Approaches to semi-synthetic minimal cells: a review

Following is a synthetic review on the minimal living cell, defined as an artificial or a semi-artificial cell having the minimal and sufficient number of components to be considered alive. We describe concepts and experiments based on these constructions, and we point out that an operational definition of minimal cell does not define a single species, but rather a broad family of interrelated cell-like structures. The relevance of these researches, considering that the minimal cell should also correspond to the early simple cell in the origin of life and early evolution, is also explained. In addition, we present detailed data in relation to minimal genome, with observations cited by several authors who agree on setting the theoretical full-fledged minimal genome to a figure between 200 and 300 genes. However, further theoretical assumptions may significantly reduce this number (i.e. by eliminating ribosomal proteins and by limiting DNA and RNA polymerases to only a few, less specific molecular species). Generally, the experimental approach to minimal cells consists in utilizing liposomes as cell models and in filling them with genes/enzymes corresponding to minimal cellular functions. To date, a few research groups have successfully induced the expression of single proteins, such as the green fluorescence protein, inside liposomes. Here, different approaches are described and compared. Present constructs are still rather far from the minimal cell, and experimental as well as theoretical difficulties opposing further reduction of complexity are discussed. While most of these minimal cell constructions may represent relatively poor imitations of a modern full-fledged cell, further studies will begin precisely from these constructs. In conclusion, we give a brief outline of the next possible steps on the road map to the minimal cell.

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Degradation kinetics of butyltin compounds during the bioremediation of contaminated harbour sediments

The present study was aimed at the reclamation of harbour sediments contaminated with butyltin compounds (BTCs) by means of biostimulation and/or bioaugmentation experiments carried out in a 5-L slurry bioreactor. In the biostimulation experiment with inorganic nutrients, almost 50% of TBT was degraded in 20 weeks. In the bioaugmentation experiment with a microbial consortium, no significant degradation of TBT was observed. Conversely, bioaugmentation combined with biostimulation led to a decrease of ～50% in TBT after four weeks. A simple kinetic model fitted to the experimental data of BTC concentration allowed us to estimate that 10 weeks are needed to decrease BTC contamination by 90% using a strategy based on both biostimulation and bioaugmentation, and 29 weeks for a strategy using biostimulation only. Overall, our study indicates that strategies based on biostimulation coupled to bioaugmentation can be effective in significantly reducing the concentration of BTCs over relatively short timescales.     

Ecotoxicological evaluation of sediments by battery bioassays: application and comparison of two integrated classification systems

There is a recognised need to integrate multiple toxicity data deriving from battery bioassays into an easily understandable and single value, which may facilitate the decision-making process related to the management of contaminated sediments. In this study, two integration results systems were applied and compared: toxicity classification system (TCS) and Toxicity Test Battery integrated Index (TBI). The quality of sediments of the Taranto seas (Mar Grande and Mar Piccolo) was assessed by a battery of five test species representing different trophic levels (Dunaliella tertiolecta, Tigriopus fulvus, Corophium insidiosum, Mytilus galloprovincialis, and Anphibalanus amphitrite) and performed on three exposure phases (elutriate, porewater, and whole sediment). The integration of biological tests results with TBI showed that stations located in Mar Grande and one station in Mar Piccolo were in the high ecotoxicological risk level, according to the results obtained with TCS. The comparison of results deriving from two evaluation systems showed similarity in the ecotoxicological risk level. Only in one case there was a lack of concordance between two indices giving opposite judgments. The present study demonstrates that the use of one of the two indices can be useful to estimate and to rank hazard level for sediments.     

Assessment of individual and combined toxicities of three heavy metals (Cu,Cd and Hg) by using Tigriopus fulvus

The toxicities of copper, cadmium, and mercury ions and their binary and ternary mixtures were studied using the copepods Tigriopus fulvus. The LC50 values measured after 48 h exposure to single metal solutions revealed a toxicities rank as follows: CdT. fulvus. The combined effect of the metals was found to be antagonistic for Cu?Cd, Hg?Cd, and Cu?Cd?Hg, additive for Hg?Cu.     

Sex identification in female crayfish is bimodal

Sex identification has been studied in several species of crustacean decapods but only seldom was the role of multimodality investigated in a systematic fashion. Here, we analyse the effect of single/combined chemical and visual stimuli on the ability of the crayfish Procambarus clarkii to identify the sex of a conspecific during mating interactions. Our results show that crayfish respond to the offered stimuli depending on their sex. While males rely on olfaction alone for sex identification, females require the combination of olfaction and vision to do so. In the latter, chemical and visual stimuli act as non-redundant signal components that possibly enhance the female ability to discriminate potential mates in the crowded social context experienced during mating period. This is one of the few clear examples in invertebrates of non-redundancy in a bimodal communication system.     

Evaluation of carbon stock variation in Northern Italian soils over the last 70 years

Carbon (C) sequestration in soils is gaining increasing acceptance as a means of reducing net carbon dioxide (CO₂) emissions to the atmosphere. Numerous studies on the global carbon budget suggest that terrestrial ecosystems in the mid-latitudes of the Northern Hemisphere act as a large carbon sink of atmospheric CO₂. However, most of the soils of North America, Australia, New Zealand, South Africa and Eastern Europe lost a great part of their organic carbon pool on conversion from natural to agricultural ecosystems during the explosion of pioneer agriculture, and in Western Europe the adoption of modern agriculture after the Second World War led to a drastic reduction in soil organic carbon content. The depletion of organic matter is often indicated as one of the main effects on soil, and the storage of organic carbon in the soil is a means of improve the quality of soils and mitigating the effects of greenhouse gas emission. The soil organic carbon in an area of Northern Italy over the last 70 years has been assessed In this study. The variation of top soil organic carbon (SOC) ranged from −60.3 to +6.7%; the average reduction of SOC, caused by agriculture intensification, was 39.3%. This process was not uniform, but related to trends in land use and agriculture change. For the area studied (1,394 km²) there was an estimated release of 5 Tg CO₂-C to the atmosphere from the upper 30 cm of soil in the period 1935–1990.     

The effects of subchronic exposure to NeemAzal T/S on zebrafish (Danio rerio)

The objective of the study was to investigate the subchronic effects of the insecticidal preparation NeemAzal T/S at concentrations of 3, 10 and 30?mg/L on the mortality, growth and histopathology of juvenile zebrafish (Danio rerio), as well as its related effects on selected indices of oxidative stress during a 28-day toxicity test. The juvenile growth toxicity test was performed according to OECD Guidelines 215 (Fish, Juvenile Growth Test). The results of this study indicate that these tested concentrations of NeemAzal T/S (containing 1% of the active ingredient azadirachtin A) affect fish growth and have a negative influence on the indices of oxidative stress in the juvenile stage of zebrafish, as well as cause mild histopathological changes in liver tissue.     

Multivariate tools to investigate the spatial contaminant distribution in a highly anthropized area (Gulf of Naples,Italy)

Environmental Science and Pollution Research - The Gulf of Naples located in a high anthropized coastal area is subjected to an infrastructural intervention for the installation of a submarine...     

Removal of emerging contaminants from wastewater using advanced treatments. A review

Environmental Chemistry Letters - The rise of emerging contaminants in waters challenges the scientific community and water treatment stakeholders to design remediation techniques that are simple,...