Chemical diversity and biological activities of essential oils from native populations of Clinopodium menthifolium subsp. ascendens (Jord.) Govaerts

Environmental Science and Pollution Research - This study is focused on the analysis of regional variation of the chemical compositions of three Clinopodium menthifolium subsp. ascendens (Jord.)...     

Nest site selection in the open-nesting honeybee Apis florea

We studied nest site selection by swarms of the red dwarf honeybee, Apis florea. By video recording and decoding all dances of four swarms, we were able to determine the direction and distances indicated by 1,239 dances performed by the bees. The bees also performed a total of 715 nondirectional dances; dances that were so brief that no directional information could be extracted. Even though dances converged over time to a smaller number of areas, in none of the swarms did dances converge to one site. As a result, even prior to lift off, bees performed dances indicating nest sites in several different directions. Two of four swarms traveled directly in what seemed to be the general direction indicated by the majority of dances in the half hour prior to swarm lift off. The other two traveled along circuitous routes in the general direction indicated by the dances. We suggest that nest site selection in A. florea has similar elements to nest site selection in the better-studied Apis mellifera. However, the observation that many more locations are indicated by dances prior to lift off also shows that there are fundamental differences between the two species.     

Prenatal diagnosis of Crigler–Najjar syndrome type I by single-strand conformation polymorphism (SSCP)

Crigler–Najjar syndrome type I (CN-I) is a rare and severe inherited disorder of bilirubin metabolism, caused by the total deficiency of bilirubin-UDP-glucuronosyltransferase (UGT) activity. Enzymatic diagnosis cannot be performed in chorionic villi or amniocytes as UGT is not active in these tissues. The cloning of the UGT1 gene and the identification of disease-causing mutations have led to the possibility of performing DNA-based diagnosis. Here we report DNA-based prenatal diagnosis of CN-I in two Tunisian families in whom CN-I patients were diagnosed. As we had previously shown that CN-I was, in Tunisia, associated with homozygosity for the Q357R mutation within the UGT1 gene, we were able to detect this mutation in both families and to show that it was easily recognized by single-strand conformation polymorphism (SSCP) analysis. In both cases, SSCP analysis of fetal DNA showed that the fetus was heterozygous for the Q357R mutation. In one family, the pregnancy was carried to term and a healthy baby was born, whereas, in the other family, the pregnancy is still continuing. Thus the prenatal diagnosis of CN-I is possible, provided disease-causing mutations have been identified. SSCP analysis of DNA prepared either from amniocytes or from chorionic villi is a simple, reliable and fast method for prenatal diagnosis. Copyright © 2002 John Wiley & Sons, Ltd.     

Isolation, characterization and diuron transformation capacities of a bacterial strain Arthrobacter sp. N2

A bacterial strain able to transform diuron was isolated from a soil by enrichment procedures. Strain isolation was realized by plating on minimal-agarose medium spread with this herbicide and selecting the colonies surrounded by a clear thin halo. One strain was characterized and identified as an Arthrobacter sp. It metabolized diuron and the final transformation product, 3,4-dichloroaniline, was produced in stoichiometric amounts. The transformation of diuron at different concentrations was more efficient in the presence of alternative sources of carbon and nitrogen. The bacterial activity was also evaluated in soil microcosms with a consequent disappearance of diuron and concomitant appearance of 3,4-dichloroaniline, of which the concentration decreased thereafter. Bacterial cells inoculated in the microcosms survived as viable but eventually nonculturable cells.     

Characterisation of road sediments near Bordeaux with emphasis on phosphorus

Road sediments from the region of Bordeaux (France) were analysed for trace metals, hydrocarbons (including Polycyclic Aromatic Hydrocarbons, PAHs) and phosphorus. The aim of the study was to assess their potential risk for the environment. The sediments were collected by means of a sweeper. The particles are mostly sandy clay loam and silty clay loam with 5.6-8.3% CaO. Heavy metal concentrations are generally below the French and Dutch standards for polluted soils, but a few samples have higher concentrations, e.g., 547 mg kg(-1) for Zn, and 222 mg kg(-1) for Pb. PAH concentrations are above the Dutch target value for polluted soils, and could be a threat to the environment: pyrene (2600 microg kg(-1)) and fluoranthene (1400 microg kg(-1)) have the highest concentrations, whereas chrysene (340 microg kg(-1)) has the lowest. Consequently, these sediments must be considered as waste according to the French circular no 2001-39 from 18 June 2001 and cannot be disposed of anywhere. The Standards Measurements and Testing (SMT) protocol for sequential extraction of phosphorus in sediments was used to determine the forms of phosphorus in the samples. Total phosphorus concentration is 620 mg kg(-1) on average, with a maximum of 933 mg kg(-1); organic phosphorus content is low (36 mg kg(-1) on average). The protocol could be slightly amended, especially with regards to organic phosphorus at low concentrations and could then be used for the determination of phosphorus in other materials such as sludge from detention ponds.     

A new approach to graphical and numerical analysis of links between plant chemotaxonomy and secondary metabolism from HPLC data smoothed by a simplex mixture design

Summary. HPLC analysis of secondary metabolites represents an efficient tool for the studying of plant chemical diversity under different aspects: chemotaxonomy, metabolomics, adaptative responses to ecological factors, etc. Statistical analyses of HPLC databases, e.g. correlation analysis between HPLC peaks, can reliably provide information on the similarity/dissimilarity degrees between the chemical compounds. The similarities, corresponding to positive correlations, can be interpreted in terms of analogies between chemical structures, synchronic metabolisms or co-evolution of two compounds under certain environment conditions, etc. . In terms of metabolism, positive correlations can translate precursor-product relationships between compounds; negative correlations can be indicative of competitive processes between two compounds for a common precursor(s), enzyme(s) or substrate(s). Furthermore, the correlation analysis under a metabolic aspect can help to understand the biochemical origins of an observed polymorphism in a plant species. With the aim of showing this, we present a new approach based on a simplex mixture design, Scheffé matrix, which provides a correlation network making it possible to graphically visualise and to numerically model the metabolic trends between HPLC peaks. The principle of the approach consisted in mixing individual HPLC profiles representative of different phenotypes, then from a complete mixture set, a series of average profiles were calculated to provide a new database with a small variability. Several iterations of the mixture design provided a smoothed final database from which the relationships between the secondary metabolites were graphically and numerically analysed. These relationships were scale-dependent, namely either deterministic or systematic: the first consisted of a monotonic global trend covering the whole variation field of each metabolites’ pair; the second consisted of repetitive monotonic variations which gradually attenuated or intensified along a global trend. This new metabolomic approach was illustrated from 404 individual plants of Astragalus caprinus (Leguminoseae), belonging to four chemical phenotypes (chemotypes) on the basis of flavonoids analysed in their leaves. After smoothing, the relationships between flavonoids were numerically fitted using linear or polynomial models; therefore the co-response coefficients were easily interpreted in terms of metabolic affinities or competitions between flavonoids which would be responsible of the observed chemical polymorphism (the four chemotypes). The statistical validation of the approach was carried out by comparing Pearson correlations to Spearman correlations calculated from the smoothed and the crude HPLC database, respectively. Moreover, the signs of the smoothed relationships were finely supported by analogies and differences between the chemical structures of flavonoids, leading to fluent interpretation in relation to the pathway architecture.     

The cladocerans of the Aegean Sea: Occurrence and seasonal variation

The little-known cladoceran population of the Aegean Sea was studied. One hundred and seventy-six planktonic samples were collected during 8 cruises in the Aegean Sea (4 in the northern part, 4 in the southern part). From these samples, the following 4 species of Cladocera were determined: Evadne spinifera Muller, Evadne tergestina Claus, Penilia avirostris Dana, Podon intermedius Lilljeborg. All species were found both in the north and in the south Aegean Sea, with the exception of P. avirostris, which was found only in the northern Aegean Sea. Its absence from the southern part is attributed to the higher salinities and the pelagic character of the area. With regard to abundance, E. spinifera is by far the commonest in this area; P. avirostris and E. tergestina could be characterised as frequent forms; P. intermedius is scarce. P. avirostris, E. spinifera and E. tergestina are thermophilic; their occurrence is more or less restricted to the warm season; P. intermedius is psychrophilic and appears only in winter.