Lethal Effects of Water Quality on Threatened California Salamanders but Not on Co‐Occurring Hybrid Salamanders

Biological invasions and habitat alteration are often detrimental to native species, but their interactions are difficult to predict. Interbreeding between native and introduced species generates novel genotypes and phenotypes, and human land use alters habitat structure and chemistry. Both invasions and habitat alteration create new biological challenges and opportunities. In the intensively farmed Salinas Valley, California (U.S.A.), threatened California tiger salamanders (Ambystoma californiense) have been replaced by hybrids between California tiger salamander and introduced barred tiger salamanders (Ambystoma tigrinum mavortium). We conducted an enclosure experiment to examine the effects habitat modification and relative frequency of hybrid and native California tiger salamanders have on recruitment of salamanders and their prey, Pacific chorus frogs (Pseudacris regilla). We tested whether recruitment differed among genetic classes of tiger salamanders (hybrid or native) and pond hydroperiod (seasonal or perennial). Roughly 6 weeks into the experiment, 70% (of 378 total) of salamander larvae died in 4 out of 6 ponds. Native salamanders survived (n = 12) in these ponds only if they had metamorphosed prior to the die‐offs. During die‐offs, all larvae of native salamanders died, whereas 56% of hybrid larvae died. We necropsied native and hybrid salamanders, tested water quality, and queried the California Department of Pesticide Regulation database to investigate possible causes of the die‐offs. Salamander die‐offs, changes in the abundance of other community members (invertebrates, algae, and cyanobacteria), shifts in salamander sex ratio, and patterns of pesticide application in adjacent fields suggest that pesticide use may have contributed to die‐offs. That all survivors were hybrids suggests that environmental stress may promote rapid displacement of native genotypes. Efectos Letales de la Calidad del Agua sobre Salamandras de California Amenazadas pero no sobre Salamandras Híbridas Concurrentes     

锰生物氧化的研究进展及在水处理中的应用

自然界中锰氧化物的形成主要是通过微生物作用,而锰的微生物氧化机制较为复杂,除了多铜氧化酶、过氧化物酶外,最近发现微生物生成的超氧化物可能也参与了锰的氧化.微生物生成的生物锰氧化物具有较高的吸附氧化活性,其微观结构和活性会随时间快速变化.比如,锰的生物氧化初级产物具有强的诱导Mn(Ⅱ)氧化的活性,而次级产物则几乎没有.锰的生物氧化过程复杂而又广泛进行着,尤其在含锰水体的处理单元中发挥着重要的净水作用,为了深刻理解生物锰氧化物,对锰氧化细菌和真菌、锰生物氧化机理、生物锰氧化物的吸附氧化特征及潜在的工程应用等当前研究热点问题进行了综述.     

Regional extinction of a conspicuous dorid nudibranch (Mollusca: Gastropoda) in California

Felimare californiensis (=Hypselodoris californiensis) was once common throughout the Southern California Bight (SCB) and California Channel Islands. This well-known shallow-water nudibranch, which specializes on dysideid sponges, has persisted for decades in Mexico, but in California disappeared from its entire range by 1984. Since reappearing in 2003, it has been found only at Santa Catalina Island, plus sightings of single individuals in 2011 at Santa Cruz Island and San Diego. The decline of F. californiensis in California was documented using published historical records, museum collections, unpublished field accounts, and images posted online. The loss of this emblematic species is unique among Californian nudibranchs, including (1) its congener Felimare porterae (=Mexichromis porterae), with which it appears to overlap in diet, and (2) opisthobranch species with similar historical geographic ranges and mode of development. The decline in F. californiensis is not predicted by warming trends and climate variation over the past 40 years, including the strong El Niño events of 1983 and 1998. Coastal pollution from the large human population in southern California may have impacted Dysidea amblia, the primary reported prey of F. californiensis. Historical overcollecting of the nudibranch and habitat loss through the development of major ports likely also contributed to its decline. Sightings since 2003 are consistent with a nascent recovery, as elements of water quality have improved in the SCB in recent decades.     

Biological impacts of ocean acidification: a postgraduate perspective on research priorities

Research into the effects of ocean acidification (OA) on marine organisms has greatly increased during the past decade, as realization of the potential dramatic impacts has grown. Studies have revealed the multifarious responses of organisms to OA conditions, indicating a high level of intra- and interspecific variation in species’ ability to accommodate these alterations. If we are to provide policy makers with sound, scientific input regarding the expected consequences of OA, we need a broader understanding of these predicted changes. As a group of 20 multi-disciplinary postgraduate students from around the globe, with a study focus on OA, we are a strong representation of ‘next generation’ scientists in this field. In this unique cumulative paper, we review knowledge gaps in terms of assessing the biological impacts of OA, outlining directions for future research.     

The physiological and molecular responses of larvae from the reef-building coral Pocillopora damicornis exposed to near-future increases in temperature and pCO2

Given the threats of greenhouse gas emissions and a changing climate to marine ecosystems, there is an urgent need to better understand the response of not only adult corals, which are particularly sensitive to environmental changes, but also their larvae, whose mechanisms of acclimation to both temperature increases and ocean acidification are not well understood. Brooded larvae from the reef coral Pocillopora damicornis collected from Nanwan Bay, Southern Taiwan, were exposed to ambient or elevated temperature (25 or 29 °C) and pCO₂ (415 or 635 μatm) in a factorial experiment for 9 days, and a variety of physiological and molecular parameters were measured. Respiration and rubisco protein expression decreased in larvae exposed to elevated temperature, while those incubated at high pCO₂ were larger in size. Collectively, these findings highlight the complex metabolic and molecular responses of this life history stage and the need to integrate our understanding across multiple levels of biological organization. Our results also suggest that for this pocilloporid larval life stage, the impacts of elevated temperature are likely a greater threat under near-future predictions for climate change than ocean acidification.     

Spatial variogram estimation from temporally aggregated seabird count data

Seabird abundance is an important indicator for assessing impact of human activities on the marine environment. However, data collection at sea is time consuming and surveys are carried out over several consecutive days for efficiency reasons. This study investigates the validity of aggregating those data over time to estimate a spatial variogram that is representative for spatial correlation in species abundance. For this purpose we simulate four-day surveys of seabird count data that contain spatial and temporal correlation arising from temporal changes in the spatial pattern of environmental conditions. Estimates of the aggregated spatial variogram are compared to a variogram that would arise when data were collected over a single day. The study reveals that, under changing environmental conditions over surveys days, aggregating data over a four-day survey increases both the non-spatial variation in the data and the scale of spatial correlation in seabird data. Next, the effect of using an aggregated variogram on the statistical power to test the significance of an impact is investigated. The impact concerns a case of establishing an offshore wind farm resulting in seabird displacement. The study shows that both overestimation and underestimation of statistical power occurs, with power estimates differing up to a factor of two. We conclude that the spatial variation in seabird abundance can be misrepresented by using temporally aggregated data. In impact studies, such misrepresentation can lead to erroneous assessments of the ability to detect impact.     

Suppressed recovery of plant community composition and biodiversity on dredged fill of a hurricane-induced inlet through a barrier island

In September 2003, Hurricane Isabel created an inlet over 500 m wide and 10 m deep that connected the Atlantic Ocean and Pamlico Sound. This breach was subsequently filled with sediments dredged from the adjacent sound. The purpose of this study was to determine if the barrier island terrestrial plant communities were naturally re-establishing through primary succession. In 2006–2008, we compared plant communities, soil carbon and nitrogen, and Aeolian transport of sediments in undisturbed back-dunes, undisturbed shrub thickets, putative back-dunes, and putative shrub thickets. We found that species richness and evenness were low on the filled area relative to adjacent plant communities that had persisted through the storm. Plants on the filled area were almost entirely limited to a band of primarily Spartina patens found at the margin of the sound and there were no signs of establishing the typical zonation of back dune grasses, shrubs, and salt marsh. Evaluation of soil quality suggests that nutrients and organic material are not limiting recovery. Aeolian transport, however, was demonstrably higher across the filled area, where no dense stands of taller plants buffered the airflow. Plant re-establishment is suppressed by wind erosion inhibiting deposition of seeds. Recovery of the site will likely depend on the rhizomatous spread of S. patens from the sound shore. S. patens can then potentially facilitate the colonization of other species by buffering the wind and trapping seeds of other plants. Ironically, this slow recovery may benefit federally threatened bird species that require sparse vegetation for nesting success.     

Passive scalar roughness lengths for atmospheric boundary layer flow over complex, fractal topographies

When modeling atmospheric boundary layer flow over rough landscapes, surface fluxes of flow quantities (momentum, temperature, etc.) can be described with equilibrium logarithmic law expressions, all of which require specification of a roughness length that is, physically, the elevation at which the flow quantity equals its surface value. In high Reynolds number flows, such as the atmospheric boundary layer, inertial forces associated with turbulent eddy motions are responsible for surface momentum fluxes (form, or pressure drag). Surface scalar fluxes, on the other hand, occur exclusively via diffusion in the immediate vicinity of the topography—the interfacial region—before being advected by turbulent eddy motions into the bulk of the flow. Owing to this difference in surface transfer mechanism, the passive scalar roughness length, $z_{0S}$ , is known to be less than the momentum roughness length, $z_0$ . In this work, classical relations are used to specify $z_{0S}$ during large-eddy simulation of atmospheric boundary layer flow over aerodynamically rough, synthetic, fractal topographies which exhibit power-law height energy spectrum, $E_h (k) \sim k^{\beta _s}$ , where $\beta _s$ is a (predefined) spectral exponent. These topographies are convenient since they resemble natural landscapes and $\beta _s$ can be varied to change the topography’s aerodynamic roughness (the study considers a suite of topographies with $-2.4 \le \beta _s \le -1.2$ , where $-2.4$ and $-1.2$ are the “most smooth” and “most rough” cases, respectively, corresponding with roughness Reynolds number, $Re_0 \approx 10$ and $300$ ). It is often assumed that $z_{0S}/z_{0} \approx 10^{-1}$ for all $Re_0$ . But results from this work show that the roughness length ratio, $z_{0S}/z_{0}$ , depends strongly on $Re_0$ , ranging between $10^{-3}$ and $10^{-1}$ .     

Comparison of methods for determining key marine areas from tracking data

There is an urgent need to identify key marine areas for conservation, particularly in the high seas. A range of techniques have been applied to tracking data from higher predators, particularly seabirds and pinnipeds, to determine the areas of greatest use. This study compared three commonly used methods—kernel, first-passage time and state-space modelling—and a new approach, minimum displacement rate, for the analysis of data from the wandering albatross Diomedea exulans of Bird Island, South Georgia, tracked during the chick-rearing period. Applied to a single track, these four models identified similar marine areas as important. The greatest similarity in areas identified occurred when model assumptions were shared (such as slow speed indicating spatial preference) even when methods modelled these assumptions differently (e.g. Bayesian inference versus cumulative density surface). A gridded overlap approach applied to all tracks revealed core areas not apparent from results of any single analysis. The gridded approach also revealed spatial overlap between methods based on different assumptions (e.g. minimum displacement rate and kernel analysis) and between individuals. Although areas identified as important by kernel and first-passage time analysis of a single track were biased towards resting locations during darkness, this does not negate the requirement for their protection. Using the gridded overlap approach, two distinct core regions were identified for the wandering albatross; one close to the breeding colony and another 800 km to the North–West in the high seas. This convenient and pragmatic approach could be applied to large data sets and across species for the identification of a network of candidate marine protected areas in coastal and pelagic waters.     

Body condition of predatory fishes linked to the availability of sandeels

Lesser sandeels Ammodytes marinus are eaten by a range of predatory fishes including commercially fished species, but are also exploited at large scale by industrial fisheries. Is availability of sandeels, as key prey source, linked to the body condition of predatory fishes? In the North Sea, the largest sandeel biomass is concentrated in the Dogger Bank region. Here we studied predator–sandeel interactions at two sites differing widely in sandeel abundance and local sandeel fishing effort. Surveys took place in 2004, 2005, and 2006, years when local sandeel densities observed at these sites were low, intermediate, and high, respectively. Five predator species––whiting, lesser weever, grey gurnard, plaice, and haddock––showed better body condition indices in either the years or study area (or both) characterised by higher local sandeel densities, when compared to sandeel-poorer conditions. Moreover, whiting, weever, and gurnard condition was better for those individuals actually observed to have eaten sandeels (based on stomach contents) than for those that had not. As body condition relates to growth, reproduction, and survival, predators in sandeel-rich conditions may be inferred to have a higher fitness. These links between sandeel availability, sandeel consumption, and predator condition hint that, if large-scale localised depletions of sandeels were to occur, negative indirect effects on predatory fish might become apparent, underlining the importance of considering the sandeel fishery in an ecosystem context.