estuary scale, restoration would substantially increase the proportion of area flushed with freshwater (<5 ppt) at flood tide. Potential implications of predicted changes in salinity and flow dynamics are discussed relative to the distribution of tidal marsh habitat.     

Fish population dynamics in a seasonally varying wetland

Small fishes in seasonally flooded environments such as the Everglades are capable of spreading into newly flooded areas and building up substantial biomass. Passive drift cannot account for the rapidity of observed population expansions. To test the ‘reaction-diffusion’ mechanism for spread of the fish, we estimated their diffusion coefficient and applied a reaction-diffusion model. This mechanism was also too weak to account for the spatial dynamics. Two other hypotheses were tested through modeling. The first—the ‘refuge mechanism’—hypothesizes that small remnant populations of small fishes survive the dry season in small permanent bodies of water (refugia), sites where the water level is otherwise below the surface. The second mechanism, which we call the ‘dynamic ideal free distribution mechanism’ is that consumption by the fish creates a prey density gradient and that fish taxis along this gradient can lead to rapid population expansion in space. We examined the two alternatives and concluded that although refugia may play an important role in recolonization by the fish population during reflooding, only the second, taxis in the direction of the flooding front, seems capable of matching empirical observations. This study has important implications for management of wetlands, as fish biomass is an essential support of higher trophic levels.     

Effect of the nitrification inhibitor dicyandiamide on microbial communities and N<Subscript>2</Subscript>O from an arable soil fertilized with ammonium sulphate

Nitrous oxide (N₂O) affects climate change as a greenhouse gas and indirectly contributes to stratospheric ozone depletion. The main source of N₂O in soils is denitrification which requires high soil moisture, carbon and nitrate. Nitrification inhibitors can be used to mitigate emissions of N₂O from soils. In Portugal, fertilisers are often applied when soils are still relatively warm and moist conditions conducive to denitrification. A Portuguese arable soil was inhibited with dicyandiamide, a nitrification inhibitor and the effect on soil microbiological activity and composition was determined after 46 days. Soils were then incubated and received carbon and ammonium under high soil water conditions and mineral N and N₂O fluxes were measured during 22 days. We found that dicyandiamide decreased microbial populations and activity, but did not alter composition. Pre-conditioning of the soil with dicyandiamide was 80% more effective in reducing fluxes of N₂O than simultaneous application with fertiliser.     

Evaluation of metabisulfite and a commercial steel wool for removing chromium(VI) from wastewater

Efficiency of metabisulfite and a commercial steel wool as reducing agents in the removal of Cr(VI) from wastewaters was evaluated. Chromium(VI) was converted to Cr(III), precipitated with NaOH, and removed by filtration. A reduction of more than 1.0 × 10⁵ and 4.0 × 10⁵ fold in total Cr and the Cr(VI) concentrations, respectively, was observed by employing steel wool masses as low as 0.4420 g to 30-mL solutions of wastewater. Chromium(III) hydroxide obtained after the treatment was recycled and used as marker in cattle nutrition studies. The liquid residue obtained after the treatment was reused as precipitation agent replacing NaOH.     

Allometric scaling predicts preferences for burned patches in a guild of East African grazers

The high herbivore diversity in savanna systems has been attributed to the inherent spatial and temporal heterogeneity related to the quantity and quality of food resources. Allometric scaling predicts that smaller-bodied grazers rely on higher quality forage than larger-bodied grazers. We replicated burns at varying scales in an East African savanna and measured visitation by an entire guild of larger grazers ranging in size from hare to elephant. We found a strong negative relationship between burn preference and body mass with foregut fermenters preferring burns to a greater degree than hindgut fermenters. Burns with higher quality forage were preferred more than burns with lower quality forage by small-bodied grazers, while the opposite was true for large-bodied grazers. Our results represent some of the first experimental evidence demonstrating the importance of body size in predicting how large herbivores respond to fire-induced changes in plant quality and quantity.