Microbial indicators of heavy metal contamination in urban and rural soils

Urban soils and especially their microbiology have been a neglected area of study. In this paper, we report on microbial properties of urban soils compared to rural soils of similar lithogenic origin in the vicinity of Aberdeen city. Significant differences in basal respiration rates, microbial biomass and ecophysiological parameters were found in urban soils compared to rural soils. Analysis of community level physiological profiles (CLPP) of micro-organisms showed they consumed C sources faster in urban soils to maintain the same level activity as those in rural soils. Cu, Pb, Zn and Ni were the principal elements that had accumulated in urban soils compared with their rural counterparts with Pb being the most significant metal to distinguish urban soils from rural soils. Sequential extraction showed the final residue after extraction was normally the highest proportion except for Pb, for which the hydroxylamine-hydrochloride extractable Pb was the largest part. Acetic acid extractable fraction of Cd, Cu, Ni, Pb and Zn were higher in urban soils and aqua regia extractable fraction were lower suggesting an elevated availability of heavy metals in urban soils. Correlation analyses between different microbial indicators (basal respiration, biomass-C, and sole C source tests) and heavy metal fractions indicated that basal respiration was negatively correlated with soil Cd, Cu, Ni and Zn inputs while soil microbial biomass was only significantly correlated with Pb. However, both exchangeable and iron- and manganese-bound Ni fractions were mostly responsible for shift of the soil microbial community level physiological profiles (sole C source tests). These data suggest soil microbial indicators can be useful indicators of pollutant heavy metal stress on the health of urban soils.     

Foraging areas differentially affect reproductive output and interpretation of trends in abundance of loggerhead turtles

Diet items and habitat constitute some of the environmental resources that may be used differently by individuals within a population. Long-term fidelity by individuals to particular resources exemplifies individual specialization, a phenomenon that is becoming increasingly recognized across a wide range of species. Less is understood about the consequences of such specialization. Here, we investigate the effects of differential foraging ground use on reproductive output in 183 loggerhead sea turtles (Caretta caretta) nesting at Wassaw Island, Georgia (31.89°N, 80.97°W), between 2004 and 2011 with resulting possible fitness effects. Stable isotope analysis was used to assign the adult female loggerheads to one of three foraging areas in the Northwest Atlantic Ocean. Our data indicate that foraging area preference influences the size, fecundity, and breeding periodicity of adult female loggerhead turtles. We also found that the proportion of turtles originating from each foraging area varied significantly among the years examined. The change in the number of nesting females across the years of the study was not a result of uniform change from all foraging areas. We develop a novel approach to assess differential contributions of various foraging aggregations to changes in abundance of a sea turtle nesting aggregation using stable isotopes. Our approach can provide an improved understanding of the influences on the causes of increasing or decreasing population trends and allow more effective monitoring for these threatened species and other highly migratory species.     

MBM fuel feeding system design and evaluation for FBG pilot plant

A biomass fuel feeding system has been designed, constructed and evaluated for a fluidized bed gasifier (FBG) pilot plant at the University of Saskatchewan (Saskatoon, SK, Canada). The system was designed for meat and bone meal (MBM) to be injected into the gasifier at a mass flow-rate range of 1-5 g/s. The designed system consists of two stages of screw conveyors, including a metering stage which controlled the flow-rate of fuel, a rotary airlock and an injection conveyor stage, which delivered that fuel at a consistent rate to the FBG. The rotary airlock which was placed between these conveyors, proved unable to maintain a pressure seal, thus the entire conveying system was sealed and pressurized. A pneumatic injection nozzle was also fabricated, tested and fitted to the end of the injection conveyor for direct injection and dispersal into the fluidized bed. The 150 mm metering screw conveyor was shown to effectively control the mass output rate of the system, across a fuel output range of 1-25 g/s, while the addition of the 50mm injection screw conveyor reduced the irregularity (error) of the system output rate from 47% to 15%. Although material plugging was found to be an issue in the inlet hopper to the injection conveyor, the addition of air sparging ports and a system to pulse air into those ports was found to successfully eliminate this issue. The addition of the pneumatic injection nozzle reduced the output irregularity further to 13%, with an air supply of 50 slpm as the minimum air supply to drive this injector. After commissioning of this final system to the FBG reactor, the injection nozzle was found to plug with char however, and was subsequently removed from the system. Final operation of the reactor continues satisfactorily with the two screw conveyors operating at matching pressure with the fluidized bed, with the output rate of the system estimated based on system characteristic equations, and confirmed by static weight measurements made before and after testing. The error rate by this method is reported to be approximately 10%, which is slightly better than the estimated error rate of 15% for the conveyor system. The reliability of this measurement prediction method relies upon the relative consistency of the physical properties of MBM with respect to its bulk density and feeding characteristics.     

Chlorobiphenyl contaminants at Pladda and Garroch Head in the Firth of Clyde following the cessation of sewage sludge dumping

Sewage sludge dumping at Garroch Head in the Firth of Clyde ceased on 31 December 1998. Eighteen of the 209 chlorinated biphenyls (CBs) were measured in plaice livers, collected in 1999 and 2000, from the former Garroch Head dump site. Samples were also obtained from Pladda, a site reasonably remote from the former dump site but also in the Clyde, in 1999 only. These results were compared to the CB concentrations in plaice livers collected between 1992 and 1998 from Garroch Head and Pladda. Additional samples were also taken from a clean reference site, close to Colonsay. Concentrations of the congeners in the livers of fish caught at the former Garroch Head dump site in 1999 were marginally higher than those from Pladda, with a mean CB concentration of 1861 microg kg(-1) lipid in the Garroch Head plaice livers and 1725 microg kg(-1) lipid for the sample from Pladda. The mean CB concentration in the 2000 Garroch Head samples was 2253 microg kg(-1) lipid. CB concentration in plaice livers from Colonsay were lower than both the Pladda and Garroch Head fish, with plaice livers from Colonsay giving a mean CB concentration of 1076 microg kg(-1) lipid in 1999 and 345.1 microg kg(-1) lipid in 2000. The data was evaluated using principal component analysis (PCA). Pattern analysis was undertaken by normalising to the recalcitrant CB 153. There was an indication that the CB pattern has changed since the cessation of dumping with the proportion of tri- and tetra-chlorinated CBs being lower in plaice from Garroch Head than in previous years.     

Isotopic composition and origin of uranium and plutonium in selected soil samples collected in Kosovo

Soil samples collected from locations in Kosovo where depleted uranium (DU) ammunition was expended during the 1999 Balkan conflict were analysed for uranium and plutonium isotopes content (234U, 235U, 236U, 238U, 238Pu, (239 + 240)Pu). The analyses were conducted using gamma spectrometry (235U, 238U), alpha spectrometry (238Pu, (239 + 240)Pu), inductively coupled plasma-mass spectrometry (ICP-MS) (234U, 235U, 236U, 238U) and accelerator mass spectrometry (AMS) (236U)). The results indicated that whenever the U concentration exceeded the normal environmental values (approximately 2 to 3 mg/kg) the increase was due to DU contamination. 236U was also present in the released DU at a constant ratio of 236U (mg/kg)/238U (mg/kg) = 2.6 x 10(-5), indicating that the DU used in the ammunition was from a batch that had been irradiated and then reprocessed. The plutonium concentration in the soil (undisturbed) was about 1 Bq/kg and, on the basis of the measured 238Pu/(239 + 240)Pu, could be entirely attributed to the fallout of the nuclear weapon tests of the 1960s (no appreciable contribution from DU).     

PATTERNS OF SUSPENDED SEDIMENT TRANSPORT IN A COASTAL ALASKA STREAM1

Suspended sediment data from a 154 ha watershed on northeast Chichagof Island, Alaska, were collected over three fall storm seasons from 1980 to 1982. Sediment rating curves for nine pooled storms explained less than 34 percent of the variation in total suspended solids (TSS). Significantly higher concentrations of suspended sediment occurred during the rising limb of storm hydrographs than for similar flows on the falling limb, accounting for hysteresis loops in TSS versus streamflow plots for individual storms. These hysteresis loops were wider during early season storms, indicating that easily transportable fine sediment may have been flushed from the upper portion of channel banks and from behind large organic debris during early season peak flows. Regression relationships (TSS versus Q) developed for the highest stormflows (> 1 m³/s) had steeper slopes than the lower stormflows (< 1 m³/s). Turbidity correlated well (r=0.94) with TSS for all storm-flow data combined. Organic matter constituted an average of 35 percent (by weight) of TSS for all water quality samples.     

Crop residue removal and fertilizer N: Effects on soil organic carbon in a long-term crop rotation experiment on a Udic Boroll

Biofuels can be produced by converting cellulose in crop residues to ethanol. This has recently been viewed as a potential supplement to non-renewable energy sources, especially in the Americas. A 50-yr field experiment was analyzed to determine the influence of (i) removing approximately 22% of the above-ground wheat (Triticum aestivum L.) residue each crop year, and (ii) N and P fertilization on soil carbon (C) in the top 15 cm depth of a fallow–wheat–wheat (F–W–W) rotation. The study was conducted from 1958 to 2007 on a clay soil, at Indian Head in sub-humid southeast Saskatchewan, Canada. Soil C concentrations and bulk densities were measured in the 0–7.5 and 7.5–15 cm depths in 1987, 1996 and 2007 and soil C changes were related to C inputs estimated from straw and root yields calculated from regressions relating these to grain yields. Two soil organic matter models [the Campbell model and the Introductory Carbon Balance Model (ICBM)] were also used to simulate and predict the effects of the treatments on soil C change over time, and to estimate likely soil C change if 50% or 95% of above-ground residues were harvested each crop year. Crop residue removal reduced cumulative C inputs from straw and roots over the 50-yr experiment by only 13%, and this did not significantly (P > 0.05) reduce soil C throughout the experiment duration. However, after 50 yr of applying N fertilizer at recommended rates, soil C increased significantly by about 3 Mg ha⁻¹ compared to the non-fertilized treatment. The simulated effect of removing 50% and 95% of the above-ground residues suggested that removing 50% of the straw would likely have a detectable effect on the soil C, while removing 95% of the straw certainly would. Measurements and model simulations suggest that adoption of no-tillage without proper fertilization will not increase soil C. Although it appears that a modest amount of residue may be safely removed from these Udic Borolls (Black Chernozems) without a measurable effect on soil C, this would only be feasible if accompanied by appropriate fertility management.     

The scope and severity of white-nose syndrome on hibernating bats in North America

Assessing the scope and severity of threats is necessary for evaluating impacts on populations to inform conservation planning. Quantitative threat assessment often requires monitoring programs that provide reliable data over relevant spatial and temporal scales, yet such programs can be difficult to justify until there is an apparent stressor. Leveraging efforts of wildlife management agencies to record winter counts of hibernating bats, we collated data for 5 species from over 200 sites across 27 U.S. states and 2 Canadian provinces from 1995 to 2018 to determine the impact of white-nose syndrome (WNS), a deadly disease of hibernating bats. We estimated declines of winter counts of bat colonies at sites where the invasive fungus that causes WNS (Pseudogymnoascus destructans) had been detected to assess the threat impact of WNS. Three species undergoing species status assessment by the U.S. Fish and Wildlife Service (Myotis septentrionalis, Myotis lucifugus, and Perimyotis subflavus) declined by more than 90%, which warrants classifying the severity of the WNS threat as extreme based on criteria used by NatureServe. The scope of the WNS threat as defined by NatureServe criteria was large (36% of Myotis lucifugus range) to pervasive (79% of Myotis septentrionalis range) for these species. Declines for 2 other species (Myotis sodalis and Eptesicus fuscus) were less severe but still qualified as moderate to serious based on NatureServe criteria. Data-sharing across jurisdictions provided a comprehensive evaluation of scope and severity of the threat of WNS and indicated regional differences that can inform response efforts at international, national, and state or provincial jurisdictions. We assessed the threat impact of an emerging infectious disease by uniting monitoring efforts across jurisdictional boundaries and demonstrated the importance of coordinated monitoring programs, such as the North American Bat Monitoring Program (NABat), for data-driven conservation assessments and planning.     

Quantifying the probability of detection of wild ungulates with the Judas technique

The Judas technique is often used in control or eradication of particular vertebrate pests. The technique exploits the tendency of individuals to form social groups. A radio collar is affixed to an individual and its subsequent monitoring facilitates the detection of other conspecifics. Efficacy of this technique would be improved if managers could estimate the probability that a Judas individual would detect conspecifics. To calculate this probability, we estimated association rates of Judas individuals with other Judas individuals, given the length of time the Judas has been deployed. We developed a simple model of space-use for individual Judas animals and constrained detection probabilities to those specific areas. We then combined estimates for individual Judas animals to infer the probability that a wild individual could be detected in an area of interest via Judas surveillance. We illustrated the method by using data from a feral goat eradication program on Isla Santiago, Galápagos, and a feral pig eradication program on Santa Cruz Island, California. Association probabilities declined as the proximity between individual areas of use of a Judas pair decreased. Unconditional probabilities of detection within individual areas of use averaged 0.09 per month for feral pigs and 0.11 per month for feral goats. Probabilities that eradication had been achieved, given no detections of wild conspecifics, and an uninformative prior probability of eradication were 0.79 (90% CI 0.22–0.99) for feral goats and 0.87 (90% CI 0.44–1.0) for feral pigs. We envisage several additions to the analyses used that could improve estimates of Judas detection probability. Analyses such as these can help managers increase the efficacy of eradication efforts, leading to more effective effects to restore native biodiversity.