Using vertebrate environmental DNA from seawater in biomonitoring of marine habitats

Conservation and management of marine biodiversity depends on biomonitoring of marine habitats, but current approaches are resource-intensive and require different approaches for different organisms. Environmental DNA (eDNA) extracted from water samples is an efficient and versatile approach to detecting aquatic animals. In the ocean, eDNA composition reflects local fauna at fine spatial scales, but little is known about the effectiveness of eDNA-based monitoring of marine communities at larger scales. We investigated the potential of eDNA to characterize and distinguish marine communities at large spatial scales by comparing vertebrate species composition among marine habitats in Qatar, the Arabian Gulf (also known as the Persian Gulf), based on eDNA metabarcoding of seawater samples. We conducted species accumulation analyses to estimate how much of the vertebrate diversity we detected. We obtained eDNA sequences from a diverse assemblage of marine vertebrates, spanning 191 taxa in 73 families. These included rare and endangered species and covered 36% of the bony fish genera previously recorded in the Gulf. Sites of similar habitat type were also similar in eDNA composition. The species accumulation analyses showed that the number of sample replicates was insufficient for some sampling sites but suggested that a few hundred eDNA samples could potentially capture >90% of the marine vertebrate diversity in the study area. Our results confirm that seawater samples contain habitat-characteristic molecular signatures and that eDNA monitoring can efficiently cover vertebrate diversity at scales relevant to national and regional conservation and management.     

Characteristics that make trophy hunting of giant pandas inconceivable

In November 1928, Theodore Jr. and Kermit Roosevelt led an expedition to China with the expressed purpose of being the first Westerners to kill the giant panda (Ailuropoda melanoleuca). The expedition lasted 8 months and resulted in the brothers shooting a giant panda in the mountains of Sichuan Province. Given the concurrent attention in the popular press describing this celebrated expedition, the giant panda was poised to be trophy hunted much like other large mammals around the world. Today, however, the killing of giant pandas, even for the generation of conservation revenue, is unthinkable for reasons related to the species itself and the context, in time and space, in which the species was popularized in the West. We found that the giant panda's status as a conservation symbol, exceptional charisma and gentle disposition, rarity, value as a nonconsumptive ecotourism attraction, and endemism are integral to the explanation of why the species is not trophy hunted. We compared these intrinsic and extrinsic characteristics with 20 of the most common trophy-hunted mammals to determine whether the principles applying to giant pandas are generalizable to other species. Although certain characteristics of the 20 trophy-hunted mammals aligned with the giant panda, many did not. Charisma, economic value, and endemism, in particular, were comparatively unique to the giant panda. Our analysis suggests that, at present, exceptional characteristics may be necessary for certain mammals to be excepted from trophy hunting. However, because discourse relating to the role of trophy hunting in supporting conservation outcomes is dynamic in both science and society, we suspect these valuations will also change in future.     

Applying the zoo model to conservation of threatened exceptional plant species

Maintaining a living plant collection is the most common method of ex situ conservation for plant species that cannot be seed banked (i.e., exceptional species). Viability of living collections, and their value for future conservation efforts, can be limited without coordinated efforts to track and manage individuals across institutions. Using a pedigree-focused approach, the zoological community has established an inter-institutional infrastructure to support long-term viability of captive animal populations. We assessed the ability of this coordinated metacollection infrastructure to support the conservation of 4 plant species curated in living collections at multiple botanic gardens around the world. Limitations in current practices include the inability to compile, share, and analyze plant collections data at the individual level, as well as difficulty in tracking original provenance of ex situ material. The coordinated metacollection framework used by zoos can be adopted by the botanical community to improve conservation outcomes by minimizing the loss of genetic diversity in collections. We suggest actions to improve ex situ conservation of exceptional plant species, including developing a central database to aggregate data and track unique individuals of priority threatened species among institutions and adapting a pedigree-based population management tool that incorporates life-history aspects unique to plants. If approached collaboratively across regional, national, and global scales, these actions could transform ex situ conservation of threatened plant species.     

Singular air entrapment at vertical and horizontal supported jets: plunging jets versus hydraulic jumps

Environmental Fluid Mechanics - In plunging jets and at hydraulic jumps, large amounts of air bubbles are entrained at the impingement of the liquid jet into the receiving body. Air is entrapped...     

The tree species matters: Biodiversity and ecosystem service implications of replacing Scots pine production stands with Norway spruce

Ambio - The choice of tree species used in production forests matters for biodiversity and ecosystem services. In Sweden, damage to young production forests by large browsing herbivores is helping...     

Correction to: Keeping pace with forestry: Multi-scale conservation in a changing production forest matrix

Ambio - In the original published article, the sentence “Nevertheless, semi-natural forest remnants continue to be harvested and fragmented (Svensson et al. 2018; Jonsson et al. 2019), and...     

Growth of Dehalococcoides spp. and increased abundance of reductive dehalogenase genes in anaerobic PCB-contaminated sediment microcosms

Polychlorinated biphenyls (PCBs) contaminate 19% of US Superfund sites and represent a serious risk to human and environmental health. One promising strategy to remediate PCB-contaminated sediments utilizes organohalide-respiring bacteria (OHRB) that dechlorinate PCBs.

However, functional genes that act as biomarkers for PCB dechlorination processes (i.e., reductive dehalogenase genes) are poorly understood. Here, we developed anaerobic sediment microcosms that harbor an OHRB community dominated by the genus Dehalococcoides. During the 430-day microcosm incubation, Dehalococcoides 16S rRNA sequences increased two orders of magnitude to 10⁷ copies/g of sediment, and at the same time, PCB118 decreased by as much as 70%. In addition, the OHRB community dechlorinated a range of penta- and tetra-chlorinated PCB congeners including PCBs 66, 70?+?74?+?76, 95, 90?+?101, and PCB110 without exogenous electron donor. We quantified candidate reductive dehalogenase (RDase) genes over a 430-day incubation period and found rd14, a reductive dehalogenase that belongs to Dehalococcoides mccartyi strain CG5, was enriched to 10⁷ copies/g of sediment. At the same time, pcbA5 was enriched to only 10⁵ copies/g of sediment. A survey for additional RDase genes revealed sequences similar to strain CG5’s rd4 and rd8. In addition to demonstrating the PCB dechlorination potential of native microbial communities in contaminated freshwater sediments, our results suggest candidate functional genes with previously unexplored potential could serve as biomarkers of PCB dechlorination processes.

     

A novel sigma coordinate system to simulate abrupt changes of underwater terrain in a hydrodynamic model: application to Lake Mead,USA

The sigma (SIG) coordinate system in ocean circulation simulation models results inevitably in horizontal pressure gradient error. This problem also emerges in models of deep lakes or reservoirs with the same characteristics of underwater terrain mutation. SIG coordinates reflect vertical relative stratification but cannot be used to calculate horizontal pressure gradient force in places with drastic topographic changes; this results in vertical water temperature and circulation errors. In deep lakes or reservoirs, differences in water density caused by the temperature difference between upper and lower water bodies is the primary cause of thermal stratification phenomena. Lake Mead was used as a case study on steep topography based on Environmental Fluid Dynamics Code (EFDC) model in this study. SIG coordinates result in close agreement between the calibrated temperature time series at the top and middle water layers, but disparity in the bottom water layer. The error emerges in the horizontal pressure gradient error due to the SIG coordinate transformation. Neither increasing the vertical resolution nor adjusting the horizontal viscosity coefficient resolve this error. We test the sigma-zed (SGZ) coordinate which combines Z coordinate and SIG coordinate as a replacement for the SIG coordinate to find that they effectively reduce the model’s runtime and simulation efficiency. The vertical temperature distribution in SGZ coordinate mode is more accurate than the distribution in SIG coordinate mode. The Navier-Stokes horizontal gradient and advection diffusion equation results under SIG coordinates are very sensitive to the pressure gradient. The replacement also enhances resolution near the thermocline, facilitates reclosing of the water bottom and the equal sigma surface, lends significant advantages in terms of vertical temperature in the simulation for local deep water with steep terrain, and shortens runtime for 0.14 h. SGZ mixed coordinates are recommended in the simulation of deep lakes or reservoirs wherein the underwater topography is large (with abundant continuous deep trenches or reefs).

     

Protective effects of thymoquinone against acrylamide-induced liver,kidney and brain oxidative damage in rats

Environmental Science and Pollution Research - Acrylamide (AA), an industrial monomer, may cause multi-organ toxicity through induction of oxidative stress and inflammation. The antioxidant...     

The effects of tourism and globalization over environmental degradation in developed countries

Environmental Science and Pollution Research - This paper focuses on long-term evidence on economic growth, international tourism, globalization, energy consumption and carbon dioxide (CO2)...