A case of paternal uniparental disomy for chromosome 11

We report a case of paternal uniparental disomy for chromosome 11 that presented as severe intrauterine growth retardation. Autopsy following intrauterine death also revealed aberrant intestinal rotation and hypospadias. Chromosome analysis of direct preparations from placental biopsy showed an abnormal 47,XY,+11 karyotype. Analysis of long-term cultures from the placenta revealed 46,XY/47,XY,+11 mosaicism. Fluorescence in situ hybridization (FISH) studies on interphase nuclei confirmed trisomy 11 in multiple placental sites but detected only disomic cells in fetal skin. Investigation using microsatellite polymorphisms demonstrated paternal isodisomy at loci D11S909, D11S956, and D11S488, and paternal heterodisomy at locus D11S928.     

Evaluation of sample recovery of malodorous livestock gases from air sampling bags, solid-phase microextraction fibers, Tenax TA sorbent tubes, and sampling canisters

Odorous gases associated with livestock operations are complex mixtures of hundreds if not thousands of compounds. Research is needed to know how best to sample and analyze these compounds. The main objective of this research was to compare recoveries of a standard gas mixture of 11 odorous compounds from the Carboxen/PDMS 75-microm solid-phase microextraction fibers, polyvinyl fluoride (PVF; Tedlar), fluorinated ethylene propylene copolymer (FEP; Teflon), foil, and polyethylene terephthalate (PET; Melinex) air sampling bags, sorbent 2,b-diphenylene-oxide polymer resin (Tenax TA) tubes, and standard 6-L Stabilizer sampling canisters after sample storage for 0.5, 24, and 120 (for sorbent tubes only) hrs at room temperature. The standard gas mixture consisted of 7 volatile fatty acids (VFAs) from acetic to hexanoic, and 4 semivolatile organic compounds including p-cresol, indole, 4-ethylphenol, and 2'-aminoacetophenone with concentrations ranging from 5.1 ppb for indole to 1270 ppb for acetic acid. On average, SPME had the highest mean recovery for all 11 gases of 106.2%, and 98.3% for 0.5- and 24-hr sample storage time, respectively. This was followed by the Tenax TA sorbent tubes (94.8% and 88.3%) for 24 and 120 hr, respectively; PET bags (71.7% and 47.2%), FEP bags (75.4% and 39.4%), commercial Tedlar bags (67.6% and 22.7%), in-house-made Tedlar bags (47.3% and 37.4%), foil bags (16.4% and 4.3%), and canisters (4.2% and 0.5%), for 0.5 and 24 hr, respectively. VFAs had higher recoveries than semivolatile organic compounds for all of the bags and canisters. New FEP bags and new foil bags had the lowest and the highest amounts of chemical impurities, respectively. New commercial Tedlar bags had measurable concentrations of N,N-dimethyl acetamide and phenol. Foil bags had measurable concentrations of acetic, propionic, butyric, valeric, and hexanoic acids.     

Establishing principal soil quality parameters influencing earthworms in urban soils using bioassays

Potential contamination at ex-industrial sites means that, prior to change of use, it will be necessary to quantify the extent of risks to potential receptors. To assess ecological hazards, it is often suggested to use biological assessment to augment chemical analyses. Here we investigate the potential of a commonly recommended bioassay, the earthworm reproduction test, to assess the status of urban contaminated soils. Sample points at all study sites had contaminant concentrations above the Dutch soil criteria Target Values. In some cases, the relevant Intervention Values were exceeded. Earthworm survival at most points was high, but reproduction differed significantly in soil from separate patches on the same site. When the interrelationships between soil parameters and reproduction were studied, it was not possible to create a good model of site soil toxicity based on single or even multiple chemical measurements of the soils. We thus conclude that chemical analysis alone is not sufficient to characterize soil quality and confirms the value of biological assays for risk assessment of potentially contaminated soils.     

The role of glomalin, a protein produced by arbuscular mycorrhizal fungi, in sequestering potentially toxic elements

Naturally occurring soil organic compounds stabilize potentially toxic elements (PTEs) such as Cu, Cd, Pb, and Mn. The hypothesis of this work was that an insoluble glycoprotein, glomalin, produced in copious amounts on hyphae of arbuscular mycorrhizal fungi (AMF) sequesters PTEs. Glomalin can be extracted from laboratory cultures of AMF and from soils. Three different experiments were conducted. Experiment 1 showed that glomalin extracted from two polluted soils contained 1.6-4.3 mg Cu, 0.02-0.08 mg Cd, and 0.62-1.12 mg Pb/g glomalin. Experiment 2 showed that glomalin from hyphae of an isolate of Gigaspora rosea sequestered up to 28 mg Cu/g in vitro. Experiment 3 tested in vivo differences in Cu sequestration by Cu-tolerant and non-tolerant isolates of Glomus mosseae colonizing sorghum. Plants were fed with nutrient solution containing 0.5, 10 or 20 microM of Cu. Although no differences between isolates were detected, mean values for the 20 microM Cu level were 1.6, 0.4, and 0.3 mg Cu/g for glomalin extracted from hyphae, from sand after removal of hyphae and from hyphae attached to roots, respectively. Glomalin should be considered for biostabilization leading to remediation of polluted soils.     

The trophic role of glycolic acid in coastal seawater. II. Seasonal changes in concentration and heterotrophic use in Ipswich Bay,Massachusetts, USA

Glycolic acid is a known algal excretory product which is found in marine waters and is readily metabolized by marine bacteria. The following parameters were measured over the course of a year in Ipswich Bay: chlorophyll a, temperature, viable bacteria, heterotrophic uptake of glycolate, and glycolate concentrations. The latter two were combined to give estimates of the flux of glycolate for a station 3 km out in the bay and for an inshore station. Pronounced seasonal changes were found for all parameters. Statistically significant correlations between heterotrophic V _max and glycolic acid concentrations and temperature were found, but not between planktonic chlorophyll a and any of the other parameters. Measurements of glycolic acid flux yielded an annual flux of 2.84 g m^-2 for the bay station, which is about 0.5% of the bay phytoplankton production. Glycolic acid turns over roughly 12 times per year in the bay. It contributes perhaps as much to bacterial metabolism as any other single substrate, but is apparently not of dominating importance.     

Learning during competitive positioning in the nest: do nestlings use ideal free ‘foraging’ tactics?

Begging behaviour of nestling birds may involve more than a simple, honest source of information for parents to use in provisioning. Many aspects of begging behaviour relate instead to sibling competition for food items within the nest, and we might expect evidence of adaptive learning and behavioural adjustment in response to experience of the competitive environment. In this study, we consider begging in different locations within the nest as analogous to foraging in different patches, varying in food availability. Using hand-feeding trials, we created zones of differing profitability within an artificial nest by adjusting either the prey size or number of items delivered, and allowed only indirect competition between pairs of southern grey shrike (Lanius meridionalis) nestlings. Nestlings demonstrated the ability to detect differences in zone profitability and position themselves accordingly. By the end of both the prey size and delivery rate trials nestlings had increased the amount of time spent in the high quality zone. Such movement in response to differences in load quality, as well as frequency, demonstrates the ability of nestlings to learn about their environment and to facultatively adjust their begging in order to maximise energetic rewards.     

Estimating the exposure of small mammals at three sites within the Chernobyl exclusion zone--a test application of the ERICA Tool

An essential step in the development of any modelling tool is the validation of its predictions. This paper describes a study conducted within the Chernobyl exclusion zone to acquire data to conduct an independent test of the predictions of the ERICA Tool which is designed for use in assessments of radiological risk to the environment. Small mammals were repeatedly trapped at three woodland sites between early July and mid-August 2005. Thermoluminescent dosimeters mounted on collars were fitted to Apodemus flavicollis, Clethrionomys glareolus and Microtus spp. to provide measurements of external dose rate. A total of 85 TLDs were recovered. All animals from which TLDs were recovered were live-monitored to determine (90)Sr and (137)Cs whole-body activity concentrations. A limited number of animals were also analysed to determine (239,240)Pu activity concentrations. Measurements of whole-body activity concentrations and dose rates recorded by the TLDs were compared to predictions of the ERICA-Tool. The predicted (90)Sr and (137)Cs mean activity concentrations were within an order of magnitude of the observed data means. Whilst there was some variation between sites in the agreement between measurements and predictions this was consistent with what would be expected from the differences in soil types at the sites. Given the uncertainties of conducting a study such as this, the agreement observed between the TLD results and the predicted external dose rates gives confidence to the predictions of the ERICA Tool.     

The trophic role of glycolic acid in coastal seawater. I. Heterotrophic metabolism in seawater and bacterial cultures

Glycolic acid, a known algal excretory product, represents a potentially important energy source for heterotrophic bacteria in marine waters. Measurements of heterotrophic uptake and mineralization by the natural microbes in the plankton indicate quantitative use of glycolic acid comparable to other common microbial substrates. This activity shows vertical and horizontal variations that correlate in a general way with primary productivity. Glycolic acid appears to be present at higher concentrations than other low molecular weight substrates, and it also shows a lower rate of turnover. It is mineralized (respired) to a greater extent than other recorded substrates, an average of 70% of total uptake. Two-thirds of a total of 141 colonies of bacteria cultured from seawater on marine agar proved capable oftaking up and respiring glycolic acid. These same bacteria, however, were unable to utilize glycolic acid for growth when it was the sole carbon source. Glycolate may therefore occur at higher concentrations and show erratic fluctuations in natural waters because microbial use is not tied to glycolate production but to the presence of other substrates. The fact that so many bacteria are able to metabolize it indicates a possibly important trophic role as an energy source. It is suggested that glycolic acid may be a major source of energy for active transport of other substrates by marine bacteria.